rna8853, rna8853 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8853
Unique Name	rna8853
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2439
Alignment location	KK037250.1:310347..311750 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100051g6.8880.mrna
Orig protein id	gnl\|cribi\|Naga_100051g6.8880
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:310347..311750 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100051g6	gene8583	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21841.1	cds8823	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8853	rna8853-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:310347..311750-
coding sequence from alignment at KK037250.1:310347..311750-

mRNA sequence

>rna8853 ID=rna8853|Name=rna8853|organism=Nannochloropsis gaditana|type=mRNA|length=2439bp
CAGCATTCAAAATTGAAATTTTCTGTTTTTATATACTCACACTCAACTAG
TCGCTCTTCACATTCCCGCTCCATCTCAAGTCTGGGGTTTATTGTAAGAC
ACGCAAAGCGTTAGCAAGATGTGTGGAATACTGGCAGCGTTATTGGGGGA
CGCTGACACGCACGTAAATCAGTTGATCGTGGACGGCCTGACAGTTTTGC
AGCACCGGGGACAAGGTACAGAGGGAGATGGGGGATGTTAGGGATGATTC
GGGCCAGCAGTCCAGGGGGAGAGAACAGGCGAGAGTTCTTGTGGCCGGTA
GATGTGCTGGCATTGCTGCTGCTTACCTGGATTGGAGGCAATCAGAAACA
TTCTGATGACTTTGTTTTTGATTCGCAGAAAACTACACCCGGAAGCTGAA
GGTTGAGAAAGGATTTCATTGCTTGAGCTTTGGCGTCTGAGCAAGACAGT
CGAGCTTTATTAATATGTTACAGAGGGCCTCACGTTTTCTCTTCCCTTAT
CTGTGACGTTTGTAGACGCGGCAGGGATCGTCACGTGCGAGAAGGGCCAC
TTGAACCTTCGCAAGGACAGTGGGCTTGTCTCGGAGGTTTTTCAGCACCA
CCACATGCTGACGCTTCGGGGGAACCTGGGAATCGGTCACGTGCGATATC
CGACGGCAGGCACGTCGTCTTGTGCCGAGGCGCAGCCTTTATTCACGAAC
TATCCTTACGGGATCTGCGCCGCGCACAACGGGAATATCACCAACACGGC
CGAGCTCCGGGCGGCCTTGGTGCAGAGCCTACGCCACATCAACACGGGGT
CCGACTCAGAGTTGGTGCTCAATGTGTTCGCGGAAGAGCTCCAGGCTCAG
CACAAGGGTCGGGATATCTGTCCCACAGACGTGTTCGAGGCAGTGAGGAA
GCTGATGGCCCGCTGCCACGGGGCCTACGGCGTGGTCATGCTCGTCAACG
GCGTCGGCCTCCTAGGCTTCCGCGATCCCCACGGCATTCGTCCCTTGGTG
CTGGGCACGCGGAATTCAACGACTCAAGCGGGGCTTACGGACTTCCTCCT
CGCCTCGGAGAGCGTGGCCATCGACACCCTGCGCTTCTCCCTGGTGGGGG
ACGTGGGCCCCGGGGAGGCCATCCTCATTACCACGGAGGGAAAGCTGCAC
CGGTCCCAGTGCGCCAGGAGCCCCCAGCTCATGCCTTGCATTTTTGAGTA
CGTGTACTTCGCCCGGCCCGACTCTATCATGGACGGCGTCCAGGTTTATG
AGGCCCGCCTGAACATGGGCGAGCGACTGGCGGAGAGCATCCTGCGGAAG
TACCCCCAGCACGACATCGACGTGGTGATCCCGGTGCCCGACACCTCGCG
GACTTCGGGTCTCTCCTGCGCCTACACCTTGGGGAGGCCTTTCCGGGAGG
GCTTCATCAAGAATCGTTACATTGCGCGCACCTTCATCATGCCCGGACAG
GCCGTCCGGATGAAGACGGTGCGCATGAAGCTCAACACCATCCGCTCCGA
GTTCCGGGGCAAAAACGTGCTGCTCGTCGACGATTCCATTGTGCGAGGGA
CCACGTCACGGGAGCTGGTCAGCATGGCGCGAGAGGCGGGCGCCCGGAAA
GTCTACGTGACCTCGGCCGCCCCCGCGGTCCGCTACCCTAATGTGTACGG
CATTGACATCCCCACCCGCATGGAGCTGATCGCAAACGAGCGGGACGAGG
CCCAGGTGGCGGCCGAGCTGGGGGCGGACTGGGTGGTGTACCAGGCCTTG
GAGGACCTGAAGACCAGTATCAGGAAGATCAACCCCTCCATCCAGGAGTT
CGATGCCTCCTGCTTCGACGGCCGGTACGTCACGGGCGACATCACGGACG
AGTACCTGGTGGAGCTGCAAGGTGGCAGAGGGAAGAAACAGGGGCACCAG
CAACAGCAGGCGGAAGTACTGCGGGTCCGAGCCGAGAGGAAGATGGTGAG
CGAGACGTCCGAGAATCACAAGACCTGGAACGCGCACGATGGTAATCACT
CTGCCAACAATTGTGTTGATGGAGCTCCAGCGGAGGCTGGGGCACCGGCG
CCGGCTGGCATGGGTCCTGGAGCAGCGAGCGTGAGCACGAGACTTTCAAG
CGCTTGCGGGGAGAAAAAGCTTGGAGGGAGCTGCGAGGTGCTGTTTAACT
TGGGGCGAGAGACGACTAAATGAAAATAACGACCGGGAACGATTGACGAG
GACTATAGCAGAGAACTGTTCTCTCGTGGATTGAATCGTCAGGCACTGGC
ATTGAGACTCGATGACGACACTTCTGGAAGGCTCGGGGGAAGGATCCTTG
TGCTAATCTCCGCGCCACCTTCCCTGCGACGACTGAGCTTTTGACAGGAC
TTGGTTCATCCATGCCCCTTTGATTGTAAGATATGTGTACATACAGTCTT
CATCTCTAGAAAAGTTTAAAAGATACTAAACCCAAAGAT

protein sequence of rna8853

>rna8853-protein ID=rna8853-protein|Name=rna8853|organism=Nannochloropsis gaditana|type=polypeptide|length=467bp
MQRARDLEAVVGQTSAVGRAKAQAGGKTRKEKDETGPQSMASSVLRGEEA
STVAGSGPVAFSGVAFDALSPLSQGGEMTAREEAREVEPVREDGEARKRK
KDESESERGALPRSEREGEAGRGEGDGKEEMLSEEGSLDTDSILVAVPKP
PSRVENKKGVGAKERASRDSSRVEKDRAPECEVMPSKVLCTPPERLRSSP
ISVVCPGGRGGARRPEQQAHQVLGQAAVRASVYRGRGGWQDAAGGDGEDN
EFIERAGPGLEGSLASESTLVYLSPEEERRIFEQHRREKEYWRRRFQKEE
APREVSHEGDGDVSVNEVLKGSDRRSESRSSFEIHRSRKRASAPTLSPVT
QLLVEEVDEVVAASLEGGEPFNGLDTAREVQFHAVGNRREEESLAGTIGG
KAGNSIGSVAEGLEAAWVKTEGGFSCGQNGRLAGDREAEGREDGAALRDI
SNIEHDGLIDAVIRKGP

mRNA from alignment at KK037250.1:310347..311750-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8853 ID=rna8853|Name=rna8853|organism=Nannochloropsis gaditana|type=mRNA|length=1404bp|location=Sequence derived from alignment at KK037250.1:310347..311750- (Nannochloropsis gaditana)
ATGCAGAGGGCTCGGGACTTGGAGGCCGTGGTCGGGCAGACCTCCGCCGT
GGGGAGAGCCAAGGCGCAGGCCGGGGGGAAGACGAGGAAAGAGAAAGATG
AAACGGGGCCACAGTCGATGGCAAGCTCTGTCCTGCGTGGAGAAGAGGCG
TCGACGGTCGCCGGTTCCGGTCCCGTCGCCTTTTCGGGTGTCGCTTTTGA
CGCTCTTTCACCCTTGAGCCAGGGGGGGGAGATGACGGCGAGGGAGGAGG
CGCGGGAGGTGGAGCCCGTCAGGGAGGATGGAGAGGCTCGTAAAAGGAAG
AAGGATGAAAGTGAGAGTGAAAGAGGAGCACTACCACGTTCAGAGAGAGA
AGGAGAGGCAGGGAGAGGCGAGGGAGATGGGAAGGAAGAGATGCTCTCGG
AGGAGGGAAGTCTCGACACAGACAGTATCCTGGTGGCGGTGCCCAAACCC
CCCTCTCGGGTGGAGAACAAGAAGGGGGTGGGTGCAAAGGAAAGGGCTTC
ACGTGACTCCTCTCGTGTTGAGAAGGACAGGGCCCCGGAGTGTGAGGTCA
TGCCTTCTAAGGTTCTGTGCACGCCACCGGAGCGGCTCCGTTCCTCTCCC
ATTTCCGTTGTTTGTCCAGGCGGACGGGGGGGGGCACGGCGCCCAGAGCA
GCAGGCCCATCAGGTGCTGGGACAGGCGGCTGTGAGGGCCTCGGTATATC
GAGGGCGGGGCGGCTGGCAAGACGCGGCGGGGGGGGATGGGGAGGACAAC
GAGTTCATTGAGCGGGCGGGCCCTGGCCTGGAGGGGTCTCTGGCCTCAGA
GTCAACCTTGGTTTATCTCTCCCCAGAGGAGGAAAGAAGGATCTTCGAGC
AGCACCGGCGAGAGAAGGAATACTGGCGTCGGCGGTTTCAAAAGGAGGAA
GCGCCCCGCGAGGTCTCGCATGAAGGTGACGGCGATGTTAGCGTAAATGA
GGTGCTCAAGGGCAGTGACAGGCGGAGCGAAAGCAGGAGCAGTTTTGAAA
TTCATAGAAGTAGGAAAAGAGCGAGTGCGCCGACACTGTCTCCAGTGACG
CAATTGCTGGTGGAGGAAGTGGACGAGGTAGTTGCCGCAAGCCTCGAGGG
AGGAGAGCCTTTCAACGGCCTCGACACGGCACGGGAGGTTCAGTTCCACG
CAGTGGGAAACCGGCGGGAGGAAGAATCTCTTGCGGGGACGATCGGTGGG
AAGGCCGGAAACAGCATTGGGTCGGTAGCGGAGGGGTTGGAGGCGGCTTG
GGTAAAGACTGAAGGTGGATTCAGCTGTGGGCAGAATGGTCGATTGGCAG
GGGATAGAGAGGCGGAAGGGAGAGAGGATGGGGCGGCGCTTCGGGATATC
AGCAATATCGAGCATGATGGCTTAATTGACGCGGTGATCCGCAAAGGACC
TTGA

Coding sequence (CDS) from alignment at KK037250.1:310347..311750-

>rna8853 ID=rna8853|Name=rna8853|organism=Nannochloropsis gaditana|type=CDS|length=1404bp|location=Sequence derived from alignment at KK037250.1:310347..311750- (Nannochloropsis gaditana)
ATGCAGAGGGCTCGGGACTTGGAGGCCGTGGTCGGGCAGACCTCCGCCGT
GGGGAGAGCCAAGGCGCAGGCCGGGGGGAAGACGAGGAAAGAGAAAGATG
AAACGGGGCCACAGTCGATGGCAAGCTCTGTCCTGCGTGGAGAAGAGGCG
TCGACGGTCGCCGGTTCCGGTCCCGTCGCCTTTTCGGGTGTCGCTTTTGA
CGCTCTTTCACCCTTGAGCCAGGGGGGGGAGATGACGGCGAGGGAGGAGG
CGCGGGAGGTGGAGCCCGTCAGGGAGGATGGAGAGGCTCGTAAAAGGAAG
AAGGATGAAAGTGAGAGTGAAAGAGGAGCACTACCACGTTCAGAGAGAGA
AGGAGAGGCAGGGAGAGGCGAGGGAGATGGGAAGGAAGAGATGCTCTCGG
AGGAGGGAAGTCTCGACACAGACAGTATCCTGGTGGCGGTGCCCAAACCC
CCCTCTCGGGTGGAGAACAAGAAGGGGGTGGGTGCAAAGGAAAGGGCTTC
ACGTGACTCCTCTCGTGTTGAGAAGGACAGGGCCCCGGAGTGTGAGGTCA
TGCCTTCTAAGGTTCTGTGCACGCCACCGGAGCGGCTCCGTTCCTCTCCC
ATTTCCGTTGTTTGTCCAGGCGGACGGGGGGGGGCACGGCGCCCAGAGCA
GCAGGCCCATCAGGTGCTGGGACAGGCGGCTGTGAGGGCCTCGGTATATC
GAGGGCGGGGCGGCTGGCAAGACGCGGCGGGGGGGGATGGGGAGGACAAC
GAGTTCATTGAGCGGGCGGGCCCTGGCCTGGAGGGGTCTCTGGCCTCAGA
GTCAACCTTGGTTTATCTCTCCCCAGAGGAGGAAAGAAGGATCTTCGAGC
AGCACCGGCGAGAGAAGGAATACTGGCGTCGGCGGTTTCAAAAGGAGGAA
GCGCCCCGCGAGGTCTCGCATGAAGGTGACGGCGATGTTAGCGTAAATGA
GGTGCTCAAGGGCAGTGACAGGCGGAGCGAAAGCAGGAGCAGTTTTGAAA
TTCATAGAAGTAGGAAAAGAGCGAGTGCGCCGACACTGTCTCCAGTGACG
CAATTGCTGGTGGAGGAAGTGGACGAGGTAGTTGCCGCAAGCCTCGAGGG
AGGAGAGCCTTTCAACGGCCTCGACACGGCACGGGAGGTTCAGTTCCACG
CAGTGGGAAACCGGCGGGAGGAAGAATCTCTTGCGGGGACGATCGGTGGG
AAGGCCGGAAACAGCATTGGGTCGGTAGCGGAGGGGTTGGAGGCGGCTTG
GGTAAAGACTGAAGGTGGATTCAGCTGTGGGCAGAATGGTCGATTGGCAG
GGGATAGAGAGGCGGAAGGGAGAGAGGATGGGGCGGCGCTTCGGGATATC
AGCAATATCGAGCATGATGGCTTAATTGACGCGGTGATCCGCAAAGGACC
TTGA

Synonyms

Publications