rna8850, rna8850 (mRNA) Nannochloropsis gaditana

Overview
Namerna8850
Unique Namerna8850
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1090
Alignment locationKK037250.1:302380..303151 +

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Properties
Property NameValue
ProductBromodomain protein
Orig transcript idgnl|cribi|Naga_100051g2.8889.mrna
Orig protein idgnl|cribi|Naga_100051g2.8889
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:302380..303151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100051g2gene8580Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8850rna8850-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21850.1cds8820Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8850 ID=rna8850|Name=rna8850|organism=Nannochloropsis gaditana|type=mRNA|length=1090bp
GCTGCCTTGGTTTTGAGGGTCCCGGTGGGGACTGGACAGCTCAAGAAAGA
AAAAAGACGCGTTACCCCTGGTGCTGATGCATGTATCCCCTCCCCACCTC
CACCCAGGCAACACAGATCTTCCCAGAGCCAGACACACCGAGTCAGGGAG
CTCATCAGCACCACATAACGAGGCAGTATGGCAGACGTGGAACGTAACGA
TGGTGAATATCAGTCGCAACAGCAGCAACAAGCGCAGCAGCAAGACTACG
AGAACGGGGGGCCGCCGCCCCGGCGCGGCGGCGATGGTCATGGAGAATAC
AACCAACCCAACAAGATCTTTGTGGGAGGCGTGGCCTGGCATACGACAGA
AGAAGGGCTGTCAAGCTATTTCGGCAAATATGGGGAGCTGACGGACGTGG
TGCTGATGCGGGACAAGAACACGGGCGGGCCTCGAGGCTTCGGCTTCGTG
TCCTTCGCTACGCCTGCAGCGATGGAGGCGGCCGTTTCCGAAGCCCACAT
GCTCGACGGCCGAAACCTCGACGTGAAGAAGGCGGTGCCGCGTGAACAGG
CACCTGCTCCAGTCCGAGCCATATGGGGGGGCACGGGTGCGGGGCCGCAG
CGACAGTTCCAAGACATCAAGAAAGTCTTTGTCGGGGGGTTGTCACCAGA
CGTGACCGAGGAAGCTTTCCGCGCCTATTTCGACAAATTCGGAGAGATAA
CGGACGCGGTCGTGATGATGGACAGGACCACGGGCCGCAGTCGCGGCTTC
GGCTTCGTCACTTACGCCGAGGAGGCGGCCATGAAGAAGGTGTTGAGTCA
GCAGCACGACATGGAGGGAAGGCCTATGGACGTGAAGAGGGCCGAGCCCA
AGGTCCCCGATGCAGGGGCTGGAGGAGGCTATTATAGCGGAGGGGGGGGG
GGAAGAGGGGGAGGGGGATCGTGGGGGGGGGCGCGGAGGAGGGGGGGGGG
GATACGGGGTACTATCACGGGGACGGCTACGGCGGGGGGGGGGGCTACAG
CGCCTACAGTAGCAGAGAGGGGGGGGCTACGGAGGGGTAGGATACGCGTC
GTCGTATCTGGGGGGGGGGGATACGGGCGAGGCGGGGGGC
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protein sequence of rna8850

>rna8850-protein ID=rna8850-protein|Name=rna8850|organism=Nannochloropsis gaditana|type=polypeptide|length=213bp
MDHSTSEACLKILGRLRKSHRTFAASKDTLVGLTAYVDRVENPWDLAMVD
KALKHGEIVSPSALVQLLRRPASNCLRFCIEKGNAPYREKARHLLIQVDS
ELRGHPWLGVAPLPASTYTCLDLLEQLVIPHQELRMFWARVENLVHASLR
AEYAASVDLPMDMGRLTSELLEEGISAAEFLAKAEVVFSNCIQFWSAHND
SESVARRVASFVL
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mRNA from alignment at KK037250.1:302380..303151+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8850 ID=rna8850|Name=rna8850|organism=Nannochloropsis gaditana|type=mRNA|length=772bp|location=Sequence derived from alignment at KK037250.1:302380..303151+ (Nannochloropsis gaditana)
ATGGACCACAGCACGTCAGAGGCCTGCCTGAAAATCCTTGGAAGGCTCAG
AAAGTCGCACCGCACTTTTGCCGCCAGCAAGGACACTTTGGTTGGTTTGA
CTGCGTATGTCGATCGAGTGGAGAACCCGTGGGACCTGGCCATGGTGGAC
AAGGCCCTGAAACACGGAGAGAtcgtctcgccctccgccttggtcCAGCT
CCTGCGGCGGCCCGCCAGTAATTGCCTCCGCTTTTGTATCGAGAAGGGCA
ATGCCCCGTATCGCGAAAAGGCACGGCATCTCCTCATTCAGGTGGACAGC
GAGCTGCGGGGGCATCCTTGGCTGGGGGTGGCACCGTTGCCGGCCTCGAC
CTACACGTGCCTCGACCTCTTGGAGCAGCTCGTCATCCCCCACCAGGAGC
TCCGCATGTTCTGGGCGCGCGTGGAGAACCTcgtgcatgcctccctccgt
gcgGAGTATGCGGCCAGCGTGGACCTGCCCATGGACATGGGCCGCCTGAC
CTCCGAGCTCTTGGAAGAGGGCATCTCCGCGGCCGAGTTTTTGGCCAAGG
CAGAAGTCGTCTTCAGCAACTGCATCCAGTTTTGGAGTGCTCACAACGAC
AGCGAgtcggtggcggtgggagagaggggaaaagccttGCTGGAAAGCTT
GGCCACAAAGCTGCTACCGGACGCTTGGCAGGCCcggcgcctgccccccc
tgaGTCGaagcttcccccccccggggcgacttgctttcttcccagCGCAG
GGTCGCGTCGTTCGTTCTCTGA
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Coding sequence (CDS) from alignment at KK037250.1:302380..303151+

>rna8850 ID=rna8850|Name=rna8850|organism=Nannochloropsis gaditana|type=CDS|length=1284bp|location=Sequence derived from alignment at KK037250.1:302380..303151+ (Nannochloropsis gaditana)
ATGGACCACAGCACGTCAGAGGCCTGCCTGAAAATCCTTGGAAGGCTCAG
AAAGTCGCACCGCACTTTTGCCGCCAGCAAGGACACTTTGGTTGGTTTGA
CTGCGTATGTCGATCGAGTGGAGAACCCGTGGGACCTGGCCATGGTGGAC
AAGGCCCTGAAACACGGAGAGAtcgtctcgccctccgccttggtcCAGCT
CCTGCGGCGGCCCGCCAGTAATTGCCTCCGCTTTTGTATCGAGAAGGGCA
ATGCCCCGTATCGCGAAAAGGCACGGCATCTCCTCATTCAGGTGGACAGC
GAGCTGCGGGGGCATCCTTGGCTGGGGGTGGCACCGTTGCCGGCCTCGAC
CTACACGTGCCTCGACCTCTTGGAGCAGCTCGTCATCCCCCACCAGGAGC
TCCGCATGTTCTGGGCGCGCGTGGAGAACCTcgtgcatgcctccctccgt
gcgGAGTATGCGGCCAGCGTGGACCTGCCCATGGACATGGGCCGCCTGAC
CTCCGAGCTCTTGGAAGAGGGCATCTCCGCGGCCGAGTTTTTGGCCAAGG
CAGAAGTCGTCTTCAGCAACTGCATCCAGTTTTGGAGTGCTCACAACGAC
AGCGAgtcggtggcgCGCAGGGTCGCGTCGTTCGTTCTCTGAATGGACCA
CAGCACGTCAGAGGCCTGCCTGAAAATCCTTGGAAGGCTCAGAAAGTCGC
ACCGCACTTTTGCCGCCAGCAAGGACACTTTGGTTGGTTTGACTGCGTAT
GTCGATCGAGTGGAGAACCCGTGGGACCTGGCCATGGTGGACAAGGCCCT
GAAACACGGAGAGAtcgtctcgccctccgccttggtcCAGCTCCTGCGGC
GGCCCGCCAGTAATTGCCTCCGCTTTTGTATCGAGAAGGGCAATGCCCCG
TATCGCGAAAAGGCACGGCATCTCCTCATTCAGGTGGACAGCGAGCTGCG
GGGGCATCCTTGGCTGGGGGTGGCACCGTTGCCGGCCTCGACCTACACGT
GCCTCGACCTCTTGGAGCAGCTCGTCATCCCCCACCAGGAGCTCCGCATG
TTCTGGGCGCGCGTGGAGAACCTcgtgcatgcctccctccgtgcgGAGTA
TGCGGCCAGCGTGGACCTGCCCATGGACATGGGCCGCCTGACCTCCGAGC
TCTTGGAAGAGGGCATCTCCGCGGCCGAGTTTTTGGCCAAGGCAGAAGTC
GTCTTCAGCAACTGCATCCAGTTTTGGAGTGCTCACAACGACAGCGAgtc
ggtggcgCGCAGGGTCGCGTCGTTCGTTCTCTGA
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Synonyms
Publications