rna8847, rna8847 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8847
Unique Name	rna8847
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3531
Alignment location	KK037250.1:298135..300058 +

Link to JBrowse

Properties


Property Name	Value
Product	nadph:adrenodoxin mitochondrial
Orig transcript id	gnl\|cribi\|Naga_100169g18.559.mrna
Orig protein id	gnl\|cribi\|Naga_100169g18.559
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:298135..300058 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100169g18	gene8577	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8847	rna8847-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21868.1	cds8817	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:298135..300058+
coding sequence from alignment at KK037250.1:298135..300058+

mRNA sequence

>rna8847 ID=rna8847|Name=rna8847|organism=Nannochloropsis gaditana|type=mRNA|length=3531bp
GCAGGGAGGCGGCCCACTGCACGTAAAAGTGATCTTCCTTCCCTTGGCTA
CCTATGGCCACGGCCAGTGCTCGTGTCGCGGTCAGTATAGCCGCTGCGGA
TAAGGAAAATGTGGCGCCAGCAATCCCGATGGGCAAAGGAGGGGTGGCAC
GACGGAAAGGTCTGTCCACGATCACGCTGGGTGCGGGGCACTTGGCGAAT
GTCCTTCGAGAAGGTGGGGGTAATGCAGACGCTGATGCGAGCAGGAAAAC
CCCCTTAACATCGTGCGAGGAGCATGCTTTACCACGACTTCTACTCTTCG
CGGAGAGGGCAGACGAGGTGTTCATGCTGGGGGAGGGCTTGCCAGAAAGC
GAGGCCAGACGAGAGCTAGCTCAAGCAGTGATGGAAGATAGGGGCAATCC
TTCGGTGTGGTGGCACCTCTTGCAGCACGTGCATCGAGTCTTCGGTGAAT
CCGAGTCCTGTGCACCTGCCGAGGCGGCCCACATCCGTAAGTTCTACCAG
AAAGCCACCCGCATCATCCCCGACGGCCCTTCCCGGGACAAAGAGGATCC
TGCATTGGTCAACATATGGTTAGGATTTGCCGCGGCCGAAAATTGCGTGA
GCGAATCGGACGCACGAGAGGCCTATGAACACATGTATCGCTGCGGGATA
GGCTCTCGGTCGTCTAGCTTCTATCTGAAGTTCGCTGCCTTCGAGGAAAA
GCAAGGGAGGATTACCGAGGCACTTGCTCTTTTAGAGTCGGGCATCTCGC
GGGGGGCGGCGCCGTTGGAGACTCTTGTCGCCGAACTTGAGAGGTTACGA
AGCAGGAAACCTTTAGTAGCATCCAGAATTGCAGCTCCTTTGCCGAGTAC
CTTCTCAACCCGCTCTCCGCCCTCCGTTGCGCCTTCCCCCGACTTAACAA
TTGAAGCCAGTGGTGTTGCTGACCGAGATTCAGGAACGCAGCAACCTCAC
CCAAGTCAGCCGCCAAGAGTGGAGGAGCGGGAGCATGACCGGGCGCGTCC
CGGGCCGCCCTCGACGCCTGCTGCGGCAGTGACCGAGACGGCAAAGGCCC
CGGTGCCGCCCGCTGTCACACCTCAGGCACAACCTACAGGCACAATCGAC
GCCAGCATGCAGCAACAGGCCGGGATACTCTCTCCAACTCCCGCCTCTGC
CAGGGCCGACCTGCTTCATTCGTCGCACAAGGACGACTCGACAAACCAGG
GGTCCACGCGGACACAGCCTCGAACAGTCAGCAAATCGAAAAGACTCCTG
CCCACCGGAAGACTCTTGGGGCTGGGAAAGGCGGAACGCGTGCGCTTCGA
CACCCCCGGCAAAGCGGACGGGGAAGCAGAGAAGGTGACGGGGGGTGGGG
GCAGTAAGTGCGACGCCGACTTCTGTCCTCCCCCTCCCGAGAAATGCTTG
GCGACCCCCTCCACCGGAAGCGCCGAGGCTCATGCTCCAGTGCCTGTAGC
TACGACCCCAGCCAAGCCCGACACGCATCGCCTGCAGGATCTGCGCCTCG
CGTCCCCCTCCTTGACGGCGCTGCACCCGATACTGGAGGGCGATCAGAGC
GCGGGGAAGGAGGAAAGGGGCTCCGAGGACACGGCTCATGGTCAGCAGGC
ATCTGTGCAGCAGACTCCTGGGGAGACTGCCTTCCGTCCGCTCGCGGCAA
AGACACCCCATCTCAACAGTGCCAGGGCTACCCTCCCACCCCCCTCCCTC
GCCTGTCTCCCCTCCCCTGCCGCCGCCTCTAGCCGTTCCTCGGATTCGCC
AAAAGAGGATCTTCCGGGATCGGGCAGAAAGCAGAAATTTGACACCGACG
AGGCGCACACAAGAGATCGGGGTCGAGTGTCCGCGGTCACGCACGAGTCC
GTGCAGATAGAGGACAAGGGATCCCTTGACTATGACGGAAAAGATCAGAA
GCGGGCGATAAAGCAGCAGCAAGAAGAACTTCAAACACCACTTGACCACT
ATTCTCGGCGACACGAGCAGCAGCCCCGGCGGCATACGGAGGAAGGCATC
AGAGAGGACAAAATTGCGGGAACGCCCGCGTCCCGCAACGCCGGTGCCCC
CCTCCAGCTTCAGGATCAGCCACACCACTATGTCAGCCAGCACCCGCAAA
GCCATCGACCTTCCCCATCTCCTTTTTCCAGACCAGAAGCTCAGCCACCA
CATCATCATGCACCACCGCCTTCACAACACCAACAAGAACACCAAGAGCA
GCGGCAGCAGCAGCAGCGTGAAACACGTTCGAAGCATCCCGAGCACCTAC
AGCAACCAGCATCCCAAACTTTCTCTTTTGACATGCTACTCTCCTCCCGA
AATTTCATGACCCTGAACAACACCCAGTACCTACGACTCGACGTCCTTGG
CCGGGGGGGAAGCAGCAAAGTGTTCCGCGTGCTGTCGGAATCCGGACGAA
TCTATGCCCTGAAGCGCGTACGCGTGCCTCCGAAAGACAGGAAGGCCCTG
GAGTCCTTCGCCAACGAGATCACCCTACTTGCACGTTTGCGAGGCCACCC
TTGCATCATTCAATTGATAGATTCAACTGTCGATAAGGCGACGGGATTGG
TTTTGATGCTGATGGAGTTGGGGGAGATTGATTTGAGCAAGCTCCTCGCT
GAGCAGGCGGCGGCAGAGGCGCTCGACGCCGGCAACGACTCCAGGGGAAA
GGGGCGGAGACCGCTGAGCTTGAACTTTGTCCGCTTTGTGTGGGAGCAGA
TGCTCCGGGCCGTGCATTGCGTCCACGAGGAGCGTATTGTCCACGGTGAC
CTGAAGCCCGCGAACTTCGTTTTTGTGCGAGGACGGCTGAAGTTGATCGA
TTTCGGGATTGCCAAGGCGATAGGAAATGACACCACCAACATCATGCGAG
AGTCCCAGGTAGGTACTGTCAATTATATGTCACCAGAAGCCATCCTTGAT
ACTGGGAACGGTCGCGAGCAGCCCGGCGCGGGGGGCCGCCGGGCGCCTTG
CATGAAGATAGGCCGGGCGAGTGACGTCTGGTCCTTGGGCTGCATTTTGT
ACCAGCTCGTGTACGGCAAGACTCCGTTCGCAGACCTCAATTTGATCCAG
AAACTGCACTGCATCGTAGACGAGCGCTATCAAATTGCTTTTCCCGACGA
TGAATTGCACTTCTTAGATCCCGATGTGCGTGACACCATCCAACAGTGCC
TTCGGAGAGACCCCACGGCGCGCCCCCCGATAGCCGGTGGAACTTCCAGC
CTTTTGCAGCACCCCTTTCTCCAGTCTACGGGCAAAGGGTCTGACTCCCA
TATTTGTCAGACGATTCAAGCGACGCTTGAGGTCTTGGATCAGTACCCTG
ATGTTCTGACTCTGGAGAAGGGGAAGCGTGTCGGAAGCATCTTCGAGCGG
TTGAATGGACGGAAGGAACCGCTTGGCAACGCTAAAAGGTAGCGCAGATA
GCAAGTAATGTAAATTTAATTCACACACCTCGATGAGCAGTAACCCTTTC
CTTTGCAATGGATCGCTGTTGAGAGTTCATGTTTTTTACTTTTTTAACAT
CTGTACTTCGATCTTAACCTCCTATTAAAGA

protein sequence of rna8847

>rna8847-protein ID=rna8847-protein|Name=rna8847|organism=Nannochloropsis gaditana|type=polypeptide|length=524bp
MYTLRQYAVRCHRRQPVAAGPFVEFASRKHHVCFSTNPLYGTASNIISRV
GIVGAGPSGFYVAKYLLKELGPGATVDVMDSLPTPFGLVRTGVAPDHPEV
KAVQSDFEKVAGDPRFSFYGNVRVGYDVDVATLRSLYDVLVLAYGASEDR
TLGIPGEDTLEGVVSARTFVNWYNGHPDYAQDAKLTGMLGEILAQASAQV
AVLGQGNVALDCARVLAKRPADLETSDICEHALEVLRESKLAAVSVVGRR
GHGQAAFTIKELRELSRIPGARLVVPPEEVAMGLTEFTIAELAQSRPRKR
LTDLVASLPGPAVGGQAGEGRERVVALRFLLLPRAFLPDPRRPRRLGAVV
FERARLELDGQGKRVVAVGTGETEELPCQLALRSIGYKSQPVEGLPFDNK
KAVVPNRHGRVLEAASEEAVPVPGVYCTGWVKRGPSGIINTNIYDARETV
AAIMEDATQGKLPFSSSSSLLEALAQAGRKKPEDVVSWEGYGKIDAWERR
HGAARGKPREKVTDSRRLLEIARS

mRNA from alignment at KK037250.1:298135..300058+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8847 ID=rna8847|Name=rna8847|organism=Nannochloropsis gaditana|type=mRNA|length=1924bp|location=Sequence derived from alignment at KK037250.1:298135..300058+ (Nannochloropsis gaditana)
CTTCAGGAAGAAGTCTGCGAGGAGCGTAACTTTGGATTAGGCGTTGCACT
GTCCTATGAGATTGTCGACCCGGACTACAACTTTGAGATTTGTTTGTTCT
AACGCACGGAGACGTGTTGAAGTGAGAAATGCTGGGTCAATCGTCCTCAT
AAAATAAAATTGTAAAACCGTCTCAGGTCCCGATTCTCACaatttttttt
tggggggggacAGCTAGGTATGTACACGTTGCGACAGTATGCTGTACGTT
GTCATAGGCGACAGCCCGTTGCCGCAGGGCCTTTTGTGGAGTTCGCATCT
CGGAAGCATCACGTCTGCTTCTCTACGAACCCCCTTTATGGGACTGCGTC
AAATATCATCAGTCGAGTAGGAATTGTGGGTGCTGGGCCCTCAGGTTTCT
ATGTGGCCAAGTATTTGCTGAAAGAGTTGGGGCCTGGCGCAACGGTAGAT
GTCATGGACTCTCTCCCCACACCCTTTGGCTTGGTGCGTACAGGGGTCGC
GCCCGACCATCCTGAGGTAAAAGCCGTCCAGAGTGACTTCGAAAAAGTGG
CAGGAGACCCTCGTTTTTCTTTTTATGGAAATGTTCGAGTAGGCTACGAC
GTGGATGTAGCGACATTGCGCAGTTTGTACGATGTGTTGGTCTTGGCGTA
CGGGGCATCGGAGGATCGAACGCTTGGAATTCCGGGAGAGGATACCCTGG
AAGGAGTGGTCAGTGCTCGCACGTTCGTTAACTGGTATAACGGCCATCCA
GACTATGCGCAAGATGCCAAGCTAACAGGCATGCTCGGGGAGATCCTGGC
GCAGGCCTCCGCCCAAGTCGCCGTATTGGGTCAAGGCAATGTGGCCTTGG
ATTGCGCCCGCGTGCTGGCGAAGCGACCGGCAGACCTGGAGACAAGCGAC
ATTTGCGAGCATGCCCTGGAGGTGTTGCGGGAAAGCAAGCTGGCTGCCGT
GTCAGTGGTGGGACGGCGGGGGCACGGACAGGCGGCCTTCACCATCAAGG
AGCTCCGGGAACTCTCTCGGATCCCGGGCGCCAGGCTGGTGGTGCCTcca
gaggaggtggcgatggGCTTGACAGAATTTACAATCGCAGAGCTCGCGCA
GTCTAGACCCCGGAAGCGGCTGACAGATTTGGTGGCCTCCTTACCCGGCC
ccgcggtgggagggcaggctggagagggacgggaacGGGTGGTGGCGCTC
AGattcctgctcctgcctcgGGCGTTCCTGCCAGACCCACGGCGGCCGCG
TCGGCTGGGCGCCGTTGTCTTTGAACGTGCCCGCCTGGAGCTGGACGGAC
AGGGAAAGCGcgtggtggccgtggggACAGGCGAGACAGAGGAGCTGCCC
TGTCAACTGGCCCTTCGCTCCATCGGCTACAAGTCTCAGCCTGTGGAGGG
TCTTCCCTTCGACAACAAGAAGGCAGTGGTGCCAAACAGACATGGCCGCG
TGCTGGAAGCCGCCAGTGAAGAAGCGGTGCCCGTCCCAGGCGTCTATTGC
ACGGGCTGGGTGAAACGAGGCCCCTCGGGGATTATCAACACGAACATATA
CGACGCCCGAGAGACCGTGGCCGCCATCATGGAGGACGCTACGCAAGGAA
AGttgcccttctcttcctcctcctccttgctcgaGGCGCTCGCCCAAGCG
GGGCGCAAGAAGCCGGAGGATGTGGTGTCCTGGGAGGGCTACGGGAAGAT
CGATGCCTGGGAGCGTCGCCATGGGGCCGCGCGAGGGAAGCCTAGAGAGA
AGGTCACGGATAGCCGCCGGCTTCTGGAGATCGCCCGAAGTTGAGCTGTG
GTGGCGGGCTGCAGGTTGTAATGACTTTCATTTCTTAATCGCTCACTCAT
GTGGCAAATAGTGCATACCTGGAAAAGCTACAACAATGTAAATGTAGAGA
TTTAAAGAGTTTTAATAGTGTatt

Coding sequence (CDS) from alignment at KK037250.1:298135..300058+

>rna8847 ID=rna8847|Name=rna8847|organism=Nannochloropsis gaditana|type=CDS|length=1575bp|location=Sequence derived from alignment at KK037250.1:298135..300058+ (Nannochloropsis gaditana)
ATGTACACGTTGCGACAGTATGCTGTACGTTGTCATAGGCGACAGCCCGT
TGCCGCAGGGCCTTTTGTGGAGTTCGCATCTCGGAAGCATCACGTCTGCT
TCTCTACGAACCCCCTTTATGGGACTGCGTCAAATATCATCAGTCGAGTA
GGAATTGTGGGTGCTGGGCCCTCAGGTTTCTATGTGGCCAAGTATTTGCT
GAAAGAGTTGGGGCCTGGCGCAACGGTAGATGTCATGGACTCTCTCCCCA
CACCCTTTGGCTTGGTGCGTACAGGGGTCGCGCCCGACCATCCTGAGGTA
AAAGCCGTCCAGAGTGACTTCGAAAAAGTGGCAGGAGACCCTCGTTTTTC
TTTTTATGGAAATGTTCGAGTAGGCTACGACGTGGATGTAGCGACATTGC
GCAGTTTGTACGATGTGTTGGTCTTGGCGTACGGGGCATCGGAGGATCGA
ACGCTTGGAATTCCGGGAGAGGATACCCTGGAAGGAGTGGTCAGTGCTCG
CACGTTCGTTAACTGGTATAACGGCCATCCAGACTATGCGCAAGATGCCA
AGCTAACAGGCATGCTCGGGGAGATCCTGGCGCAGGCCTCCGCCCAAGTC
GCCGTATTGGGTCAAGGCAATGTGGCCTTGGATTGCGCCCGCGTGCTGGC
GAAGCGACCGGCAGACCTGGAGACAAGCGACATTTGCGAGCATGCCCTGG
AGGTGTTGCGGGAAAGCAAGCTGGCTGCCGTGTCAGTGGTGGGACGGCGG
GGGCACGGACAGGCGGCCTTCACCATCAAGGAGCTCCGGGAACTCTCTCG
GATCCCGGGCGCCAGGCTGGTGGTGCCTccagaggaggtggcgatggGCT
TGACAGAATTTACAATCGCAGAGCTCGCGCAGTCTAGACCCCGGAAGCGG
CTGACAGATTTGGTGGCCTCCTTACCCGGCCccgcggtgggagggcaggc
tggagagggacgggaacGGGTGGTGGCGCTCAGattcctgctcctgcctc
gGGCGTTCCTGCCAGACCCACGGCGGCCGCGTCGGCTGGGCGCCGTTGTC
TTTGAACGTGCCCGCCTGGAGCTGGACGGACAGGGAAAGCGcgtggtggc
cgtggggACAGGCGAGACAGAGGAGCTGCCCTGTCAACTGGCCCTTCGCT
CCATCGGCTACAAGTCTCAGCCTGTGGAGGGTCTTCCCTTCGACAACAAG
AAGGCAGTGGTGCCAAACAGACATGGCCGCGTGCTGGAAGCCGCCAGTGA
AGAAGCGGTGCCCGTCCCAGGCGTCTATTGCACGGGCTGGGTGAAACGAG
GCCCCTCGGGGATTATCAACACGAACATATACGACGCCCGAGAGACCGTG
GCCGCCATCATGGAGGACGCTACGCAAGGAAAGttgcccttctcttcctc
ctcctccttgctcgaGGCGCTCGCCCAAGCGGGGCGCAAGAAGCCGGAGG
ATGTGGTGTCCTGGGAGGGCTACGGGAAGATCGATGCCTGGGAGCGTCGC
CATGGGGCCGCGCGAGGGAAGCCTAGAGAGAAGGTCACGGATAGCCGCCG
GCTTCTGGAGATCGCCCGAAGTTGA

Synonyms

Publications