rna8846, rna8846 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8846
Unique Name	rna8846
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1824
Alignment location	KK037250.1:294512..298042 +

Link to JBrowse

Properties


Property Name	Value
Product	ttk family protein kinase
Orig transcript id	gnl\|cribi\|Naga_100169g17.552.mrna
Orig protein id	gnl\|cribi\|Naga_100169g17.552
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:294512..298042 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100169g17	gene8576	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8846	rna8846-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21861.1	cds8816	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:294512..298042+
coding sequence from alignment at KK037250.1:294512..298042+

mRNA sequence

>rna8846 ID=rna8846|Name=rna8846|organism=Nannochloropsis gaditana|type=mRNA|length=1824bp
GTTGCAGCAAGTTGGTCACGCCGGAAGTCACTTAAAATGCCAAAATAATG
TGCTGGGGGTCTCGAAAGCGCATGATCGATATCACACAGACTCACATTTA
TCCTTTTCCTCATAAAAGGATGGTGCGATGGAAATATTACCTGGCATCGA
GCATTTCAAGACACCTGCCGCTCTTGTTGGTGATGCAGATACTTGTGTCG
CACGCCTTTTTCACGCGCCCACTCCCCGCTTGCGCGCCCCTCAAGGCTTC
CCTTCTCTCCGTAAGGGCTGCAAGGGGGATTGATGGCTGGCAAAATGATG
ACGCACCGCGGTATCGATCCCGTGGAGTTTCCGCCAACAAGCATGAAGTC
CTGGGTATAGTTCACGACCAGGGCAAAAAGCTTTACCCTGCATCGACGTC
CTTGTACCCTCAAGCCTTTTGTAAAATCCTTCCAGACATGTGGAGTAACG
ACCCAGAAGCAGCGCTTGTAATGCATGCAGATGGAGCGGGGAGCAAAGCT
GCGTTGGCGTACGCGTATTGGCGTGAAACGGGAGACGTGTCCGTATGGAA
GGGAATCGCTCAGGATGCCTTGGTGATGAATTTGGATGATGTGTATTGCG
CAGGGGCGTGGCGCGCACCCTGCCTCGTCACGTCTACCATCGCAAGAAAT
CGCCGCTTGGTGCCTGGACTCGTAGTGAAGCATTTGATCGACGGCTTGGA
GGAGGTCGCGGAGGAACTGCGGCCTTGGGGCGTGGCCGTCGGGATGGCCG
GGGGGGAGACTGCCGACCTGGGGGATCAGGTCAGGACGCTGACGGTGGAC
TGTACCTTGGCCACGCGAATGGCCCGCGCAGACGTTGTCGATAACGGAAA
CATCCAAGCGGGCGACTGGATTGTGGGCCTTGGCTCCTCGGGGCCGCCCA
CGAAGTACGAGGCGAGCGCAGCAGACCCCGGTGCCATGTACAACAGCGGG
ATAGGAAGCAACGGCTTGACCGCAGCGCGGCACGATGTGCTCGCGCCCGC
GGTAGGCAAATGCTATCCTGAGACGTACGATCCGGCGCTGCAAGATACGG
CGTATTGTGGGAGCCGACTGCTGACCGACCTTGTGGAGATCCCAGGCGGA
AGAGGCACGGGCCAGATGACGGTCGGGAAGCTTCTACTTTCACCCACGCG
CACCTACGCCCCGTTTCTCGCTCAGCTCTTCGAATCGAGTCGTGGCATCC
AAGATCACATCCACGGAATCGTCCACTGCACAGGAGGGGGGCAAACGAAG
GTGTTGCGTTGCCTGCCTCCGGGCAGGCCGGTCCACGTGGTGAAGGACGC
CCTATTCCCCACGCCCCCGGTGTTTCAGATGATTGCCCAGGAGCAGCGAA
AGCAGGGGGAAGGGGTCTGGAAAGAGGGTGTCCGTTGGGCGCAGGAGGGG
CAGAAAGGGAAAGATACAGGCATCAGCGAGGCCTGGCGCGAGATGTACCA
AGTCTTTAATATGGGCCATCGGATGGAGCTGTACATTGGAGGTGGGGAGC
GGCATGCCAACACGGTGATAGAAATGGCTGAAGCCTTGGGGTTGACGGCA
AAAGTCGTTGGTCATGTGGAGGAGGAAGGGGGCGTGAACGGGGGGAGGCA
CTGTCTTACAGTGCATCATGCGAATGTAGCGAAGAATGGAGGAACACAAA
AGTTCGTGTATACATAACTATGTGGACTGGCGTCATGACACGCATGGACA
GGAAAATAATATATGGGGGGGGAATCCTGAGCTCGGTGGGTCGTCATTGC
TTGTTGAGTTTCCCGTATCTCTTCTTGTCTTTGAAATTCAACCTCGCACT
CCCGCTTCGTCACAGAGAAGGATC

protein sequence of rna8846

>rna8846-protein ID=rna8846-protein|Name=rna8846|organism=Nannochloropsis gaditana|type=polypeptide|length=1112bp
MATASARVAVSIAAADKENVAPAIPMGKGGVARRKGLSTITLGAGHLANV
LREGGGNADADASRKTPLTSCEEHALPRLLLFAERADEVFMLGEGLPESE
ARRELAQAVMEDRGNPSVWWHLLQHVHRVFGESESCAPAEAAHIRKFYQK
ATRIIPDGPSRDKEDPALVNIWLGFAAAENCVSESDAREAYEHMYRCGIG
SRSSSFYLKFAAFEEKQGRITEALALLESGISRGAAPLETLVAELERLRS
RKPLVASRIAAPLPSTFSTRSPPSVAPSPDLTIEASGVADRDSGTQQPHP
SQPPRVEEREHDRARPGPPSTPAAAVTETAKAPVPPAVTPQAQPTGTIDA
SMQQQAGILSPTPASARADLLHSSHKDDSTNQGSTRTQPRTVSKSKRLLP
TGRLLGLGKAERVRFDTPGKADGEAEKVTGGGGSKCDADFCPPPPEKCLA
TPSTGSAEAHAPVPVATTPAKPDTHRLQDLRLASPSLTALHPILEGDQSA
GKEERGSEDTAHGQQASVQQTPGETAFRPLAAKTPHLNSARATLPPPSLA
CLPSPAAASSRSSDSPKEDLPGSGRKQKFDTDEAHTRDRGRVSAVTHESV
QIEDKGSLDYDGKDQKRAIKQQQEELQTPLDHYSRRHEQQPRRHTEEGIR
EDKIAGTPASRNAGAPLQLQDQPHHYVSQHPQSHRPSPSPFSRPEAQPPH
HHAPPPSQHQQEHQEQRQQQQRETRSKHPEHLQQPASQTFSFDMLLSSRN
FMTLNNTQYLRLDVLGRGGSSKVFRVLSESGRIYALKRVRVPPKDRKALE
SFANEITLLARLRGHPCIIQLIDSTVDKATGLVLMLMELGEIDLSKLLAE
QAAAEALDAGNDSRGKGRRPLSLNFVRFVWEQMLRAVHCVHEERIVHGDL
KPANFVFVRGRLKLIDFGIAKAIGNDTTNIMRESQVGTVNYMSPEAILDT
GNGREQPGAGGRRAPCMKIGRASDVWSLGCILYQLVYGKTPFADLNLIQK
LHCIVDERYQIAFPDDELHFLDPDVRDTIQQCLRRDPTARPPIAGGTSSL
LQHPFLQSTGKGSDSHICQTIQATLEVLDQYPDVLTLEKGKRVGSIFERL
NGRKEPLGNAKR

mRNA from alignment at KK037250.1:294512..298042+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8846 ID=rna8846|Name=rna8846|organism=Nannochloropsis gaditana|type=mRNA|length=3531bp|location=Sequence derived from alignment at KK037250.1:294512..298042+ (Nannochloropsis gaditana)
GCAGGGAGGCGGCCCACTGCACGTAAAAGTgatcttccttcccttggctA
CCTATGGCCACGGCCAGTGCTCGTGTCGCGGTCAGTATAGCCGCTGCGGA
TAAGGAAAATGTGGCGCCAGCAATCCCGatgggcaaaggaggggtggCAC
GACGGAAAGGTCTGTCCACGATCACGCTGGGTGCGGGGCACTTGGCGAAT
GTCCTtcgagaaggtgggggtAATGCAGACGCTGATGCGAGCAGGAAAAC
CCCCTTAACATCGTGCGAGGAGCATGCTTTACCACGACTTCTACTCTTCG
CGGAGAGGGCAGACGAGGTGTTCATGCTGGGGGAGGGCTTGCCAGAAAGC
GAGGCCAGACGAGAGCTAGCTCAAGCAGTGATGGAAGATAGGGGCAATCC
TTCGGTGTGGTGGCACCTCTTGCAGCACGTGCATCGAGTCTTCGGTGAAT
CCGAGTCCTGTGCACCTGCCGAGGCGGCCCACATCCGTAAGTTCTACCAG
AAAGCCACCCGCATCATCCCCGACGGCCCTTCCCGGGACAAAGAGGATCC
TGCATTGGTCAACATATGGTTAGGATTTGCCGCGGCCGAAAATTGCGTGA
GCGAATCGGACGCACGAGAGGCCTATGAACACATGTATCGCTGCGGGATA
GGCTCTCGGTCGTCTAGCTTCTATCTGAAGTTCGCTGCCTTCGAggaaaa
gcaagggaggatTACCGAGGCACTTGCTCTTTTAGAGTCGGGCATCTCGC
GGGGGGCGGCGCCGTTGGAGACTCTTGTCGCCGAACTTGAGAGGTTACGA
AGCAGGAAACCTTTAGTAGCATCCAGAATTGCAGCTCCTTTGCCGAGTAC
CTTCTCAACccgctctccgccctccgTTGCGCCTTCCCCCGACTTAACAA
TTGAAGCCAGTGGTGTTGCTGACCGAGATTCAGGAACGCAGCAACCTCAC
CCAAGTCAGCCGCCAAGagtggaggagcgggagcatGACCGGGCGCGTCC
CGGGCCGCCCTCGACGCCTGCTGCGGCAGTGACCGAGACGGCAAAGGCCC
CGGTGCCGCCCGCTGTCACACCTCAGGCACAACCTACAGGCACAATCGAC
GCCAGCATGCAGCAACAGGCCGGGATACTCTCTCCAACTCCCGCCTCTGC
CAGGGCCGACCTGCTTCATTCGTCGCACAAGGACGACTCGACAAACCAGG
GGTCCACGCGGACACAGCCTCGAACAGTCAGCAAATCGAAAAGACTCCTG
CCCACCGGAAGACTCTTGGGGCTGGGAAAGGCGGAACGCGTGCGCTTCGA
CACCCCCGGCAAAGCGGACGGGGAAGCAGAGAAGGTgacggggggtgggg
gcagTAAGTGCGACGCCGActtctgtcctccccctcccgagaAATGCTTG
GCGACCCCCTCCACCGGAAGCGCCGAGGCTCATGCTCCAGTGCCTGTAGC
TACGACCCCAGCCAAGCCCGACACGCATCGCCTGCAGGATCTGCGCCTcg
cgtccccctccttgacggCGCTGCACCCGATACTGGAGGGCGATCAgagc
gcggggaaggaggaaaggggctcCGAGGACACGGCTCATGGTCAGCAGGC
ATCTGTGCAGCAGACTCCTGGGGAGACTGCCTTCCGTCCGCTCGCGGCAA
AGACACCCCATCTCAACAGTGCCAGGGctaccctcccacccccctccctc
gcctgtctcccctcccctgccgccgcctctaGCCGTTCCTCGGATTCGCC
AAAAGAGGATCTTCCGGGATCGGGCAGAAAGCAGAAATTTGACACCGACG
AGGCGCACACAAGAGATCGGGGTCGAGTGTCCGCGGTCACGCACGAGTCC
GTGCAGATAGAGGACAAGGGATCCCTTGACTATGACGGAAAAGATCAGAA
GCGGGCGataaagcagcagcaagaagaaCTTCAAACACCACTTGACCACT
ATTCTCGGCGACACGAGCAGCAGCCCCGGCGGCATACGGAGGAAGGCATC
AGAGAGGACAAAATTGCGGGAACGCCCGCGTCCCGCAACGCCGGTGCCCC
CCTCCAGCTTCAGGATCAGCCACACCACTATGTCAGCCAGCACCCGCAAA
GCCATCGAccttccccatctccttTTTCCAGACCAGAAGCTCAGCCACCA
CATCATCAtgcaccaccgccttcacAACACCAACAAGAACACCAagagca
gcggcagcagcagcagcgtgaAACACGTTCGAAGCATCCCGAGCACCTAC
AGCAACCAGCATCCCAAACTTTCTCTTTTGACATGCTACTCTCCTCCCGA
AATTTCATGACCCTGAACAACACCCAGTACCTACGACTCGACGTCcttgg
ccgggggggaagcagcaaAGTGTTCCGCGTGCTGTCGGAATCCGGACGAA
TCTATGCCCTGAAGCGCGTACGCGTGCCTCCGAAAGACAGGAAGGCCCTG
GAGTCCTTCGCCAACGAGATCACCCTACTTGCACGTTTGCGAGGCCACCC
TTGCATCATTCAATTGATAGATTCAACTGTCGATAAGGCGACGGGATTGG
TTTTGATGCTGATGGAGTTGGGGGAGATTGATTTGAGCAAGCTCCTCGCT
gagcaggcggcggcagaggcgCTCGACGCCGGCAACGACTccaggggaaa
ggggcggaGACCGCTGAGCTTGAACTTTGTCCGCTTTGTGTGGGAGCAGA
TGCTCCGGGCCGTGCATTGCGTCCACGAGGAGCGTATTGTCCACGGTGAC
CTGAAGCCCGCGAACTTCGTTTTTGTGCGAGGACGGCTGAAGTTGATCGA
TTTCGGGATTGCCAAGGCGATAGGAAATGACACCACCAACATCATGCGAG
AGTCCCAGGTAGGTACTGTCAATTATATGTCACCAGAAGCCATCCTTGAT
ACTGGGAACGGTCGCGAGCAGCCCGGCGCGGGGGGCCGCCGGGCGCCTTG
CATGAAGATAGGCCGGGCGAGTGACGTCTGGTCCTTGGGCTGCATTTTGT
ACCAGCTCGTGTACGGCAAGACTCCGTTCGCAGACCTCAATTTGATCCAG
AAACTGCACTGCATCGTAGACGAGCGCTATCAAATTGCTTTTCCCGACGA
TGAATTGCACTTCTTAGATCCCGATGTGCGTGACACCATCCAACAGTGCC
TTCGGAGAGACCCCACGGCGCGCCCCCCGATAGCCGGTGGAACTTCCAGC
CTTTTGCAGCACCCCTTTCTCCAGTCTACGGGCAAAGGGTCTGACTCCCA
TATTTGTCAGACGATTCAAGCGACGCTTGAGGTCTTGGATCAGTACCCTG
ATGTTCTGActctggagaaggggaagcgtGTCGGAAGCATCTTCGAGCGG
TTGAATGGACGGAAGGAACCGCTTGGCAACGCTAAAAGGTAGCGCAGATA
GCAAGTAATGTAAATTTAATTCACACACCTCGATGAGCAGTAACCCTTTC
CTTTGCAATGGATCGCTGTTGAGAGTTCATGTTTTTTACTTTTTTAACAT
CTGTACTTCGATCTTAACCTCCTATTAAAGA

Coding sequence (CDS) from alignment at KK037250.1:294512..298042+

>rna8846 ID=rna8846|Name=rna8846|organism=Nannochloropsis gaditana|type=CDS|length=3339bp|location=Sequence derived from alignment at KK037250.1:294512..298042+ (Nannochloropsis gaditana)
ATGGCCACGGCCAGTGCTCGTGTCGCGGTCAGTATAGCCGCTGCGGATAA
GGAAAATGTGGCGCCAGCAATCCCGatgggcaaaggaggggtggCACGAC
GGAAAGGTCTGTCCACGATCACGCTGGGTGCGGGGCACTTGGCGAATGTC
CTtcgagaaggtgggggtAATGCAGACGCTGATGCGAGCAGGAAAACCCC
CTTAACATCGTGCGAGGAGCATGCTTTACCACGACTTCTACTCTTCGCGG
AGAGGGCAGACGAGGTGTTCATGCTGGGGGAGGGCTTGCCAGAAAGCGAG
GCCAGACGAGAGCTAGCTCAAGCAGTGATGGAAGATAGGGGCAATCCTTC
GGTGTGGTGGCACCTCTTGCAGCACGTGCATCGAGTCTTCGGTGAATCCG
AGTCCTGTGCACCTGCCGAGGCGGCCCACATCCGTAAGTTCTACCAGAAA
GCCACCCGCATCATCCCCGACGGCCCTTCCCGGGACAAAGAGGATCCTGC
ATTGGTCAACATATGGTTAGGATTTGCCGCGGCCGAAAATTGCGTGAGCG
AATCGGACGCACGAGAGGCCTATGAACACATGTATCGCTGCGGGATAGGC
TCTCGGTCGTCTAGCTTCTATCTGAAGTTCGCTGCCTTCGAggaaaagca
agggaggatTACCGAGGCACTTGCTCTTTTAGAGTCGGGCATCTCGCGGG
GGGCGGCGCCGTTGGAGACTCTTGTCGCCGAACTTGAGAGGTTACGAAGC
AGGAAACCTTTAGTAGCATCCAGAATTGCAGCTCCTTTGCCGAGTACCTT
CTCAACccgctctccgccctccgTTGCGCCTTCCCCCGACTTAACAATTG
AAGCCAGTGGTGTTGCTGACCGAGATTCAGGAACGCAGCAACCTCACCCA
AGTCAGCCGCCAAGagtggaggagcgggagcatGACCGGGCGCGTCCCGG
GCCGCCCTCGACGCCTGCTGCGGCAGTGACCGAGACGGCAAAGGCCCCGG
TGCCGCCCGCTGTCACACCTCAGGCACAACCTACAGGCACAATCGACGCC
AGCATGCAGCAACAGGCCGGGATACTCTCTCCAACTCCCGCCTCTGCCAG
GGCCGACCTGCTTCATTCGTCGCACAAGGACGACTCGACAAACCAGGGGT
CCACGCGGACACAGCCTCGAACAGTCAGCAAATCGAAAAGACTCCTGCCC
ACCGGAAGACTCTTGGGGCTGGGAAAGGCGGAACGCGTGCGCTTCGACAC
CCCCGGCAAAGCGGACGGGGAAGCAGAGAAGGTgacggggggtgggggca
gTAAGTGCGACGCCGActtctgtcctccccctcccgagaAATGCTTGGCG
ACCCCCTCCACCGGAAGCGCCGAGGCTCATGCTCCAGTGCCTGTAGCTAC
GACCCCAGCCAAGCCCGACACGCATCGCCTGCAGGATCTGCGCCTcgcgt
ccccctccttgacggCGCTGCACCCGATACTGGAGGGCGATCAgagcgcg
gggaaggaggaaaggggctcCGAGGACACGGCTCATGGTCAGCAGGCATC
TGTGCAGCAGACTCCTGGGGAGACTGCCTTCCGTCCGCTCGCGGCAAAGA
CACCCCATCTCAACAGTGCCAGGGctaccctcccacccccctccctcgcc
tgtctcccctcccctgccgccgcctctaGCCGTTCCTCGGATTCGCCAAA
AGAGGATCTTCCGGGATCGGGCAGAAAGCAGAAATTTGACACCGACGAGG
CGCACACAAGAGATCGGGGTCGAGTGTCCGCGGTCACGCACGAGTCCGTG
CAGATAGAGGACAAGGGATCCCTTGACTATGACGGAAAAGATCAGAAGCG
GGCGataaagcagcagcaagaagaaCTTCAAACACCACTTGACCACTATT
CTCGGCGACACGAGCAGCAGCCCCGGCGGCATACGGAGGAAGGCATCAGA
GAGGACAAAATTGCGGGAACGCCCGCGTCCCGCAACGCCGGTGCCCCCCT
CCAGCTTCAGGATCAGCCACACCACTATGTCAGCCAGCACCCGCAAAGCC
ATCGAccttccccatctccttTTTCCAGACCAGAAGCTCAGCCACCACAT
CATCAtgcaccaccgccttcacAACACCAACAAGAACACCAagagcagcg
gcagcagcagcagcgtgaAACACGTTCGAAGCATCCCGAGCACCTACAGC
AACCAGCATCCCAAACTTTCTCTTTTGACATGCTACTCTCCTCCCGAAAT
TTCATGACCCTGAACAACACCCAGTACCTACGACTCGACGTCcttggccg
ggggggaagcagcaaAGTGTTCCGCGTGCTGTCGGAATCCGGACGAATCT
ATGCCCTGAAGCGCGTACGCGTGCCTCCGAAAGACAGGAAGGCCCTGGAG
TCCTTCGCCAACGAGATCACCCTACTTGCACGTTTGCGAGGCCACCCTTG
CATCATTCAATTGATAGATTCAACTGTCGATAAGGCGACGGGATTGGTTT
TGATGCTGATGGAGTTGGGGGAGATTGATTTGAGCAAGCTCCTCGCTgag
caggcggcggcagaggcgCTCGACGCCGGCAACGACTccaggggaaaggg
gcggaGACCGCTGAGCTTGAACTTTGTCCGCTTTGTGTGGGAGCAGATGC
TCCGGGCCGTGCATTGCGTCCACGAGGAGCGTATTGTCCACGGTGACCTG
AAGCCCGCGAACTTCGTTTTTGTGCGAGGACGGCTGAAGTTGATCGATTT
CGGGATTGCCAAGGCGATAGGAAATGACACCACCAACATCATGCGAGAGT
CCCAGGTAGGTACTGTCAATTATATGTCACCAGAAGCCATCCTTGATACT
GGGAACGGTCGCGAGCAGCCCGGCGCGGGGGGCCGCCGGGCGCCTTGCAT
GAAGATAGGCCGGGCGAGTGACGTCTGGTCCTTGGGCTGCATTTTGTACC
AGCTCGTGTACGGCAAGACTCCGTTCGCAGACCTCAATTTGATCCAGAAA
CTGCACTGCATCGTAGACGAGCGCTATCAAATTGCTTTTCCCGACGATGA
ATTGCACTTCTTAGATCCCGATGTGCGTGACACCATCCAACAGTGCCTTC
GGAGAGACCCCACGGCGCGCCCCCCGATAGCCGGTGGAACTTCCAGCCTT
TTGCAGCACCCCTTTCTCCAGTCTACGGGCAAAGGGTCTGACTCCCATAT
TTGTCAGACGATTCAAGCGACGCTTGAGGTCTTGGATCAGTACCCTGATG
TTCTGActctggagaaggggaagcgtGTCGGAAGCATCTTCGAGCGGTTG
AATGGACGGAAGGAACCGCTTGGCAACGCTAAAAGGTAG

Synonyms

Publications