rna8843, rna8843 (mRNA) Nannochloropsis gaditana

Overview
Namerna8843
Unique Namerna8843
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1473
Alignment locationKK037250.1:286055..287639 +

Link to JBrowse

Properties
Property NameValue
Productkelch-like protein diablo
Orig transcript idgnl|cribi|Naga_100169g13.561.mrna
Orig protein idgnl|cribi|Naga_100169g13.561
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:286055..287639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100169g13gene8573Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8843rna8843-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21870.1cds8813Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8843 ID=rna8843|Name=rna8843|organism=Nannochloropsis gaditana|type=mRNA|length=1473bp
CCCCGGTCATAGCACGCAATTTCTTATCCATCCTGAACTCCATACTACAC
AAACTTCGCACAGGTTCTTAGGTTGGAATGGTAGCAAACGATGAAACGGA
TGTTTATTCTATTTTCTCGCCTTTGGCCTTGTCTGCTGGGACTTCTCTTG
TGAACATGACACGTTCTCTGGAAGCCCTCCTGTCAAGCTACACCCCACAT
AGCGGCTCTTTGTCAGACAATGATCACTGGAGCGGGGATGATGAAGTGGA
GGATAAAATTAGGTGTTTCAATCAATGTGTTGGCCGTTTAGAAAGGTGCA
AACGAAAAAGACCGCATGACTCACCCCTCGAGGGCGATCAAGAACAAGCC
CTGCCCCCAACAAGAAGATCTTCCCGACAGGCAAGTCGCTCTTCTGATGC
GAGAAAGCCTTGGCACGCGTTGATGAAACGTAGCAGGCGGTCTACTACAG
CTATCAGCAAGCATGACGAGGACAAGAGGGTTGTATGCTCCGGGAGCCTC
AAACGTCACCGCACGACAGGTGAAGTAGAAGTGCAAGTTTTCAGACGCGT
GCTATCCCGCGACACCGTAGACTTGCTGTTAAAGGGTGAACTCTTCAGTT
CTGCCGCACCGATATCGAGCAGGAGGGCCAGCCACTGTGCAAGAAACCCA
TGGCCGGGTGTCAACAACCTCATCAAGACTCTTCTCGAGAGCACACACGC
CACGCAGGTCAAACATCCCTACATTGCGGAGATCTCATCAAGGTGCGACA
GCACGGGCCCTCCTCAACGCCTCGACCTTCGCCTCAGTTCGTCCGGCGTC
CGCTCCCTCCTGAGCGACGAGGCCATTCAAGCGGTAGAGGCCATCGTCTT
CGGCCTAAGGTCAGCTCTTAAGTTTACAGGCAAGGTCCATTGGGACTCGC
ATATCGTCGTTGTCCTTCCCGGCGCGCCGGAGCAGCGCTATCACGTGGAC
TCGTCCCGCTCGTGGTTCTATTTCACCCTTATTTTCCCACTTTCGAAAGA
CCCTCCCAGGGCAGGACGGACGGAGTTCTGGAATAAAGAGAGGGACCAAC
CGTCCATGCCAGTGGAGCGGGGAGACGTGCTCGTGTTCGACGGCAAGCGC
AAGCATCGGGGATCGGCCAACGCCACGCATCGACATGTCCGGGTCTTCCT
TTACATTGCCGTCTATTCTGGCACTGACTGGAATTGATGGCAAGAAGAGG
GTGTAAGAACGGATGAAAGCCGGAAGGGGCATCAAATGTAACGGTACATG
CTTGCAAGATGGAAGTGGGCCCTAAGATAACTAAACCAACAGCAAACGTC
TGGGTCAGCTTGGTATTGCAGGTTGTACGTGTTTTGATATTATTAGTAAT
GTGGATCGATATAGCCTCCGACAACCCCACTGGGTCCCAATGATCGCATT
TCTACCATAGTAGGGCTTTCGGTTATTGCCTCCCTTTTACGTCCAGCCCA
CTTTCGTTGCATTAATTTACTGC
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protein sequence of rna8843

>rna8843-protein ID=rna8843-protein|Name=rna8843|organism=Nannochloropsis gaditana|type=polypeptide|length=483bp
MPGKKPPSRPKIGKRGYAGPTNVAAPSTDSVPSIYDTLPTDLLYFVLRYF
DASMLARWEQTCLLARNSLEGQKGVALWQMATEYQFQWFITSKPSYISQK
RFLLQLRKSCWPIEHKNDLDRPGRFYVLGGSCNRPAPMDGCECFMDSGGA
KLLPGRYPAPFHKEAVPALQMERSAPGVARDQEDGLWVVGGWSGSEALKS
VERLGVDPRTAQEGGMREHRVAKEDLVTGGSSWSGMPRRERMWTSLQPLE
TARCFLASVTDLQGRLYALGGGESIWQGARVLKSTEIMEEPLARLTMPWR
PGPCMVKARCGLAAAASITGDIYAAGGYGGGTTYLSSVEVLRAGDSEGAT
REWLVDVVRPMHVARTGFGLAFGPDGCLFAVGGSPDGLHSHRRGEKYDVR
EGRWRWLPLMITPRGYCSAAFGPSGLLYVVGGQAGVTNDDAITSVVEVYD
PRADKWRQFKSFGGENDSGVDRVDLGVVWALVP
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mRNA from alignment at KK037250.1:286055..287639+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8843 ID=rna8843|Name=rna8843|organism=Nannochloropsis gaditana|type=mRNA|length=1585bp|location=Sequence derived from alignment at KK037250.1:286055..287639+ (Nannochloropsis gaditana)
taacctcccgcctcgctTGTCTTAGAATAGGTAGCTCGCACTTAGGCCAG
GATTGCAGTTTATTGCGACAGGAAAAATTGGAGCAAAATATTCATTTTCT
TACTTACAGGCACTATGCCTGGGAAGAAGCCACCATCCCGTCCCAAAATT
GGAAAGAGAGGCTATGCAGGCCCTACAAATGTCGCAGCGCCCAGCACAGA
CTCAGTCCCATCCATCTACGATACTCTTCCAACTGACTTGCTGTATTTCG
TTCTTCGCTATTTTGACGCCTCTATGCTCGCACGGTGGGAGCAGACATGC
CTGTTGGCCCGAAATTCGCTCgagggacagaaaggagTTGCCCTGTGGCA
GATGGCGACAGAATACCAGTTTCAGTGGTTTATCACATCAAAGCCTTCCT
ACATCTCACAAAAGAGATTTTTGTTGCAACTACGGAAAAGCTGCTGGCCG
ATCGAGCATAAAAATGACTTAGATCGCCCGGGAAGATTTTATGTACTGGG
GGGCTCTTGCAACAGGCCCGCGCCAATGGACGGATGCGAGTGCTTCATGG
ACTCCGGGGGCGCGAAGCTTCTGCCAGGGCGGTACCCTGCTCCTTTCCAC
AAAGAGGCTGTCCCAGCCTTACAAATGGAACGCTCTGCACCTGGAGTGGC
TCGGGATCAGGAGGACGGTCTgtgggtggtgggggggtGGTCGGGATCCG
AGGCTTTGAAATCCGTGGAGAGGTTAGGGGTAGACCCGAGGACTGCccag
gagggtgggatgagAGAGCATCGGGTAGCAAAGGAGGACCTGGTAACAGG
AGGCTCGAGCTGGTCTGGCATGCCTCGACGCGAAAGGATGTGGACGTCCC
TGCAGCCGCTCGAGACCGCCCGTTGCTTCCTCGCCTCTGTGACCGATTTG
CAAGGCCGCTTGTACGctctgggggggggagaaagcatATGGCAAGGCGC
TAGGGTACTCAAAAGTACCGAAATCATGGAAGAGCCCCTTGCCCGGTTAA
CTATGCCCTGGCGCCCCGGCCCTTGCATGGTAAAAGCCCGCTGCGGGCTT
GCCGCAGCTGCGAGCATCACAGGCGACATCTATGCCGCTGGAGGGTATGG
GGGGGGTACGACATATCTGTCTTCCGTTGAGGTGTTACGAGCGGGCGATT
CAGAGGGAGCCACGAGGGAATGGTTGGTCGATGTGGTACGGCCCATGCAT
GTAGCCCGAACCGGCTTTGGGCTGGCCTTTGGGCCTGATGGCTGCCTTTT
TGCCGTGGGAGGGTCGCCCGACGGCTTGCACAGCCAccgaaggggagaaa
agtaTGACGTTCGGGAAGGTCGATGGAGGTGGCTCCCTCTCATGATAACA
CCTCGGGGTTACTGCTCCGCGGCTTTTGGGCCGTCGGGCTTATTGTACGT
CGTGGGCGGACAGGCAGGCGTGACTAACGACGACGCCATAACCAGCGTCG
TCGAGGTGTATGATCCTCGGGCAGACAAATGGCGACAATTCAAGAGTTTT
GGCGGTGAAAATGATTCAGGGGTAGACCGTGTAGACCTAGGAGTTGTCTG
GGCCTTGGTCCCTTAAAGAAACAAGCTGGTTTTTT
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Coding sequence (CDS) from alignment at KK037250.1:286055..287639+

>rna8843 ID=rna8843|Name=rna8843|organism=Nannochloropsis gaditana|type=CDS|length=1452bp|location=Sequence derived from alignment at KK037250.1:286055..287639+ (Nannochloropsis gaditana)
ATGCCTGGGAAGAAGCCACCATCCCGTCCCAAAATTGGAAAGAGAGGCTA
TGCAGGCCCTACAAATGTCGCAGCGCCCAGCACAGACTCAGTCCCATCCA
TCTACGATACTCTTCCAACTGACTTGCTGTATTTCGTTCTTCGCTATTTT
GACGCCTCTATGCTCGCACGGTGGGAGCAGACATGCCTGTTGGCCCGAAA
TTCGCTCgagggacagaaaggagTTGCCCTGTGGCAGATGGCGACAGAAT
ACCAGTTTCAGTGGTTTATCACATCAAAGCCTTCCTACATCTCACAAAAG
AGATTTTTGTTGCAACTACGGAAAAGCTGCTGGCCGATCGAGCATAAAAA
TGACTTAGATCGCCCGGGAAGATTTTATGTACTGGGGGGCTCTTGCAACA
GGCCCGCGCCAATGGACGGATGCGAGTGCTTCATGGACTCCGGGGGCGCG
AAGCTTCTGCCAGGGCGGTACCCTGCTCCTTTCCACAAAGAGGCTGTCCC
AGCCTTACAAATGGAACGCTCTGCACCTGGAGTGGCTCGGGATCAGGAGG
ACGGTCTgtgggtggtgggggggtGGTCGGGATCCGAGGCTTTGAAATCC
GTGGAGAGGTTAGGGGTAGACCCGAGGACTGCccaggagggtgggatgag
AGAGCATCGGGTAGCAAAGGAGGACCTGGTAACAGGAGGCTCGAGCTGGT
CTGGCATGCCTCGACGCGAAAGGATGTGGACGTCCCTGCAGCCGCTCGAG
ACCGCCCGTTGCTTCCTCGCCTCTGTGACCGATTTGCAAGGCCGCTTGTA
CGctctgggggggggagaaagcatATGGCAAGGCGCTAGGGTACTCAAAA
GTACCGAAATCATGGAAGAGCCCCTTGCCCGGTTAACTATGCCCTGGCGC
CCCGGCCCTTGCATGGTAAAAGCCCGCTGCGGGCTTGCCGCAGCTGCGAG
CATCACAGGCGACATCTATGCCGCTGGAGGGTATGGGGGGGGTACGACAT
ATCTGTCTTCCGTTGAGGTGTTACGAGCGGGCGATTCAGAGGGAGCCACG
AGGGAATGGTTGGTCGATGTGGTACGGCCCATGCATGTAGCCCGAACCGG
CTTTGGGCTGGCCTTTGGGCCTGATGGCTGCCTTTTTGCCGTGGGAGGGT
CGCCCGACGGCTTGCACAGCCAccgaaggggagaaaagtaTGACGTTCGG
GAAGGTCGATGGAGGTGGCTCCCTCTCATGATAACACCTCGGGGTTACTG
CTCCGCGGCTTTTGGGCCGTCGGGCTTATTGTACGTCGTGGGCGGACAGG
CAGGCGTGACTAACGACGACGCCATAACCAGCGTCGTCGAGGTGTATGAT
CCTCGGGCAGACAAATGGCGACAATTCAAGAGTTTTGGCGGTGAAAATGA
TTCAGGGGTAGACCGTGTAGACCTAGGAGTTGTCTGGGCCTTGGTCCCTT
AA
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Synonyms
Publications