rna8840, rna8840 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8840
Unique Name	rna8840
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1672
Alignment location	KK037250.1:280199..282627 +

Link to JBrowse

Properties


Property Name	Value
Product	gtp-binding protein obg
Orig transcript id	gnl\|cribi\|Naga_100169g10.554.mrna
Orig protein id	gnl\|cribi\|Naga_100169g10.554
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:280199..282627 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100169g10	gene8570	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8840	rna8840-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21863.1	cds8810	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:280199..282627+
coding sequence from alignment at KK037250.1:280199..282627+

mRNA sequence

>rna8840 ID=rna8840|Name=rna8840|organism=Nannochloropsis gaditana|type=mRNA|length=1672bp
CTTTACAGGATAGTGCGTCATGTGGCGACAGATACTCTGGATGATGATAG
GAGTATCGACGGTAGCCAACAACGGAGTATGCTCGGCTTTCGGACTACAG
ACCACCTTCCTCGTCCCGGCTCCGGCTTCTCGCGCGTCCTCAACCCCCCA
GCATGCCACCCGCTCTCCCACCGAAGAGGAGGCAAGATCGGACCCTTTGG
AGTGTTGGAACTTGAATGTGGTGCCCGATAAGAAATTGTTGGCGGCAGCT
CGGGCGGAGGCTTTGAAGAAAGACGCTGACTGGTATCAGGCAGTGATCGG
CGGGAATGAAGATCGTGAGAAGGATCATTCATTGAGGACCGTTAGACCGG
CTACTGACGAGATCGTTGTGGAAGAATCGACTGGCAATGATACGCTTGAG
GTTCCACAGGCTCTGAAGCCGTTGGTAGATCTGGGGTATTCCCAAGAAGA
AGCGACGGAGCTGCCGGAGGACATCGCGAGCATTATCGTAGAGAGCGGCA
TTCGGCGGCCCGAGGGTAAATTGCCCAAGGAATGGCTGACTTCGGACACG
GATATTGAGCCACACAAAGACGCTGCCGATAGAGAGGAGCACGACACGTG
GGCGGAAGAGGCATTGGAAGAAGAGGAAACTCAGAGGCGGGAGAGGGATG
ACGAAGAAAGCTCAGGCTGGGCGGGAGCCCCTGGAAAGCGTCCGGGCAAA
GCAACGAAGGAAGTGCGGTCTGTGAGGAGCGCTGAGTCGAGGAACGTGCC
CACAAGTGCATCCTTCATTGCGGGCGGGGGCGTTCAGGGACGGCGGAGGG
AGGGGCAATACAAGAAGAGGACACGGGAGAGCGCAGGGGGTTCGGAGTCA
GTGGCCGGGAGGGAGAATGTGGGTCATGAGTATCGCGTGGGATTTGGGAG
AAGGAGCCAGCGGGAGGAGCGCGATGACGACAGGGAGTTTGAGGACTTCG
ACCCCACCTTCGCCGAGCAAGAACCAGGCCTGCTGCCCCTCTTGCTGGAC
CTTGTGGCGGAGCGGGTGCGGGGGAGCCGCCTGCTCCGGCCCCTTTTGAG
GGAGTCCAAGTTCAAGTACCTGCTCAGCCAGGAGGCGGACCTGAGGCTGA
TGGTCACGGGGCCCTGGGCCGCAGAGCTTCTACAGGACGAGATCCGGTGG
CGCCTGGGGCTCTTCCGGGATTATCTTAAGGTGGAGGAGAAGGGGGGGCG
GGGGGCGGGGAGCCGAGGGGGGAGGACGGGAAGGGGATGGGAGGAAGAGG
AGGAGGAGGTAAAAGAGGAGGACTGGCTTTCGGAGGATGAGGATGAGGAC
TATGCATATGATCGCGCTCGCCAAACCTGGAGACGCACAGGCAGGGGAGC
ATCGAGGGGGGGGGGCGCGCGGATCCGGCGACGACTCTCTTCCCTCTTTA
CGATACTCGGAGGAGACGCGGCCAGGGGGATGGAGATGGTCAGGGGAGGA
CAATGAGGACGGGGTGTTGGAGGCGAATTGGCGCGCGCTGGATGCGGAGG
AAGAGAGGGAGGAGAAGGCGGAGGGCGTAAACCGTTACACCGGCTCCTCC
GTGTCCCCTCCCCCTTTCCCCCCCTCCTCCTCCCCGTCACTAAATCGGCA
ACGCCGGCGGCAACGGCGGTCGGAGGTTCGTGCGGGCGTGGGGGTGGATC
GCAGATTTATGGGCCAGCAGGA

protein sequence of rna8840

>rna8840-protein ID=rna8840-protein|Name=rna8840|organism=Nannochloropsis gaditana|type=polypeptide|length=770bp
MQMNGKDDKMVIKVLWILSMPRPGRRCLSSIALSFKGVEARYDRRSAIAS
CVPAGKSNIFGCGRLTGDMEQMTRQYATVKNNSGKSGRRKTRPLEKLAPS
GNKKPAGQDMLVYEEEDTEDWSSFLEEYDALEAEDGMRVASDASASQVSE
DAKIVEEYRLEEDADGNLQVMPTKREGLKSKIKSAHNLLQKARQAGAMTE
DDWFEFLRRTGMDRSEENDFQSAFFEDVGEGEPSIKHPPPLRKGRHMRKA
PPKFVDRIGVAVTGGKGGKGCISFEKMANARGGAVKRPSGGHGGQGGDVI
FVADPRVQSLGMDRHHFHGKAGGSGDSNKKHGARGAHAVVRVPCGTVVKE
VLRSGRGGGYERVQVCDLDQPLSYYRAATGGRPGLGNSVQAGRARNSASA
SGNFRSPGHQGEERFYELELKTIADVGLVGYPNAGKSTLLGGLSRARPAA
AAYAFTTLHPTVGRVEYTDAASVTVADLPGLIEGAHANKGLGHEFLRHIE
RTKVLVYVLDGVGREGGAGVDDGSVVEEAPVTVFRKLKKELELYCPGLSR
RPSLVWLNKADLNAEWVSEAKAAVMADMSGDDATADRPQAWGESTMGQRG
RVPNVLSGSARTGEGIGELAHELRRVVDRVAQEDEKAQGYGGGGGHGGGE
GGKLWARETGGSDHALPHRQGGIEGVGGRNTTKSEGSFVTADVDSAADDK
TISLAEAYAKALELTQRFNVEWMNAVQCANQNIHRAQCYSAALTVTYRQD
YWLAHGMRMMKAGEQTRSES

mRNA from alignment at KK037250.1:280199..282627+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8840 ID=rna8840|Name=rna8840|organism=Nannochloropsis gaditana|type=mRNA|length=2429bp|location=Sequence derived from alignment at KK037250.1:280199..282627+ (Nannochloropsis gaditana)
ATGCAGATGAATGGAAAAGGTCGAGGTGAAGTCTTGGTGATAGTAGGGGG
GGGTATCGGGCGATGTGGAGACCGCTGCTTGCGGATATTATTTTCCTTCT
AatctccttttttcccacgCCAAACACATCGGTAGATGACAAAATGGTAA
TAAAGGTACTTTGGATTCTCTCTATGCCGCGCCCCGGTCGGCGTTGTCTT
TCCAGCATTGCGTTATCTTTCAAGGGAGTTGAAGCACGGTATGACAGGAG
GTCTGCCATCGCGTCCTGTGTACCAGCCGGGAAATCGAACATTTTCGGTT
GTGGAAGGTTGACAGGAGATATGGAACAGATGACAAGACAATATGCCACA
GTAAAGAATAACTCTGGTAAGTCAGGTCGCCGCAAGACGCGACCGCTGGA
AAAGCTAGCGCCCTCAGGGAACAAAAAGCCAGCAGGCCAAGACATGCTCG
TttatgaagaagaagacaccgAGGACTGGAGCTCGTTTTTGGAAGAGTAT
GATGCGTTGGAAGCAGAAGATGGCATGAGGGTCGCGTCGGATGCCTCTGC
TTCTCAAGTCTCGGAGGACGCTAAAATAGTGGAGGAGTATAGgcttgaag
aggatgcggacGGAAACCTGCAAGTGATGCCcacaaaaagagaagggctT
AAATCGAAGATAAAATCAGCACACAATCTGCTGCAAAAGGCTCGTCAAGC
AGGTGCCATGACGGAAGATGATTGGTTCGAGTTTTTGCGGCGCACCGGCA
TGGACCGATCAGAGGAAAACGATTTTCAGAGTGCCTTTTTCGAGGACgtt
ggcgagggagaacCTTCTATCAagcatccccctcctttgcgaAAAGGCAG
ACACATGCGCAAGGCCCCGCCAAAATTTGTGGACCGGATAGGCGTGGCCG
TGACCGGAGGtaagggcggaaagggatgCATTAGTTTCGAGAAGATGGCA
AACgccagaggaggggcggtcAAACGTCCCTCGGGGGGCCACGGAGGCCA
GGGTGGGGACGTGATTTTTGTCGCGGATCCGCGCGTGCAGAGCCTGGGGA
TGGACCGGCACCATTTCCATGGCAAGGCAGGGGGCTCTGGGGACTCGAAC
AAGAAACACGGGGCCCGCGGTGCGCACGCGGTCGTTCGCGTCCCTTGCGG
CACGGTGGTCAAGGAGGTCTTGCGGagcggcaggggcgggggataTGAGC
GGGTCCAAGTCTGCGACCTAGATCAGCCTTTAAGCTACTACCGGGCTGCC
ACAGGGGGACGCCCGGGACTGGGCAACTCCGTGCAGGCGGGGCGAGCCCG
TaactccgcctctgcctccggcAATTTTCGGTCCCCTGGCCATCAGGGTG
AGGAGCGGTTCTATGAGTTGGAGCTTAAAACGATCGCGGATGTGGGCCTG
GTCGGCTACCCAAATGCAGGAAAGTCCACCCTCTTGGGTGGGCTCTCCCG
GGCCCGGCCGGCGGCAGCCGCTTATGCTTTTAccaccctccaccccacTG
TGGGCCGAGTCGAGTACACGGATGCGGCCAGCGTGACGGTCGCGGACTTG
CCCGGTCTTATCGAAGGGGCTCACGCCAACAAGGGCTTGGGTCACGAGTT
TCTCAGGCACATCGAACGGACCAAGGTACTGGTCTACGTGCTcgacgggg
tggggagagagggtggggcgggcgtggacgacggcagtgtcgtggaggag
gcaccgGTGACTGTGTTTCGGAAGTTAAAGAAAGAGCTGGAGCTGTACTG
CCCTGGCTTGTCGCGCCGCCCATCGTTAGTGTGGCTAAACAAAGCCGACT
TGAACGCGGAGTGGGTCAgcgaggccaaggcggctGTGATGGCCGACATG
AGCGGAGACGATGCAACAGCTGACCGCCCACAGGCATGGGGGGAATCGAC
GATGGGCCAGCGGGGGCGGGTCCCGAATGTTCTTTCGGGCAGTGCACGca
cgggggaagggatagGTGAGCTTGCGCACGAATTACGACGGGTTGTGGAT
AGGGTGGctcaggaggacgagaaagcaCAGGGttacggcggaggaggagg
acatggcggtggtgagggcgggaagctGTGGGcaagggagacggggggct
CGGATCACGCGCTCCCGCACCGCCAGGGTGGGATTGAAGGCGTGGGCGGT
AGGAATACCACGAAAAGTGAAGGTTCATTTGTAACAGCTGATGTTGATTC
GGCGGCGGATGATAAGACCATAAGCCTTGCTGAGGCATACGCAAAGGCCT
TGGAGTTGACTCAGAGATTCAATGTTGAGTGGATGAATGCAGTGCAATGT
GCGAATCAGAATATACACCGTGCGCAATGCTATTCTGCGGCTTTGACAGT
AACTTATCGGCAGGACTACTGGCTCGCACACGGGATGAGAATGATGAAAG
CAGGAGAGCAAACGCGGAGCGAGAGTTGA

Coding sequence (CDS) from alignment at KK037250.1:280199..282627+

>rna8840 ID=rna8840|Name=rna8840|organism=Nannochloropsis gaditana|type=CDS|length=4626bp|location=Sequence derived from alignment at KK037250.1:280199..282627+ (Nannochloropsis gaditana)
ATGCAGATGAATGGAAAAGATGACAAAATGGTAATAAAGGTACTTTGGAT
TCTCTCTATGCCGCGCCCCGGTCGGCGTTGTCTTTCCAGCATTGCGTTAT
CTTTCAAGGGAGTTGAAGCACGGTATGACAGGAGGTCTGCCATCGCGTCC
TGTGTACCAGCCGGGAAATCGAACATTTTCGGTTGTGGAAGGTTGACAGG
AGATATGGAACAGATGACAAGACAATATGCCACAGTAAAGAATAACTCTG
GTAAGTCAGGTCGCCGCAAGACGCGACCGCTGGAAAAGCTAGCGCCCTCA
GGGAACAAAAAGCCAGCAGGCCAAGACATGCTCGTttatgaagaagaaga
caccgAGGACTGGAGCTCGTTTTTGGAAGAGTATGATGCGTTGGAAGCAG
AAGATGGCATGAGGGTCGCGTCGGATGCCTCTGCTTCTCAAGTCTCGGAG
GACGCTAAAATAGTGGAGGAGTATAGgcttgaagaggatgcggacGGAAA
CCTGCAAGTGATGCCcacaaaaagagaagggctTAAATCGAAGATAAAAT
CAGCACACAATCTGCTGCAAAAGGCTCGTCAAGCAGGTGCCATGACGGAA
GATGATTGGTTCGAGTTTTTGCGGCGCACCGGCATGGACCGATCAGAGGA
AAACGATTTTCAGAGTGCCTTTTTCGAGGACgttggcgagggagaacCTT
CTATCAagcatccccctcctttgcgaAAAGGCAGACACATGCGCAAGGCC
CCGCCAAAATTTGTGGACCGGATAGGCGTGGCCGTGACCGGAGGtaaggg
cggaaagggatgCATTAGTTTCGAGAAGATGGCAAACgccagaggagggg
cggtcAAACGTCCCTCGGGGGGCCACGGAGGCCAGGGTGGGGACGTGATT
TTTGTCGCGGATCCGCGCGTGCAGAGCCTGGGGATGGACCGGCACCATTT
CCATGGCAAGGCAGGGGGCTCTGGGGACTCGAACAAGAAACACGGGGCCC
GCGGTGCGCACGCGGTCGTTCGCGTCCCTTGCGGCACGGTGGTCAAGGAG
GTCTTGCGGagcggcaggggcgggggataTGAGCGGGTCCAAGTCTGCGA
CCTAGATCAGCCTTTAAGCTACTACCGGGCTGCCACAGGGGGACGCCCGG
GACTGGGCAACTCCGTGCAGGCGGGGCGAGCCCGTaactccgcctctgcc
tccggcAATTTTCGGTCCCCTGGCCATCAGGGTGAGGAGCGGTTCTATGA
GTTGGAGCTTAAAACGATCGCGGATGTGGGCCTGGTCGGCTACCCAAATG
CAGGAAAGTCCACCCTCTTGGGTGGGCTCTCCCGGGCCCGGCCGGCGGCA
GCCGCTTATGCTTTTAccaccctccaccccacTGTGGGCCGAGTCGAGTA
CACGGATGCGGCCAGCGTGACGGTCGCGGACTTGCCCGGTCTTATCGAAG
GGGCTCACGCCAACAAGGGCTTGGGTCACGAGTTTCTCAGGCACATCGAA
CGGACCAAGGTACTGGTCTACGTGCTcgacggggtggggagagagggtgg
ggcgggcgtggacgacggcagtgtcgtggaggaggcaccgGTGACTGTGT
TTCGGAAGTTAAAGAAAGAGCTGGAGCTGTACTGCCCTGGCTTGTCGCGC
CGCCCATCGTTAGTGTGGCTAAACAAAGCCGACTTGAACGCGGAGTGGGT
CAgcgaggccaaggcggctGTGATGGCCGACATGAGCGGAGACGATGCAA
CAGCTGACCGCCCACAGGCATGGGGGGAATCGACGATGGGCCAGCGGGGG
CGGGTCCCGAATGTTCTTTCGGGCAGTGCACGcacgggggaagggatagG
TGAGCTTGCGCACGAATTACGACGGGTTGTGGATAGGGTGGctcaggagg
acgagaaagcaCAGGGttacggcggaggaggaggacatggcggtggtgag
ggcgggaagctGTGGGcaagggagacggggggctCGGATCACGCGCTCCC
GCACCGCCAGGGTGGGATTGAAGGCGTGGGCGGTAGGAATACCACGAAAA
GTGAAGGTTCATTTGTAACAGCTGATGTTGATTCGGCGGCGGATGATAAG
ACCATAAGCCTTGCTGAGGCATACGCAAAGGCCTTGGAGTTGACTCAGAG
ATTCAATGTTGAGTGGATGAATGCAGTGCAATGTGCGAATCAGAATATAC
ACCGTGCGCAATGCTATTCTGCGGCTTTGACAGTAACTTATCGGCAGGAC
TACTGGCTCGCACACGGGATGAGAATGATGAAAGCAGGAGAGCAAACGCG
GAGCGAGAGTTGAATGCAGATGAATGGAAAAGATGACAAAATGGTAATAA
AGGTACTTTGGATTCTCTCTATGCCGCGCCCCGGTCGGCGTTGTCTTTCC
AGCATTGCGTTATCTTTCAAGGGAGTTGAAGCACGGTATGACAGGAGGTC
TGCCATCGCGTCCTGTGTACCAGCCGGGAAATCGAACATTTTCGGTTGTG
GAAGGTTGACAGGAGATATGGAACAGATGACAAGACAATATGCCACAGTA
AAGAATAACTCTGGTAAGTCAGGTCGCCGCAAGACGCGACCGCTGGAAAA
GCTAGCGCCCTCAGGGAACAAAAAGCCAGCAGGCCAAGACATGCTCGTtt
atgaagaagaagacaccgAGGACTGGAGCTCGTTTTTGGAAGAGTATGAT
GCGTTGGAAGCAGAAGATGGCATGAGGGTCGCGTCGGATGCCTCTGCTTC
TCAAGTCTCGGAGGACGCTAAAATAGTGGAGGAGTATAGgcttgaagagg
atgcggacGGAAACCTGCAAGTGATGCCcacaaaaagagaagggctTAAA
TCGAAGATAAAATCAGCACACAATCTGCTGCAAAAGGCTCGTCAAGCAGG
TGCCATGACGGAAGATGATTGGTTCGAGTTTTTGCGGCGCACCGGCATGG
ACCGATCAGAGGAAAACGATTTTCAGAGTGCCTTTTTCGAGGACgttggc
gagggagaacCTTCTATCAagcatccccctcctttgcgaAAAGGCAGACA
CATGCGCAAGGCCCCGCCAAAATTTGTGGACCGGATAGGCGTGGCCGTGA
CCGGAGGtaagggcggaaagggatgCATTAGTTTCGAGAAGATGGCAAAC
gccagaggaggggcggtcAAACGTCCCTCGGGGGGCCACGGAGGCCAGGG
TGGGGACGTGATTTTTGTCGCGGATCCGCGCGTGCAGAGCCTGGGGATGG
ACCGGCACCATTTCCATGGCAAGGCAGGGGGCTCTGGGGACTCGAACAAG
AAACACGGGGCCCGCGGTGCGCACGCGGTCGTTCGCGTCCCTTGCGGCAC
GGTGGTCAAGGAGGTCTTGCGGagcggcaggggcgggggataTGAGCGGG
TCCAAGTCTGCGACCTAGATCAGCCTTTAAGCTACTACCGGGCTGCCACA
GGGGGACGCCCGGGACTGGGCAACTCCGTGCAGGCGGGGCGAGCCCGTaa
ctccgcctctgcctccggcAATTTTCGGTCCCCTGGCCATCAGGGTGAGG
AGCGGTTCTATGAGTTGGAGCTTAAAACGATCGCGGATGTGGGCCTGGTC
GGCTACCCAAATGCAGGAAAGTCCACCCTCTTGGGTGGGCTCTCCCGGGC
CCGGCCGGCGGCAGCCGCTTATGCTTTTAccaccctccaccccacTGTGG
GCCGAGTCGAGTACACGGATGCGGCCAGCGTGACGGTCGCGGACTTGCCC
GGTCTTATCGAAGGGGCTCACGCCAACAAGGGCTTGGGTCACGAGTTTCT
CAGGCACATCGAACGGACCAAGGTACTGGTCTACGTGCTcgacggggtgg
ggagagagggtggggcgggcgtggacgacggcagtgtcgtggaggaggca
ccgGTGACTGTGTTTCGGAAGTTAAAGAAAGAGCTGGAGCTGTACTGCCC
TGGCTTGTCGCGCCGCCCATCGTTAGTGTGGCTAAACAAAGCCGACTTGA
ACGCGGAGTGGGTCAgcgaggccaaggcggctGTGATGGCCGACATGAGC
GGAGACGATGCAACAGCTGACCGCCCACAGGCATGGGGGGAATCGACGAT
GGGCCAGCGGGGGCGGGTCCCGAATGTTCTTTCGGGCAGTGCACGcacgg
gggaagggatagGTGAGCTTGCGCACGAATTACGACGGGTTGTGGATAGG
GTGGctcaggaggacgagaaagcaCAGGGttacggcggaggaggaggaca
tggcggtggtgagggcgggaagctGTGGGcaagggagacggggggctCGG
ATCACGCGCTCCCGCACCGCCAGGGTGGGATTGAAGGCGTGGGCGGTAGG
AATACCACGAAAAGTGAAGGTTCATTTGTAACAGCTGATGTTGATTCGGC
GGCGGATGATAAGACCATAAGCCTTGCTGAGGCATACGCAAAGGCCTTGG
AGTTGACTCAGAGATTCAATGTTGAGTGGATGAATGCAGTGCAATGTGCG
AATCAGAATATACACCGTGCGCAATGCTATTCTGCGGCTTTGACAGTAAC
TTATCGGCAGGACTACTGGCTCGCACACGGGATGAGAATGATGAAAGCAG
GAGAGCAAACGCGGAGCGAGAGTTGA

Synonyms

Publications