rna8828, rna8828 (mRNA) Nannochloropsis gaditana

Overview
Namerna8828
Unique Namerna8828
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1349
Alignment locationKK037250.1:260076..262332 -

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Properties
Property NameValue
Productsubtilisin inhibitor
Orig transcript idgnl|cribi|Naga_100159g3.6562.mrna
Orig protein idgnl|cribi|Naga_100159g3.6562
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:260076..262332 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100159g3gene8558Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8828rna8828-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21884.1cds8798Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8828 ID=rna8828|Name=rna8828|organism=Nannochloropsis gaditana|type=mRNA|length=1349bp
TTCGCGATGCCGCCTAACCTCGTTTCGTGTTCTCTCCCGCAAATTTCGAG
TTGCCATCCAATTTGCGCATGTCGCTCATCACGGCTGGGACAGCCGTTTT
TAAGAGGGGATGATGATGCCCACTAAGCTTTCATACTGCCTCATCCTGCA
CATGCTAGGTGGGGGCTTTCCTTTTGCATGCCGTACTCGCACTTCCGCCT
GTATCGGGTACTCGGACTACTCCTTCTTTGTTCTGTCGCTTGCGCTGATT
TTCCATTTCCAAGCTCGCAAGGCCCCTCTTCTTCATCTTCTGTACCAGCG
ACTTCCGGCAGTGGCGGTGTGCCCTCAGAGAGCATGACCGACAAGGACAA
CAAGGGAGGCGGCGGTGCCTTTGACCCGAAGGACCTGGCCTTCAAAATGC
CAACCCAGTCCAAGGACGAAATCTTCTCGGACAAGCCACCTAAAAGTTGG
CCTGAGCTCGTCGGAATGGACGGAGAAGATGCGAAGAAGCAAATCACTGC
TGACATGCCGGGCCTCAACGTGATTGTTCTACCCAAGAATAGTCCTTGCA
CCATGGATTACAGGCTGGAGCGAGTTCGCGTCTTCGTGGACGAAGAAGGC
AAGGTTGTAGTTGCTCCCTCGCAAGGCTAACTCTTGAAGGGACATGGAAA
ACAATCATCGGCTCGAGATTGAGACTCTGTTTATCCACCAAAAAAAAAAA
ATTATGTCGACCATTGACTTTGGAGATTTGAGGGAAAGAAATTCTCAATG
AAGTGCTTTAATGGAGAAGGGAAGGACTTTGCGGAACGAAAGGGGCATAG
ATAGACATTGATTGCGAAGTATTTGCGTGCTGCGAATGTGTAACTAGACA
TCAAAGATGGTTGGATGTCGTTGAGATAAGAGAATTCCGGGACAGTAAGG
CGCCATGAACAAATTTGTAATTTGTGGGTATTTTATTTTTATCGGCTATG
TTTTTGGTATTGTGCGCCATCGGTTAAAAGAAGATGGCTTCAAGTAAGTT
TGCAATTTGCGTGAAGGGCGTTGTTCGGGAGATTAAACCATGCAATCTTC
ACCGAATCTGTCGCGTTGCACGTGATACAGATTTTATAAGGGGATCTATG
ATCGCAACATCTCCAAACATAGCAAACGAAAGTGACGAATTGCGGGTCGT
CTTCATGGCTTAAGAGCCTCTTCACCTCCAAGAACACAGTCATCAGCTGC
TCCAGTCCTCGCCTGTAATCGTAACCCTGAAATTGACAAATATATCCCAG
ACCAAAGTGTTTATTTTTCTTTGTGTTGGGATGATTGTGTTTCACATATT
ATACACGCTATCATTCGCATCAAAACAAAATATGACCGGTACCTCCGAA
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protein sequence of rna8828

>rna8828-protein ID=rna8828-protein|Name=rna8828|organism=Nannochloropsis gaditana|type=polypeptide|length=150bp
MPYSHFRLYRVLGLLLLCSVACADFPFPSSQGPSSSSSVPATSGSGGVPS
ESMTDKDNKGGGGAFDPKDLAFKMPTQSKDEIFSDKPPKSWPELVGMDGE
DAKKQITADMPGLNVIVLPKNSPTTRDYRLNRVRVFVHEDNKVAVVPHQG
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mRNA from alignment at KK037250.1:260076..262332-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8828 ID=rna8828|Name=rna8828|organism=Nannochloropsis gaditana|type=mRNA|length=2257bp|location=Sequence derived from alignment at KK037250.1:260076..262332- (Nannochloropsis gaditana)
TTCGCGATGCCGCCTAACCTCGTTTCGTGTTCTCTCCCGCAAATTTCGAG
TTGCCATCCAATTTGCGCATGTCGCTCATCACGGCTGGGACAGCCGTTTT
TAAGAGGGGATGATGATGCCCACTAAGCTTTCATACTGCCTCATCCTGCA
CATGCTAGGTGGGGGCTTTCCTTTTGCATGCCGTACTCGCACTTCCGCCT
GTATCGGGTACTCGGACTACTCCTTCTTTGTTCTGTCGCTTGCGCTGATT
TTCCATTTCCAAGCTCGCAAGGCCCCTCTTCTTCATCTTCTGTACCAGGT
AAGCACGAATGTTTGTCACACGACACAATTGGGCCTAACGAGAGGCCGAG
CTCTGGAAGCAAGAGCCCAGGGAAGAGAGTCATTGATAATCACAATTATG
CGCCGGGCGTTATGATGCTTATCTTAGTGTGGAGGAGATGGTGTGGTCTA
TGAAGCTTTACAAAGTAACCTCATTGATAGATTGTGTACTTGGTTGTCGG
AATCCGCCAGTGTAGAAAGTTGGGGGCATATTTTTCATTCGACTCCTCAA
ACGTAGCCCCCTCTCACTGTGTGCCGCATCCCATCGCAGCGACTTCCGGC
AGTGGCGGTGTGCCCTCAGAGAGCATGACCGACAAGGACAACAAGGGAGG
CGGCGGTGCCTTTGACCCGAAGGACCTGGCCTTCAAAATGCCAACCCAGT
CCAAGGACGAAATCTTCTCGGACAAGCCACCTAAAAGTTGGCCTGAGCTC
GTCGGTAAGTCGATCCTGCTATTGCAGAGGACTTTTCGGGCTTGATGGAT
GTGGTCCAACACGTTTGTGATTGTACTCATGCTTGTTGTGCTGAAGGAGA
TTCTCACACGTGCACTGGGACATCATTTTGGTTTTCTCTTGCGAACAGGA
ATGGACGGAGAAGATGCGAAGAAGCAAATCACTGCTGACATGCCGGGCCT
CAACGTGATTGTTCTACCCAAGGTACGTGATCTCGCCTGGAAATAGGATA
AAAACTGGCGCACGAATGGATGGACGCCGAGGACTCGTGCTCCAAAAGCA
TTACTTTGGATGTCGAGGCTAAGCCAACACCTGCCGTTCACGAGTGGTTT
GATTCGTTAAGTCTCTTGAGTATGCTTGATCAGTCATACAAGATGCTTGG
GTGCAATTGTCTTAATCGTGTAGAGCTTAAAGCGGTTCGTTCGACTTGGA
AACGGTCACCCAACATAGAACTCCCCCACAACCCGAGACTACCGGCTAAA
CCGTGTTCGGGTCTTTGTTCACGAAGACAACAAGGTGGCGGTCGTTCCAC
ATCAAGGTTGATGGATGTATTCAACCGCCGTCACCATCTCATTCTTGCCT
CCTTCCACAAAAGTGGTGAGCATATTTTGTTCACGTAATATTTGTCTTGA
TGGCAACTGATGTCATCAACACATTTCACACACATCCAATGACAGAATAG
TCCTTGCACCATGGATTACAGGCTGGAGCGAGTTCGCGTCTTCGTGGACG
AAGAAGGCAAGGTTGTAGTTGCTCCCTCGCAAGGCTAACTCTTGAAGGGA
CATGGAAAACAATCATCGGCTCGAGATTGAGACTCTGTTTATCCACCAAA
AAAAAAAAATTATGTCGACCATTGACTTTGGAGATTTGAGGGAAAGAAAT
TCTCAATGAAGTGCTTTAATGGAGAAGGGAAGGACTTTGCGGAACGAAAG
GGGCATAGATAGACATTGATTGCGAAGTATTTGCGTGCTGCGAATGTGTA
ACTAGACATCAAAGATGGTTGGATGTCGTTGAGATAAGAGAATTCCGGGA
CAGTAAGGCGCCATGAACAAATTTGTAATTTGTGGGTATTTTATTTTTAT
CGGCTATGTTTTTGGTATTGTGCGCCATCGGTTAAAAGAAGATGGCTTCA
AGTAAGTTTGCAATTTGCGTGAAGGGCGTTGTTCGGGAGATTAAACCATG
CAATCTTCACCGAATCTGTCGCGTTGCACGTGATACAGATTTTATAAGGG
GATCTATGATCGCAACATCTCCAAACATAGCAAACGAAAGTGACGAATTG
CGGGTCGTCTTCATGGCTTAAGAGCCTCTTCACCTCCAAGAACACAGTCA
TCAGCTGCTCCAGTCCTCGCCTGTAATCGTAACCCTGAAATTGACAAATA
TATCCCAGACCAAAGTGTTTATTTTTCTTTGTGTTGGGATGATTGTGTTT
CACATATTATACACGCTATCATTCGCATCAAAACAAAATATGACCGGTAC
CTCCGAA
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Coding sequence (CDS) from alignment at KK037250.1:260076..262332-

>rna8828 ID=rna8828|Name=rna8828|organism=Nannochloropsis gaditana|type=CDS|length=1812bp|location=Sequence derived from alignment at KK037250.1:260076..262332- (Nannochloropsis gaditana)
AACTCCCCCACAACCCGAGACTACCGGCTAAACCGTGTTCGGGTCTTTGT
TCACGAAGACAACAAGGTGGCGGTCGTTCCACATCAAGGTTGAGAATGGA
CGGAGAAGATGCGAAGAAGCAAATCACTGCTGACATGCCGGGCCTCAACG
TGATTGTTCTACCCAAGCGACTTCCGGCAGTGGCGGTGTGCCCTCAGAGA
GCATGACCGACAAGGACAACAAGGGAGGCGGCGGTGCCTTTGACCCGAAG
GACCTGGCCTTCAAAATGCCAACCCAGTCCAAGGACGAAATCTTCTCGGA
CAAGCCACCTAAAAGTTGGCCTGAGCTCGTCGATGCCGTACTCGCACTTC
CGCCTGTATCGGGTACTCGGACTACTCCTTCTTTGTTCTGTCGCTTGCGC
TGATTTTCCATTTCCAAGCTCGCAAGGCCCCTCTTCTTCATCTTCTGTAC
CAGAACTCCCCCACAACCCGAGACTACCGGCTAAACCGTGTTCGGGTCTT
TGTTCACGAAGACAACAAGGTGGCGGTCGTTCCACATCAAGGTTGAGAAT
GGACGGAGAAGATGCGAAGAAGCAAATCACTGCTGACATGCCGGGCCTCA
ACGTGATTGTTCTACCCAAGCGACTTCCGGCAGTGGCGGTGTGCCCTCAG
AGAGCATGACCGACAAGGACAACAAGGGAGGCGGCGGTGCCTTTGACCCG
AAGGACCTGGCCTTCAAAATGCCAACCCAGTCCAAGGACGAAATCTTCTC
GGACAAGCCACCTAAAAGTTGGCCTGAGCTCGTCGATGCCGTACTCGCAC
TTCCGCCTGTATCGGGTACTCGGACTACTCCTTCTTTGTTCTGTCGCTTG
CGCTGATTTTCCATTTCCAAGCTCGCAAGGCCCCTCTTCTTCATCTTCTG
TACCAGAACTCCCCCACAACCCGAGACTACCGGCTAAACCGTGTTCGGGT
CTTTGTTCACGAAGACAACAAGGTGGCGGTCGTTCCACATCAAGGTTGAG
AATGGACGGAGAAGATGCGAAGAAGCAAATCACTGCTGACATGCCGGGCC
TCAACGTGATTGTTCTACCCAAGCGACTTCCGGCAGTGGCGGTGTGCCCT
CAGAGAGCATGACCGACAAGGACAACAAGGGAGGCGGCGGTGCCTTTGAC
CCGAAGGACCTGGCCTTCAAAATGCCAACCCAGTCCAAGGACGAAATCTT
CTCGGACAAGCCACCTAAAAGTTGGCCTGAGCTCGTCGATGCCGTACTCG
CACTTCCGCCTGTATCGGGTACTCGGACTACTCCTTCTTTGTTCTGTCGC
TTGCGCTGATTTTCCATTTCCAAGCTCGCAAGGCCCCTCTTCTTCATCTT
CTGTACCAGAACTCCCCCACAACCCGAGACTACCGGCTAAACCGTGTTCG
GGTCTTTGTTCACGAAGACAACAAGGTGGCGGTCGTTCCACATCAAGGTT
GAGAATGGACGGAGAAGATGCGAAGAAGCAAATCACTGCTGACATGCCGG
GCCTCAACGTGATTGTTCTACCCAAGCGACTTCCGGCAGTGGCGGTGTGC
CCTCAGAGAGCATGACCGACAAGGACAACAAGGGAGGCGGCGGTGCCTTT
GACCCGAAGGACCTGGCCTTCAAAATGCCAACCCAGTCCAAGGACGAAAT
CTTCTCGGACAAGCCACCTAAAAGTTGGCCTGAGCTCGTCGATGCCGTAC
TCGCACTTCCGCCTGTATCGGGTACTCGGACTACTCCTTCTTTGTTCTGT
CGCTTGCGCTGATTTTCCATTTCCAAGCTCGCAAGGCCCCTCTTCTTCAT
CTTCTGTACCAG
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Synonyms
Publications