rna8824, rna8824 (mRNA) Nannochloropsis gaditana

Overview
Namerna8824
Unique Namerna8824
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length666
Alignment locationKK037250.1:252063..253916 +

Link to JBrowse

Properties
Property NameValue
Product40s ribosomal protein s6
Orig transcript idgnl|cribi|Naga_100159g7.6556.mrna
Orig protein idgnl|cribi|Naga_100159g7.6556
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:252063..253916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100159g7gene8555Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8824rna8824-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21878.1cds8794Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8824 ID=rna8824|Name=rna8824|organism=Nannochloropsis gaditana|type=mRNA|length=666bp
AGGGCACTGAGGCACTTAAAGTGTACCGAATATAACTGACACGTCAGGAT
TCCTTGCATTTTCAATAGAGTACACGAGCCTCTGTAAACGTCTCCAACAA
GGAAGGGGAGGAAGAGAATTTCCGTCCAGAAGGAGAAAAGGGGGGCCATC
CAAAATATGCAGCAAGCCACAATTGCCCCAAAGCCACAACAACGTACACA
TGACCCTCGGCGTTCCAAGCACATATTTCCGTATCTTTCCCTTCGAGCCC
GCGATAGCGTGGAGGAGCCCTATAGGTACGACTCAATTGGTGTACTTTCC
TTGTTCCTAGCAGTACTGTGTATCCTTACGAGATTGAGGATCTGCGCCTG
GCTTTCGCTTTTCATGTTGTGCTCAGCGGCAGCAAATGTCCGCTACTCCT
CCTTTGACGGTCGTACTCTCTTCGGAGCCTGTATAGCGATGCTTTTTGCA
TTCTACACGGTATACATCAAAAGCTTCTTGGAATGATAAATGATGATTGT
ACATAGATGTAACTGCCTTCTTACCTCTCGTGGAAGACACGGCAATCGGT
GGCGATGGATGGCTTCGACCTTTGAATCGTGATGGGGCGCCTGTCTAACA
AACTGTACATAACGTGAAAATTCTGAAAAAAGAAACGCCGAGAAGAATTG
TTACACAGATCGAGAC
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protein sequence of rna8824

>rna8824-protein ID=rna8824-protein|Name=rna8824|organism=Nannochloropsis gaditana|type=polypeptide|length=242bp
MKLNIANPQTGQQHVVEIDDEKRLRAFYDRRISQEVDGEHIGDEFKGYVF
KISGGNDKQGFPMKQGVLTDQRVRLLLRKGLSCYRARRKGERKRKSVRGA
IVGPDLSVLNLVLVKRGEEDVVGLTDSAVPRRLGPKRANNIRKLFNLSKD
ADVTTYPVERKFENKKGKTVVKKPKIQRLITPLRLQHKRRRLEAKKAATT
KAKAEAAEYHRIFQQRLNERKESRRSAISKRRSSRRASAKVE
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mRNA from alignment at KK037250.1:252063..253916+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8824 ID=rna8824|Name=rna8824|organism=Nannochloropsis gaditana|type=mRNA|length=1854bp|location=Sequence derived from alignment at KK037250.1:252063..253916+ (Nannochloropsis gaditana)
TCGTGCGGACTTGGATTTTTTTACACTCTGTGTGTTCACCACATGACATC
TGTGCATTTGCGTTTATGGAGATGCTTTGCGTGGTATGTAAATGGCTGGG
CGGGGCTGTTGCCTCCCTACCCTTTGCCCTCgccgaggaagggtgggTGT
GGTGGATGGCGCAGTCACGTGCAGCCTGGAGGTGTCGCACTTCCATCGTG
ATCCCTCTACTCGAATGTTACCTATATGTGTAGTCCTATGAGGGGCCATG
GAAGGAGTGGAAGCTTAATTTGTTCGGGCATGCCACTCTGTCCCTCGTTT
ATCTCCCCAcccaccacctcccacgCAAAcgcttttcccttctcatcTCT
TATTTTAAAGGAGGCCGTAGCTCTTTACACACTGCCACCATGAAGGTAAG
AAGTTTTATAAGGCTTTGTTGTACCGCTCACATTTTAATCTCCCCGAAAT
GAAGAGGTTCTCATCGTCCCCTTCCCAACTCGCAGCTCAACATTGCCAAC
CCTCAGACGGGTCAGCAGCATGTGGTAGAAATTGACGACGAGAAGCGTCT
GCGAGCTTTCTACGACCGGCGTATTTcgcaggaggtggacggggaACACA
TTGGGGACGAGTTCAAGGGCTATGTATTCAAAATCTCTGGCGGCAACGAC
AAACAGGGGTTCCCCATGAAGCAGGGCGTGCTCACCGACCAGCGCGTCCG
TCTCCTCTTGCGCAAGGGCTTGTCCTGCTATCGAGCCCGCCGAAAGGGTG
AGCGCAAGCGCAAGTCTGTCCGCGGCGCTATCGTCGGACCTGACCTGTCG
GTGCTGAACCTAGTTTTGGtgaagcggggggaggaggatgtggtcgGCCT
CACAGACAGTGCGGTCCCTCGTCGCCTGGGCCCCAAGCGCGCGAACAACA
TTCGCAAGCTTTTCAACTTGTCCAAAGATGCAGACGTCACCACATATCCT
GTTGAGCGCAAGTTTGAGAATAAGAAGGGAAAAACTGTCGTCAAGAAACC
CAAAATCCAGCGGCTCATCACACCCCTTCGTCTCCAGGTAAGGAGACGAC
GGGTGAACTTATGTGAACGCGAATGCTGGGCTGATATATATTATAGATCG
AAGTACTGAATGAGGTCGAGAAGATGATAATACACCATGTCACAGACCTG
TTCTGAAAACGTTAGGCGGTTGGATGGGGATATTCGGTAGGAGGCTAGCG
GAAAGGGGTTGAATAAACCTTTTTACCTTCCTTTTGCCTTCCTCACCTGC
TTCCTAGTACATGTGTGACACGACATGCACCACTATCTGATCCGCCTCCT
GCAATCGCCGCTCTGATTGACGTCCTCGGCCAGGATCGTTTCTTGGCCAT
AATTCTAACTTTTTTTACCGTACACACAGCATAAGCGCCGGCGTTTGGAA
GCGAAAAAGGCAGCCACGACCAAGGCTAAAGCTGAGGCCGCAGAGTACCA
TCGCATCTTCCAGCAGCGCCTCAATGAACGGAAAGAGTCTCGCCGGTCCG
CCATCTCCAAGCGTCGTTCCTCCAGACGTGCGTCTGCCAAGGTCGAATAA
ACCCTGCACACATCGTCGGAAATTGACAAAAAATATCAGGAAGTATGATT
GTTCAGTTGAGCACTGGCGACGTTTATCGACAGGATAGAGGTTAATCGAT
TGATGTAGTGAGAGAAGCAATGCATCTTCAGCattggagaaagaaagcac
aGAAATGTGGTGCAGTGTTGGCGGTGTATTAGGCCCGCTCATACTCATGG
AAAGTGAGGACAGGCGAGGACTGAAACGCTGCTGGGATGTTCAGCAATGC
TGGGGGTGCATTTGAACGAAGTCTCAAAGAAGAGAATAACCGAACACAAC
CAGC
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Coding sequence (CDS) from alignment at KK037250.1:252063..253916+

>rna8824 ID=rna8824|Name=rna8824|organism=Nannochloropsis gaditana|type=CDS|length=2187bp|location=Sequence derived from alignment at KK037250.1:252063..253916+ (Nannochloropsis gaditana)
ATGAAGCTCAACATTGCCAACCCTCAGACGGGTCAGCAGCATGTGGTAGA
AATTGACGACGAGAAGCGTCTGCGAGCTTTCTACGACCGGCGTATTTcgc
aggaggtggacggggaACACATTGGGGACGAGTTCAAGGGCTATGTATTC
AAAATCTCTGGCGGCAACGACAAACAGGGGTTCCCCATGAAGCAGGGCGT
GCTCACCGACCAGCGCGTCCGTCTCCTCTTGCGCAAGGGCTTGTCCTGCT
ATCGAGCCCGCCGAAAGGGTGAGCGCAAGCGCAAGTCTGTCCGCGGCGCT
ATCGTCGGACCTGACCTGTCGGTGCTGAACCTAGTTTTGGtgaagcgggg
ggaggaggatgtggtcgGCCTCACAGACAGTGCGGTCCCTCGTCGCCTGG
GCCCCAAGCGCGCGAACAACATTCGCAAGCTTTTCAACTTGTCCAAAGAT
GCAGACGTCACCACATATCCTGTTGAGCGCAAGTTTGAGAATAAGAAGGG
AAAAACTGTCGTCAAGAAACCCAAAATCCAGCGGCTCATCACACCCCTTC
GTCTCCAGCATAAGCGCCGGCGTTTGGAAGCGAAAAAGGCAGCCACGACC
AAGGCTAAAGCTGAGGCCGCAGAGTACCATCGCATCTTCCAGCAGCGCCT
CAATGAACGGAAAGAGTCTCGCCGGTCCGCCATCTCCAAGCGTCGTTCCT
CCAGACGTGCGTCTGCCAAGGTCGAATAAATGAAGCTCAACATTGCCAAC
CCTCAGACGGGTCAGCAGCATGTGGTAGAAATTGACGACGAGAAGCGTCT
GCGAGCTTTCTACGACCGGCGTATTTcgcaggaggtggacggggaACACA
TTGGGGACGAGTTCAAGGGCTATGTATTCAAAATCTCTGGCGGCAACGAC
AAACAGGGGTTCCCCATGAAGCAGGGCGTGCTCACCGACCAGCGCGTCCG
TCTCCTCTTGCGCAAGGGCTTGTCCTGCTATCGAGCCCGCCGAAAGGGTG
AGCGCAAGCGCAAGTCTGTCCGCGGCGCTATCGTCGGACCTGACCTGTCG
GTGCTGAACCTAGTTTTGGtgaagcggggggaggaggatgtggtcgGCCT
CACAGACAGTGCGGTCCCTCGTCGCCTGGGCCCCAAGCGCGCGAACAACA
TTCGCAAGCTTTTCAACTTGTCCAAAGATGCAGACGTCACCACATATCCT
GTTGAGCGCAAGTTTGAGAATAAGAAGGGAAAAACTGTCGTCAAGAAACC
CAAAATCCAGCGGCTCATCACACCCCTTCGTCTCCAGCATAAGCGCCGGC
GTTTGGAAGCGAAAAAGGCAGCCACGACCAAGGCTAAAGCTGAGGCCGCA
GAGTACCATCGCATCTTCCAGCAGCGCCTCAATGAACGGAAAGAGTCTCG
CCGGTCCGCCATCTCCAAGCGTCGTTCCTCCAGACGTGCGTCTGCCAAGG
TCGAATAAATGAAGCTCAACATTGCCAACCCTCAGACGGGTCAGCAGCAT
GTGGTAGAAATTGACGACGAGAAGCGTCTGCGAGCTTTCTACGACCGGCG
TATTTcgcaggaggtggacggggaACACATTGGGGACGAGTTCAAGGGCT
ATGTATTCAAAATCTCTGGCGGCAACGACAAACAGGGGTTCCCCATGAAG
CAGGGCGTGCTCACCGACCAGCGCGTCCGTCTCCTCTTGCGCAAGGGCTT
GTCCTGCTATCGAGCCCGCCGAAAGGGTGAGCGCAAGCGCAAGTCTGTCC
GCGGCGCTATCGTCGGACCTGACCTGTCGGTGCTGAACCTAGTTTTGGtg
aagcggggggaggaggatgtggtcgGCCTCACAGACAGTGCGGTCCCTCG
TCGCCTGGGCCCCAAGCGCGCGAACAACATTCGCAAGCTTTTCAACTTGT
CCAAAGATGCAGACGTCACCACATATCCTGTTGAGCGCAAGTTTGAGAAT
AAGAAGGGAAAAACTGTCGTCAAGAAACCCAAAATCCAGCGGCTCATCAC
ACCCCTTCGTCTCCAGCATAAGCGCCGGCGTTTGGAAGCGAAAAAGGCAG
CCACGACCAAGGCTAAAGCTGAGGCCGCAGAGTACCATCGCATCTTCCAG
CAGCGCCTCAATGAACGGAAAGAGTCTCGCCGGTCCGCCATCTCCAAGCG
TCGTTCCTCCAGACGTGCGTCTGCCAAGGTCGAATAA
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Synonyms
Publications