rna8822, rna8822 (mRNA) Nannochloropsis gaditana

Overview
Namerna8822
Unique Namerna8822
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length820
Alignment locationKK037250.1:249016..251185 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100159g10.6564.mrna
Orig protein idgnl|cribi|Naga_100159g10.6564
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:249016..251185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100159g10gene8553Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8822rna8822-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21886.1cds8792Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8822 ID=rna8822|Name=rna8822|organism=Nannochloropsis gaditana|type=mRNA|length=820bp
TGTAGGCACATATTATTGAACTTCAACACGCTCCTCAAATAGCAACTTCC
GATCAAAATAAAACGAATGCCAGCTTATGCACATCTACCCCTAGCCATGG
CTAAGACCAGTGTAAACAACATGGCGGAGGACAAGATAATAACCTCATAC
AAAGGAATATTTCCCGCGACCCCATCTTTTGGTTTTGGATCCTCCCCACG
TGACACCATTGCTCCTTCACATTCGGGTAACGACACGCCAGGACCTGGCG
CTTACAATCTGAAGTCAACTCTGTCAGGGCATGTGGCTGACTCCAGGATC
AGATCAACGAATGGCTTTTCTCTGCGCGGAAGAGAGGGATTTGGGAGTAA
AATCTTCACAAAGGATAGAGCGTGCGTCGATGAACCAGGTCCCGGAGCGT
ACCTTTCCTCACAAAGCCGGAAAGGAGGGTTGCTGAGTAACCCTAAACAT
CGAGCCGCGCCACAATTTTCCTTTCCAAAAGGCTGTTCTCCACGTAATAA
ATTGAGTATACAGCCAGGTCCTGGCCACTATCATTTCAAAGATACGTTAG
GCCCACAAGTTCTGTCCAGCAGGGCCAGTCCACCTGTTTCTACGTTCGGA
AAAGGCCGAAAGCGGCAGAGCTTCACAAGCGATTTAACCCCAGACCTAAC
GTCAAGTGGGGGGGGACCTGGTTTTTACAATGCCGTCAGTGCCTGCGGTA
AGCAGGTCGATTCAAGGAAGCGAAATGGCGGGGGGGTCCGCTTTGGGAAG
GCAGAAGGCCCTTCGACTTCGGTAAAAAGAAAGAATTTTTAGTATGTCAC
AATAGCTAGAGCTATATACT
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protein sequence of rna8822

>rna8822-protein ID=rna8822-protein|Name=rna8822|organism=Nannochloropsis gaditana|type=polypeptide|length=591bp
MRIFFFFAFLFAFILAQEVVRGFTGSSGGFSLSEIPEDLLDEDDASIVGN
ADGTDSWTSPISLSRTGGRRSGSLANHAMWNTLREQSHKALLPSIATVLA
GATGRILHKRYASVIRRAWHDHRAARHLGKEKRRLEREIQEEQGRYQQEM
RRISEEQEELDAAEEAEIQARDELRRARFQEVSSMPGEDEEQAHQRDRLQ
QQQHYRPDLKRKSFKDMLSFSGPSSSRRTAEDWRRVVGELETKIAALQRE
VREKAEMVSKLQSSKVEELNSARSVVDQLRKELEGARGMKEHLEGQLRQS
QVRLQTLKDQAEEGQGQKEPSENDLHLLRTDLEMRIRQEYAESRAQDQEA
WAREVRHQTVAEITAQTTAEREKYEADLVELYRRRLKEEVAKRDAVMEER
LQAQDVEYRRQCEELRLKVQGLLRERDHSLRDKLVLHAREWQQRVGAKGG
ASKRQRAAGGQAPVRVAGSGVNGSLFRGKGASAPSKVPRGGASAPTDTAQ
EWKGTREGGLVAELMDAEEAEARASTRAVGAREGGQGVPQGGDDGQEPSK
LVQQQRQRVSWGASGVGLTGVGGGGSGRRATSGAVGRRGGA
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mRNA from alignment at KK037250.1:249016..251185+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8822 ID=rna8822|Name=rna8822|organism=Nannochloropsis gaditana|type=mRNA|length=2170bp|location=Sequence derived from alignment at KK037250.1:249016..251185+ (Nannochloropsis gaditana)
TTCTTCACTTCCTTCTGTGCCCAACATGATCGACACCGTCCGTGGTTTTG
TCACGCACGGGCTTAACGAAAAAGTGCCAACCCATCACTACAGATTGTAA
GCATCTATCTAGAAAATTGGCCGCAAGGATGAGgatcttcttctttttcg
caTTCTTGTTCGCCTTCATTCTCGCTCAGGAAGTGGTTCGAGGGTTCACG
GGCAGCAGTGGGGGCTTCAGCTTAAGCGAGATTCCAGAGGATCTTCTGGA
TGAAGATGATGCCTCCATTGTTGGTAATGCTGACGGTACCGACTCGTGGA
CAAGCCCGATATCTCTCTCCCGGACCGGTGGCAGGCGTAGCGGCAGTCTG
GCGAACCATGCCATGTGGAATACTCTGCGCGAACAAAGCCACAAAGCTTT
GCTGCCGTCGATTGCCACAGTTCTTGCAGGTGCTACAGGTCGAATATTGC
ATAAGCGCTACGCATCGGTAATCCGTCGCGCATGGCATGACCATCGTGCC
GCCCGCCACttgggaaaggagaagcggcgCCTCGAAAGAGAAATCCAAGA
GGAACAAGGCCGCTATCAACAAGAGATGCGCCGGATCTcggaggaacagg
aggagctggacgcAGCCGAGGAAGCCGAAATTCAAGCGAGGGACGAATTG
CGACGTGCCCGCTTCCAGGAAGTGTCATCTATgcccggggaggacgagga
gcaagCACACCAACGAGATCGTCttcaacagcagcagcattaTCGACCAG
ATTTAAAAAGAAAGAGTTTCAAAGATATGCTTTCATTTTCTGGCCCGTCA
TCTTCGCGCCGGACTGCAGAGGACTGGAGGAGGGTCGTAGGGGAGCTGGA
AACGAAGATAGCCGCTCTCCAGAGGGAGGTTCGCgagaaggcggagatgg
TCTCGAAGCTCCAGTCTTCCAAGGTGGAAGAGCTTAATAGTGCCCGCTCG
GTGGTCGATCAGCTGCGGAAAGAGCTGGAGGGGGCGCGCGGGATGAAGGA
GCATTTGGAAGGGCAACTCCGGCAGAGTCAGGTGCGTCTGCAGACGTTGA
AGGAccaagcggaggagggccaggggcAGAAAGAGCCATCAGAGAATGAC
TTGCACCTTCTCCGCACTGACTTGGAAATGAGAATCCGGCAAGAATACGC
GGAAAGCCGTGCACAGGACCAAGAAgcgtgggcgagggaggtgcgGCACC
AGACGGTGGCTGAAATCACGGCGCAGACGACGGCGGAGCGCGAGAAGTAC
GAGGCCGACCTGGTTGAGCTTTACCGCCGACGTTTGAAAGAGGAAGTAGC
AAAGCGGGACGCGGTCATGGAGGAGCGTTTGCAGGCCCAGGACGTGGAGT
ATCGGCGGCAGTGTGAGGAGCTCCGGCTAAAGGTGCAGGGGCTGTTGAGG
GAGCGGGACCACAGTCTCCGCGACAAGCTGGTTCTGCATGCCCGAGAGTG
GCAGCAGCGGGTGGGAGCGAAAGGGGGCGCAAGCAAGAGGCAGCGAGCTG
CGGGTGGCCAAGCGCCTGTCCGCGTCGCGGGCAGTGGTGTGAACGGCAGC
CTTTTCCGCGGGAAAGGAGCCTCTGCCCCGTCCAAGGTACCTCGCGGCGG
GGCATCGGCCCCCACGGACACTGCccaggaatggaaaggaacgagggaag
gaggcttggTAGCGGAGTTGATGGACgcggaagaggcagaggctCGTGCG
AGCACGCGTGCGgtgggggccagggagggaggacagggggtTCCACAGGG
TGGCGATGACGGACAAGAACCTTCCAAGCTCgtgcagcaacagcgacaAC
GGGTCAGCTGGGGGGCCTCTGGGGTGGGATTGAccggggtcggaggggga
ggtagcggCAGGAGGGCCACGTCGGGGGCGgtcgggaggagaggaggcgc
gtgagcgggtgggagggaacaaaggccatggaagacggggagaggaCCCC
GGAGGCGCATATTCTAACAGACGaaacgggggagagggaggttgTGAGGT
GGCACAGCGTTACACGACTTGAGGGCTTGATTTTACGATGGAGGCACAGC
AACATATACTTGGCTGGATGTTGTAAATGTTTAAatggcaaggaaaggaa
tcTTTTGAGGACGGTGGATgtaaaagaggaaggaaattgAAATGCGGTGC
AGAGGCATCGGTCTCGATCT
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Coding sequence (CDS) from alignment at KK037250.1:249016..251185+

>rna8822 ID=rna8822|Name=rna8822|organism=Nannochloropsis gaditana|type=CDS|length=1776bp|location=Sequence derived from alignment at KK037250.1:249016..251185+ (Nannochloropsis gaditana)
ATGAGgatcttcttctttttcgcaTTCTTGTTCGCCTTCATTCTCGCTCA
GGAAGTGGTTCGAGGGTTCACGGGCAGCAGTGGGGGCTTCAGCTTAAGCG
AGATTCCAGAGGATCTTCTGGATGAAGATGATGCCTCCATTGTTGGTAAT
GCTGACGGTACCGACTCGTGGACAAGCCCGATATCTCTCTCCCGGACCGG
TGGCAGGCGTAGCGGCAGTCTGGCGAACCATGCCATGTGGAATACTCTGC
GCGAACAAAGCCACAAAGCTTTGCTGCCGTCGATTGCCACAGTTCTTGCA
GGTGCTACAGGTCGAATATTGCATAAGCGCTACGCATCGGTAATCCGTCG
CGCATGGCATGACCATCGTGCCGCCCGCCACttgggaaaggagaagcggc
gCCTCGAAAGAGAAATCCAAGAGGAACAAGGCCGCTATCAACAAGAGATG
CGCCGGATCTcggaggaacaggaggagctggacgcAGCCGAGGAAGCCGA
AATTCAAGCGAGGGACGAATTGCGACGTGCCCGCTTCCAGGAAGTGTCAT
CTATgcccggggaggacgaggagcaagCACACCAACGAGATCGTCttcaa
cagcagcagcattaTCGACCAGATTTAAAAAGAAAGAGTTTCAAAGATAT
GCTTTCATTTTCTGGCCCGTCATCTTCGCGCCGGACTGCAGAGGACTGGA
GGAGGGTCGTAGGGGAGCTGGAAACGAAGATAGCCGCTCTCCAGAGGGAG
GTTCGCgagaaggcggagatggTCTCGAAGCTCCAGTCTTCCAAGGTGGA
AGAGCTTAATAGTGCCCGCTCGGTGGTCGATCAGCTGCGGAAAGAGCTGG
AGGGGGCGCGCGGGATGAAGGAGCATTTGGAAGGGCAACTCCGGCAGAGT
CAGGTGCGTCTGCAGACGTTGAAGGAccaagcggaggagggccaggggcA
GAAAGAGCCATCAGAGAATGACTTGCACCTTCTCCGCACTGACTTGGAAA
TGAGAATCCGGCAAGAATACGCGGAAAGCCGTGCACAGGACCAAGAAgcg
tgggcgagggaggtgcgGCACCAGACGGTGGCTGAAATCACGGCGCAGAC
GACGGCGGAGCGCGAGAAGTACGAGGCCGACCTGGTTGAGCTTTACCGCC
GACGTTTGAAAGAGGAAGTAGCAAAGCGGGACGCGGTCATGGAGGAGCGT
TTGCAGGCCCAGGACGTGGAGTATCGGCGGCAGTGTGAGGAGCTCCGGCT
AAAGGTGCAGGGGCTGTTGAGGGAGCGGGACCACAGTCTCCGCGACAAGC
TGGTTCTGCATGCCCGAGAGTGGCAGCAGCGGGTGGGAGCGAAAGGGGGC
GCAAGCAAGAGGCAGCGAGCTGCGGGTGGCCAAGCGCCTGTCCGCGTCGC
GGGCAGTGGTGTGAACGGCAGCCTTTTCCGCGGGAAAGGAGCCTCTGCCC
CGTCCAAGGTACCTCGCGGCGGGGCATCGGCCCCCACGGACACTGCccag
gaatggaaaggaacgagggaaggaggcttggTAGCGGAGTTGATGGACgc
ggaagaggcagaggctCGTGCGAGCACGCGTGCGgtgggggccagggagg
gaggacagggggtTCCACAGGGTGGCGATGACGGACAAGAACCTTCCAAG
CTCgtgcagcaacagcgacaACGGGTCAGCTGGGGGGCCTCTGGGGTGGG
ATTGAccggggtcggagggggaggtagcggCAGGAGGGCCACGTCGGGGG
CGgtcgggaggagaggaggcgcgtga
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Synonyms
Publications