rna8819, rna8819 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8819
Unique Name	rna8819
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1976
Alignment location	KK037250.1:243490..246833 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100159g13.6555.mrna
Orig protein id	gnl\|cribi\|Naga_100159g13.6555
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:243490..246833 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100159g13	gene8550	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21877.1	cds8789	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8819	rna8819-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:243490..246833-
coding sequence from alignment at KK037250.1:243490..246833-

mRNA sequence

>rna8819 ID=rna8819|Name=rna8819|organism=Nannochloropsis gaditana|type=mRNA|length=1976bp
CACTTAAAAACAGGCAGTTTCCGAGACCAGCGTGCCATGCCATCGGGTGC
CCGACGGTCGTCCCGGGGGGGCGCAGGCAAGCCCCCCCCTGGAGAGGGAG
AGCGGGTGCCTGACTCGCAGCCCCCCGATGCTCCTGACAAGGATGCAGCG
CCGCTTTTCTACGTCGATCGAGAGGAAAACGAGATGGTTGGGACCCTAGA
CGTGGATAACGAGCTGGATCAAGAGGCAGGCGTGGGGCCGGAGGAGGCTA
ATATAATAGCACAGGCAGGGCCGTCCAAGCGCCAGAGGAAGCAAAACGAA
CAGCAAAGGCGGAGAAAGGTAGACGACGAAGCAGAGAAGGATGACGAAGA
ACGCACCTTGGAGCGTCTCGTATTTGGGGCCCGAGACACGGAAGCGCTTC
TCCAAGGTGAAGATGGTCTCACGCCACAGGACACAGTGTGGGAGGGAGGT
TTAGGAAACAATCATGAAGACGAGGTCGAAGGGAGTGGATCGACACGGAC
GCCCGCCTGGAAAGATGAGGACGATGAGACGCTTTGGGTGGATGTGGCGA
GAAAGGACAGGCTGCGTAAATTGCGCCGGCACCCGGACGAGAGGGACATT
AGCGGAGCCGATTACCAAGAGCGATTGCGTGCAAGGTTTGCGAAAGGTCA
TGAGGCAGCCTTGGACTGGGCAAGATTGCCGACAACTCCTGGAGACAGGG
GGGATGGGCGGCGAGGTAGGCGTCGACGTGGACGAGAGTGGGGAGGCGCA
GAGACTAGCGAGGAGGAGGAAGAGGAAGTGGTGGAGGGGGATGATGACTT
TGGAGGTCTTTTTCGGAGCAGTGCGCCTTTGGTGGTAGGTTCTGGCACAA
GCACTCGCCGGCGGCTTCAACCAGGAACCCTGGAGGTAGCTCGGTGTCGA
GATGCGAACTTGCAGGAGCCGTCGCAGGCCGTGGTGCAGGCCGTGCAGTT
CCATCCCTCCACAGGCGGACTCCTCTTCACGGCGGGCCTGGACAAGACCC
TGCGCTTCTTTCAAGTGGACGGAAAGCGGAACGACAAGGTGGCGGGCGTC
TTTTTCCAGGACTTGCCCATCCAGGCGGCGGCTTTCGTGGACGGGGGGGG
GGACAAATCCTTCCGGGAGGTGGTGGTGAGCGGGCGCCGACCTTTCTTCT
ACTGGCACGACCTGGAAGCGGGGGCTTCGAGTCGGGTGCCGCGGCTGATG
GGGCGGGAGGAGAAGAGCTTGGAGCGTTTCGTGGCCTCACCGGACGGGCA
ATGGCTGGCCTTCACAGGCAAGGACGGTTATGTGGTGCTGGTCGGGGCCC
GGAGCAAGCAGTGGGCGGGGGAGTTCAAGATGAACGGCACGGCCAGGGCG
CTGGCTTTCAGCGCGGACGGGCGGCACCTGATGGCCTCGGGGGGGGACGC
GGTCGTCTACCGCTGGGACCTACGGTCGCGGCGGTGCCTGGCTCGCTTTC
ACAATGAGGGCGGCACGGTTACCTCCGCGCTGGCCGCCTCCGCGGGCATG
CTGGCCGTGGGGGCGGAGAGCGGGGTGGTGAACCTGTACGAGGAGGAGGC
GGTGCTCGGGGGGGCTGCAGGGCCGGAGCATGGGCCGACATCCTGGCACT
CCACCGCCGCGCTCGCCCCGTGCAAGGCTTTGACGCACCTGATGACGGCC
GTCGACACGCTCGCCTTCAACCACGACGGCATGCTCCTGGCCATGGCCTC
CAAGTGGAACCGCGACGCCCTACGGGTCGTGCATGTGCCTTCGCGGACCG
TCTTCTCGAACTGGCCCACCGGGCAGACCCCCATCCGCTACCCATCCGCC
CTGGCCTTTAGCCCGAACAGCGGCATGCTTGCCGTTGGGAACGACCGCGG
CCGCGTCTTGCTTTACCGCCTGCGGCACTACGAGAGTAGTTGAAAGCCGA
AGGTGTCGGCGGGGGGGGTATCTTGAGGTGGGGAAAACGTGCAAAGAAGG
CAAAAGCATCCGCACGTCGCGTGCAA

protein sequence of rna8819

>rna8819-protein ID=rna8819-protein|Name=rna8819|organism=Nannochloropsis gaditana|type=polypeptide|length=571bp
MAAQGHGLAVAMRVLCWCLTLSFLVHAFTLQQQPKRHLHPLYAGGGGDKE
RVAKLLRLKKIKEGGGDYNRLLDGGVSGSEGGQEDYRYWDNDANDDAALP
DSSEYTAEDQEMYNELKRQEKQALLDKILKSKAQSQTQSSSTTLSTSSAS
PNKGQPSPYLARKLQQLQDVEKRFQNVETYKPQSTSWGEFARPKNIPDAF
GGGVHIPEGGVTLEGDKEWLAKYDTLMAQVREYKKGVQGTVLTPLEKADE
ERIKVARTQARKYMLRGEYEAAKAVLLPFRSICSVRSSLGASTLMDLAMA
HEAVYEFKEAQDIYTQVRSSPVKDLRAKAKALNLGAEAMKKLGLGSKSNV
NPRNMINFAYIPGQIEGSYGLYMKGKSSPSPDDSMSGLRIESVAQALEVL
EDAVIAQGVGVRFDAINAALRVVHQDVLRSDFASEGPSRRLAPVPVQDLD
GRWRCRLTAHQESVDFLTKVDVWQRVESETRTITGKLVVSPFEVVRDVKV
AFTFDGTGRVLNYGVEGSMASTLGIPTGLPHTLRVLAITDTMLVTARSSD
AKGTTPKESYEARFAVWTRAG

mRNA from alignment at KK037250.1:243490..246833-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8819 ID=rna8819|Name=rna8819|organism=Nannochloropsis gaditana|type=mRNA|length=3344bp|location=Sequence derived from alignment at KK037250.1:243490..246833- (Nannochloropsis gaditana)
CCGTGCCTTTCAATGCTCTCATCACGTGTGAAACGCACAAGCAGATTGGC
GGCAGGGCCCTCAGAGAGGCGACGTAGGCCATGGCGGCACAGGGTCATGG
CCTTGCGGTGGCAATGCGCGTGCTCTGTTGGTGCCTGACGTTATCTTTCC
TCGTGCACGCCTTCACGCTTCAGCAACAGCCGAAACGACACCTCCATCCC
TTGTATGCAGGAGGAGGCGGGGACAAAGAACGAGTTGCCAAACTCCTACG
TTTGAAAAAAATTAAGGAGGGTGGAGGAGACTATAACCGCTTACTTGATG
GAGGGGTCTCCGGCAGCGAGGGAGGACAAGAGGACTACAGGTACTGGGAT
AACGATGCGAATGACGACGCCGCACTGCCCGACTCATCAGAGTACACCGC
CGAGGATCAGGAGATGTACAACGAGCTGAAGCGACAGGAAAAGCAAGCCT
TGCTCGATAAGATCCTCAAGTCAAAGGCCCAGTCTCAGACCCAGTCTTCG
TCCACCACATTAAGCACCTCTTCCGCCTCGCCCAACAAGGGACAGCCCTC
GCCGTACCTGGCTCGTAAGCTGCAGCAGCTCCAGGATGTTGAAAAGCGCT
TCCAGAATGTGGAAACATACAAGCCTCAAAGTACGTCCTGGGGCGAGTTT
GCGCGACCGAAGAACATTCCTGACGCCTTCGGGGGAGGCGTGCACATCCC
CGAGGGCGGTGTCACCCTGGAGGGGGACAAGGAATGGCTGGCAAAGTACG
ATACGCTGATGGCTCAGGTGCGGGAATACAAGAAGGGAGTCCAAGGCACG
GTCCTGACCCCCCTCGAAAAGGCGGACGAGGAGCGTATCAAGGTAGCGAG
GACGCAGGCGCGTAAGTACATGCTGCGAGGCGAATACGAGGCCGCCAAGG
CCGTGCTCCTCCCCTTCCGCAGCATCTGCTCGGTACGGAGCTCATTGGGC
GCATCCACGCTCATGGATTTAGCCATGGCGCATGAGGCAGTGTACGAGTT
CAAGGAGGCCCAAGACATCTACACGCAGGTCAGGAGCTCGCCCGTGAAGG
ACCTGCGGGCCAAGGCGAAAGCGCTCAACCTGGGTGCGGAGGCCATGAAG
AAGCTGGGGCTCGGCTCCAAAAGCAATGTAAACCCACGCAACATGATCAA
TTTCGCCTACATACCGGGGCAGATCGAAGGGAGCTACGGCCTCTATATGA
AGGGAAAGAGCAGCCCTAGTCCGGACGACTCCATGTCGGGGCTCCGCATC
GAATCAGTAGCTCAGGCCCTTGAGGTACTTGAAGACGCCGTAATAGCCCA
GGGTGTGGGCGTCCGCTTCGATGCAATAAATGCTGCTCTGCGAGTGGTGC
ACCAAGATGTCTTGCGCAGCGATTTTGCGTCGGAAGGTCCCTCTCGACGC
CTGGCCCCTGTCCCCGTCCAAGACCTAGATGGTCGGTGGCGGTGCCGCCT
CACTGCCCATCAAGAAAGCGTCGATTTCCTCACCAAGGTTGACGTCTGGC
AGCGGGTTGAGTCTGAGACTAGGACAATTACCGGAAAGCTAGTCGTGTCG
CCATTCGAAGTTGTACGGGACGTAAAAGTCGCATTTACATTCGACGGCAC
GGGGCGCGTGTTAAATTATGGGGTTGAGGGGTCCATGGCTAGTACATTGG
GGATTCCTACTGGACTGCCACACACATTACGGGTCCTCGCCATCACTGAC
ACCATGTTGGTAACTGCTAGATCGTCGGATGCGAAAGGTACGACTCCAAA
GGAGTCATACGAGGCGCGATTTGCGGTGTGGACACGGGCGGGATAAGCAG
TAGGGCTCCAATTAGTTTGTGTATATACCTGCATGTTGATGGCAGAAGCT
GTCATGCGTTAGTAATTTGATAGGTCCAATAAATTATGTATTGAGTGGCG
AGTAATAAACAATGAACCAGTGAAAGCCGAGTCATAAGCTTCCCGGTGGT
GGGGGGGAGGTTATGAGGAGGTTATCGAGGGATCGATATGGCCCGTTTCG
CGGCCTGCGCGCACCTAGCACATGCTTAAACTTCGTACATTGTGTCACTT
CTATGCCTGCCGACTGTCAGCTTTGTATTGAATCCTCGGTCATAGCACAC
ACCCCTGAAATCTGTCTTTGTTCCGGCGGCTACATTTTTTAGGGCCGGAA
CCGGTTACGCGCTCCGTCGTTGCTCCTCTCCCCCAGCCCGCACGATGTAC
GTCTAAACAACGCATAAGAAGAGCATTGAATGCGTCTCGAAGGCCACCGA
TATGAAAAAAAGACCCGCTCGCGTCAGAATTTGTGATGAATTAGCTTGTT
GAAGGAGCAGGATTTGCATGCTTCTTCTGAATCTTGATCATCTCTTTCTT
TTGGCGTTGATAACAGGATGAACTCCGATGGCGCAAGCGAGGGTATGAAG
AGTATGGATAGCAATATGCCCATGCCGAGGTCGATGCCCATGTCCATGGA
TCTTACTCTCAAATGCACATGTCAAGTGGGCAAGCTTTTTATCGCAGCAT
GGGACATCGACACATGTTCGGTTTACTATGCTAGCCTTGCCGCAATCTGC
TTCTTCTGCTTCTTGCGGCATTTACTCACTATGCACAAGACTAGGCTGGT
TTTGCGCTTGGCTGAGCAAAATACAGGTATACATCTCTTGCATTTTAGTG
AGCGAATTCTACTTCCTCCATCTCCATGTCGTTGTTTCTCGTGCACAGGT
CAGGCAAGTGACGGGACGACATCCATGCTAGTAGGCTGCGCAGCGAGCAA
GCCTGGTCCGACGTCGTCGACGTATGGATCAACCTCAAGAAGTGCAAGGG
TGACAGACGAGGAGGAACAAGAGCTCGTGGGGAAAAATGGGAGCTGTGTC
GCCCGTGAGGCCTGCGTGTCGGATGCGTGTAAGCCTTTGCGGCTGCTGCC
CTCGGATGACGCGCTGGCCAAGTTTGGGTCCACAATCAGCGTGCGGGATC
GTATAGTGCTCACGTGCTACTTTGTGTTGTTGAGTACGTCGTCCTTGCTG
GTGATGCTTCTGGCGATGACTTTCAATCTAGGCGTCATCGCTGCCATCCT
GGTGGGGGAGGGGGCCGGCCACCTGGCCTTCGCGTCAGACGCCCTGCACA
ATCTCCTTCACGCGGGGAGTTTTCATTAGCCATAACCCCGTGGATGAATG
GGGTTAAATGTCAAATATAGGGATGGGTTAAGAAAGGCCTGCGAATCAGG
CAAAGTACATATAGCGAGGGTAGTCATGTATGGACAGAAAGAGAACGAAT
GCAGCAAAGGCATCATTCCTATGTCAAGGCAAGTGAAATGGAAGGGATGC
TTGATAACCAAATTAAAGCAATCCTTGGCAAGGCAATGATACCA

Coding sequence (CDS) from alignment at KK037250.1:243490..246833-

>rna8819 ID=rna8819|Name=rna8819|organism=Nannochloropsis gaditana|type=CDS|length=1716bp|location=Sequence derived from alignment at KK037250.1:243490..246833- (Nannochloropsis gaditana)
ATGGCGGCACAGGGTCATGGCCTTGCGGTGGCAATGCGCGTGCTCTGTTG
GTGCCTGACGTTATCTTTCCTCGTGCACGCCTTCACGCTTCAGCAACAGC
CGAAACGACACCTCCATCCCTTGTATGCAGGAGGAGGCGGGGACAAAGAA
CGAGTTGCCAAACTCCTACGTTTGAAAAAAATTAAGGAGGGTGGAGGAGA
CTATAACCGCTTACTTGATGGAGGGGTCTCCGGCAGCGAGGGAGGACAAG
AGGACTACAGGTACTGGGATAACGATGCGAATGACGACGCCGCACTGCCC
GACTCATCAGAGTACACCGCCGAGGATCAGGAGATGTACAACGAGCTGAA
GCGACAGGAAAAGCAAGCCTTGCTCGATAAGATCCTCAAGTCAAAGGCCC
AGTCTCAGACCCAGTCTTCGTCCACCACATTAAGCACCTCTTCCGCCTCG
CCCAACAAGGGACAGCCCTCGCCGTACCTGGCTCGTAAGCTGCAGCAGCT
CCAGGATGTTGAAAAGCGCTTCCAGAATGTGGAAACATACAAGCCTCAAA
GTACGTCCTGGGGCGAGTTTGCGCGACCGAAGAACATTCCTGACGCCTTC
GGGGGAGGCGTGCACATCCCCGAGGGCGGTGTCACCCTGGAGGGGGACAA
GGAATGGCTGGCAAAGTACGATACGCTGATGGCTCAGGTGCGGGAATACA
AGAAGGGAGTCCAAGGCACGGTCCTGACCCCCCTCGAAAAGGCGGACGAG
GAGCGTATCAAGGTAGCGAGGACGCAGGCGCGTAAGTACATGCTGCGAGG
CGAATACGAGGCCGCCAAGGCCGTGCTCCTCCCCTTCCGCAGCATCTGCT
CGGTACGGAGCTCATTGGGCGCATCCACGCTCATGGATTTAGCCATGGCG
CATGAGGCAGTGTACGAGTTCAAGGAGGCCCAAGACATCTACACGCAGGT
CAGGAGCTCGCCCGTGAAGGACCTGCGGGCCAAGGCGAAAGCGCTCAACC
TGGGTGCGGAGGCCATGAAGAAGCTGGGGCTCGGCTCCAAAAGCAATGTA
AACCCACGCAACATGATCAATTTCGCCTACATACCGGGGCAGATCGAAGG
GAGCTACGGCCTCTATATGAAGGGAAAGAGCAGCCCTAGTCCGGACGACT
CCATGTCGGGGCTCCGCATCGAATCAGTAGCTCAGGCCCTTGAGGTACTT
GAAGACGCCGTAATAGCCCAGGGTGTGGGCGTCCGCTTCGATGCAATAAA
TGCTGCTCTGCGAGTGGTGCACCAAGATGTCTTGCGCAGCGATTTTGCGT
CGGAAGGTCCCTCTCGACGCCTGGCCCCTGTCCCCGTCCAAGACCTAGAT
GGTCGGTGGCGGTGCCGCCTCACTGCCCATCAAGAAAGCGTCGATTTCCT
CACCAAGGTTGACGTCTGGCAGCGGGTTGAGTCTGAGACTAGGACAATTA
CCGGAAAGCTAGTCGTGTCGCCATTCGAAGTTGTACGGGACGTAAAAGTC
GCATTTACATTCGACGGCACGGGGCGCGTGTTAAATTATGGGGTTGAGGG
GTCCATGGCTAGTACATTGGGGATTCCTACTGGACTGCCACACACATTAC
GGGTCCTCGCCATCACTGACACCATGTTGGTAACTGCTAGATCGTCGGAT
GCGAAAGGTACGACTCCAAAGGAGTCATACGAGGCGCGATTTGCGGTGTG
GACACGGGCGGGATAA

Synonyms

Publications