rna8812, rna8812 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8812
Unique Name	rna8812
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1440
Alignment location	KK037250.1:227041..228623 +

Link to JBrowse

Properties


Property Name	Value
Product	hcp beta-lactamase-like protein
Orig transcript id	gnl\|cribi\|Naga_100231g4.10122.mrna
Orig protein id	gnl\|cribi\|Naga_100231g4.10122
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:227041..228623 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100231g4	gene8543	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8812	rna8812-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21891.1	cds8782	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:227041..228623+
coding sequence from alignment at KK037250.1:227041..228623+

mRNA sequence

>rna8812 ID=rna8812|Name=rna8812|organism=Nannochloropsis gaditana|type=mRNA|length=1440bp
TGCCAGCATCCGCTCCTCATACTCGGGATCGATAGCTTGAAGCCCCTCGA
TCATACTTGCCTCAATCTATCCAGGCCTAAGCAAAGTGTTCGTTGTGAGC
CAGTACTATTATTCATGTGTGATGTCGTGTCATTCATGTCATTCATTCAG
TCGCACCGGCGACTCTCACGAATCGATGCATGAGCTTCGCAACTTGCTAG
TGTATACGTACCGTTCCAGACTTCTCTTTGGTCCCGTCTTGGAGATCGTT
AATGATACAGAGGAATGCACGTCGCGAGTGGGGAGGTTGGTGAGTAGCTA
GTGTATACGTACCGTTCCACACTTCTCTTTGGTCCCGTCTTGGAGATCCT
TAAAGGTACAGAGGAATGCACGTCGCGAGTGGGGAGGTTGGTGAGTAGCA
ATTCGTCGCACATGGAGACGAAGCACTGTCATCAGGATGGCTGTGTGACC
TTCTAAGGAAGGATGTAAGGAAGCAGGCACGTACATCCCTGAGTCACATG
GATGGGCAAGTGCCTCGCCCAATTTTGACGTTCTCTCTTCCTAGTCCCCT
TGCAGAGGACAACCGCTTCCGCCTGGTTCGTTCCTTTTTCTTGCAGGTCG
CACAACTCCTCTTCAATTTGATATCAGTTCACTCTCGATTCAGATCGCGT
GGCTGAATGCCCCCGTTGCTTCCGACTTTGAGCAGAACCCTTATAAGTGC
TGCCTGCTTGTGCTTTACCGCTCCATCCTCCTTTGTCCTCCGTCCTTCGT
CAAGCCGCCCCGCCTCCACCGCCGTGGGAATGGCCGCTCAAGGTTTTTGC
TATAAATATCCCCGACCGTCGGTCACGGTTGACACTCTTGTCTTCTGTTT
GGATGAAACCCAGATGAAGATTTTGCTCGTTCAGCGCGGGAACGAGCCCT
TCAAAGGGGCTTGGGCTCTGCCGGGGGGGTTTGTCGATCAGGACGAGGGG
CTGGACTCCGCGGCGGCTCGGGAGCTCAGGGAAGAAACTGCTCTAGATAG
TATCTCGTTTGCACAGGTCGGTACTTATGGACAGCCAGGGCGAGACCCGC
GGGGACACACCATCACTGTGGCCTACACAGCATTCCTGCTGTCGTCTGAG
GGAGCAAGAGCTGGGGATGACGCCCGAGAGGCAAAGTTTTTCGCGTTCGG
CTCACTTCCTCCCCTAGCTTTCGACCACAAGAAAATCATTGAGGAGACGT
GGATGAGATTGGTCGTGTGTGACAAGGAGGGTACGACCGTGGTGAAGGAG
CGAGGAGCACAGCAAGTGCTGTGTAGGTTGCCAACAGCCAGCGCGGCACA
AGTCGTCAGATCTTCGAAGCCTTTCACATAAAATGAGGAAGAAATTGATA
CTCGACATCCGTATTAGTAGACTGCTTAATCTGTCGTTATTTTACACCAG
GAGCGTTTTGGCCTATTTTTATGTGCCGCCCGGGCACTCA

protein sequence of rna8812

>rna8812-protein ID=rna8812-protein|Name=rna8812|organism=Nannochloropsis gaditana|type=polypeptide|length=227bp
MIEGLQAIDPEYEERMLAFEMDCDKGKGDAWACHSVGEFLAVVKGDYNKA
AKVYTDNCAKYSHPPSCFNLGRLYLGGRGVPQSDTRSLKCFDTSCKAGHG
MACHHMGLLLLYGKDGGYDVSKDVKKATGILNKACGEGIPDSCYALASHL
LRHLPEDKSHERDALKAKGLLEQGCARGHGPSCFNLAVMHKKGDTGIPRN
EQEFEKYKKVTEDLVEQTGALTWKKGH

mRNA from alignment at KK037250.1:227041..228623+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8812 ID=rna8812|Name=rna8812|organism=Nannochloropsis gaditana|type=mRNA|length=1583bp|location=Sequence derived from alignment at KK037250.1:227041..228623+ (Nannochloropsis gaditana)
AGCCACGCGATCTGAATCGAGAGTGAACTGATATCAAATTGAAGAGGAGT
TGTGCGACctgcaagaaaaaggaacGAACCAGGCGGAAGCGGTTGTCCTC
TGCAAGGGGACTAGGAAGAGAGAACGTCAAAATTGGGCGAGGCACTTGCC
CATCCATGTGACTCAGGGATGTACGTGCCTGCTTCCTTACATCCTTCCTT
AGAAGGTCACACAGCCATCCTGATGACAGTGCTTCGTCTCCATGTGCGAC
GAATTGCTActcaccaacctccccactcgcGACGTGCATTCCTCTGTACC
TTTAAGGATCTCCAAGACGGGACCAAAGAGAAGTGTGGAACGGTACGTAT
ACACTAGCTActcaccaacctccccactcgcGACGTGCATTCCTCTGTAT
CATTAACGATCTCCAAGACGGGACCAAAGAGAAGTCTGGAACGGTACGTA
TACACTAGCAAGTTGCGAAGCTCATGCATCGATTCGTGAGAGTCGCCGGT
GCGACTGAATGAATGACATGAATGACACGACATCACACATGAATAATAGT
ACTGGCTCACAACGAACACTTTGCTTAGGCCTGGATAGATTGAGGCAAGT
ATGATCGAGGGGCTTCAAGCTATCGATCCCGAGTATGAGGAGCGGATGCT
GGCATTCGAAATGGACTGCgacaagggcaagggcgATGCATGGGCTTGCC
ATTCTGTGGGAGAATTTTTAGCCGTTGTCAAGGTGCGTTTGTCCACTAAT
GTGTCTGGAAAGTGCTATATCTGTCTCtcacgctttcccttccgcaGGGC
GACTACAACAAGGCGGCGAAGGTATACACAGACAATTGTGCAAAATACAG
TCACCCTCCCTCATGTTTTAATTTGGGACGCCTATATCTGGGCGGTCGCG
GGGTTCCTCAGAGCGACACGAGGTCGCTCAAGTGCTTTGACACTTCTTGT
AAAGCCGGGCACGGCATGGCCTGCCACCATATGGGGCTACTGCTCCTGTA
TGGGAAAGACGGCGGGTACGACGTTTCCAAGGACGTAAAGAAAGCGACGG
GTATCCTGAATAAGGCGTGCGGGGAGGGCATCCCTGATAGCTGCTACGCG
TTGGCCAGTCATCTGCTTCGGCACCTGCCGGAGGACAAGTCGCATGAACG
GGATGCTCTCAAGGCAAAGGGGTTATTGGAACAGGGTTGCGCGCGGGGAC
ATGGGCCCTCTTGTTTCAATTTGGCCGTCATGCACAAGAAGGGCGACACG
GGAATTCCTCGgtaagggcgggcggggtggtgggggtgttTGACGCTCAG
TTCACGGACACTTCCTTGCACAAATTCACAGAAACGAGCAAGAGTTTGAG
AAGTACAAAAAAGTAACggaggacctggtggagcAAACGGGCGCGCTGAC
GTGGAAGAAAGGGCACTAGAATACCCATGGCGTGCATGGCATACACGAGC
TGGAAGTCAACAATGCGTACAGGGGCATCTGCATTGTGCTTAGATGCCTA
ATATACCTAGGGTCGATGTTGCTTTGATTCGCTTTTTATAAGAATGTACA
GCGGGATTCAAACATGACCTCCCAGGGCTCACA

Coding sequence (CDS) from alignment at KK037250.1:227041..228623+

>rna8812 ID=rna8812|Name=rna8812|organism=Nannochloropsis gaditana|type=CDS|length=2052bp|location=Sequence derived from alignment at KK037250.1:227041..228623+ (Nannochloropsis gaditana)
ATGATCGAGGGGCTTCAAGCTATCGATCCCGAGTATGAGGAGCGGATGCT
GGCATTCGAAATGGACTGCgacaagggcaagggcgATGCATGGGCTTGCC
ATTCTGTGGGAGAATTTTTAGCCGTTGTCAAGGGCGACTACAACAAGGCG
GCGAAGGTATACACAGACAATTGTGCAAAATACAGTCACCCTCCCTCATG
TTTTAATTTGGGACGCCTATATCTGGGCGGTCGCGGGGTTCCTCAGAGCG
ACACGAGGTCGCTCAAGTGCTTTGACACTTCTTGTAAAGCCGGGCACGGC
ATGGCCTGCCACCATATGGGGCTACTGCTCCTGTATGGGAAAGACGGCGG
GTACGACGTTTCCAAGGACGTAAAGAAAGCGACGGGTATCCTGAATAAGG
CGTGCGGGGAGGGCATCCCTGATAGCTGCTACGCGTTGGCCAGTCATCTG
CTTCGGCACCTGCCGGAGGACAAGTCGCATGAACGGGATGCTCTCAAGGC
AAAGGGGTTATTGGAACAGGGTTGCGCGCGGGGACATGGGCCCTCTTGTT
TCAATTTGGCCGTCATGCACAAGAAGGGCGACACGGGAATTCCTCGAAAC
GAGCAAGAGTTTGAGAAGTACAAAAAAGTAACggaggacctggtggagcA
AACGGGCGCGCTGACGTGGAAGAAAGGGCACTAGATGATCGAGGGGCTTC
AAGCTATCGATCCCGAGTATGAGGAGCGGATGCTGGCATTCGAAATGGAC
TGCgacaagggcaagggcgATGCATGGGCTTGCCATTCTGTGGGAGAATT
TTTAGCCGTTGTCAAGGGCGACTACAACAAGGCGGCGAAGGTATACACAG
ACAATTGTGCAAAATACAGTCACCCTCCCTCATGTTTTAATTTGGGACGC
CTATATCTGGGCGGTCGCGGGGTTCCTCAGAGCGACACGAGGTCGCTCAA
GTGCTTTGACACTTCTTGTAAAGCCGGGCACGGCATGGCCTGCCACCATA
TGGGGCTACTGCTCCTGTATGGGAAAGACGGCGGGTACGACGTTTCCAAG
GACGTAAAGAAAGCGACGGGTATCCTGAATAAGGCGTGCGGGGAGGGCAT
CCCTGATAGCTGCTACGCGTTGGCCAGTCATCTGCTTCGGCACCTGCCGG
AGGACAAGTCGCATGAACGGGATGCTCTCAAGGCAAAGGGGTTATTGGAA
CAGGGTTGCGCGCGGGGACATGGGCCCTCTTGTTTCAATTTGGCCGTCAT
GCACAAGAAGGGCGACACGGGAATTCCTCGAAACGAGCAAGAGTTTGAGA
AGTACAAAAAAGTAACggaggacctggtggagcAAACGGGCGCGCTGACG
TGGAAGAAAGGGCACTAGATGATCGAGGGGCTTCAAGCTATCGATCCCGA
GTATGAGGAGCGGATGCTGGCATTCGAAATGGACTGCgacaagggcaagg
gcgATGCATGGGCTTGCCATTCTGTGGGAGAATTTTTAGCCGTTGTCAAG
GGCGACTACAACAAGGCGGCGAAGGTATACACAGACAATTGTGCAAAATA
CAGTCACCCTCCCTCATGTTTTAATTTGGGACGCCTATATCTGGGCGGTC
GCGGGGTTCCTCAGAGCGACACGAGGTCGCTCAAGTGCTTTGACACTTCT
TGTAAAGCCGGGCACGGCATGGCCTGCCACCATATGGGGCTACTGCTCCT
GTATGGGAAAGACGGCGGGTACGACGTTTCCAAGGACGTAAAGAAAGCGA
CGGGTATCCTGAATAAGGCGTGCGGGGAGGGCATCCCTGATAGCTGCTAC
GCGTTGGCCAGTCATCTGCTTCGGCACCTGCCGGAGGACAAGTCGCATGA
ACGGGATGCTCTCAAGGCAAAGGGGTTATTGGAACAGGGTTGCGCGCGGG
GACATGGGCCCTCTTGTTTCAATTTGGCCGTCATGCACAAGAAGGGCGAC
ACGGGAATTCCTCGAAACGAGCAAGAGTTTGAGAAGTACAAAAAAGTAAC
ggaggacctggtggagcAAACGGGCGCGCTGACGTGGAAGAAAGGGCACT
AG

Synonyms

Publications