rna8808, rna8808 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8808
Unique Name	rna8808
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2093
Alignment location	KK037250.1:218629..220611 +

Link to JBrowse

Properties


Property Name	Value
Product	atpase family aaa domain-containing protein
Orig transcript id	gnl\|cribi\|Naga_100231g9.10126.mrna
Orig protein id	gnl\|cribi\|Naga_100231g9.10126
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:218629..220611 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100231g9	gene8539	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8808	rna8808-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21895.1	cds8778	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:218629..220611+
coding sequence from alignment at KK037250.1:218629..220611+

mRNA sequence

>rna8808 ID=rna8808|Name=rna8808|organism=Nannochloropsis gaditana|type=mRNA|length=2093bp
CGTTACAACCTGGCCACTTCCGTGCGACAACGACTGAGAAAGTAGTTGAA
TGTGGGCACATAATCTGTGCCACAATCCAGCCCCCGTGTGTGGCTTGACT
TGTTGAGCCCATGCTTGCATTTATGCGTGCATGTCCGAGCCCGCCCTTCG
ATCTGCTCAGGGGCAAATACCATACCATGTCAGTAACTCCCTGGCTGAAT
TCAAGAACGACGAGCCCGTTGAATCCCCATCAGAACATGCAACAACAAAG
TGTAAGTATACGTAACCCATATATTGAATGGGTGCTGACAATATCACGGT
ACAAGATACAAAGTAAACGAGCTTAAAGCCTGTAAGCTTGTTACTGCTAC
TATTCCTTGTAACTACTAGTACCAATCAGTAGCAAGATGTAGTGAAAAAA
AATGTCACTTATGCTGTTTTTACAGTATCTCGCGCAAAACACAGCCGAGC
ATGAAGAATGTTTCTTAACCACAATCTGTGCAAATACATCAACTATGCCG
TAGGCAGCAGCCGTAACACGGGCCTCCCTGGACGGTTCTGTCGTCCATGG
CGGGGCCAATACACCAATTGCACTAAATCTGCCGTGGACGATCCATACTC
ACGAAGACCCGTGTTGCGGCTGCTGTTTTGGGCAGAGTTGGTGCAATTGG
TGTATTCGCAGCGGTTGCTTCCGCCATGGACGACACTTTGTCGATTCGGC
GGTGTTGACGTAGCCCGCCACTTTCCAGCACCCGTTTGCCATTCCCCGTC
ATTCTGTGGAACACGACGTTCTTCCTGTCTTCCTCCGTCCCCCCCCCATC
CCCCCCCTGGGTTTTACTTAGTTGGGCTCGCACTCCCTCTTATACCAAGG
AAATTCTGGCTACCCGCATCCATAGAGGGAGTTTCCGCGAGGAATTGCAC
GCCCATCCTCATGTCCTCTGCTCCTGCATTGTCCTCCTCGCCCGGCTCGG
CCCCGTCTTCCCTTTCTAATGGCTGACTTTCTTTGCAAGGGTCCTCGCCC
GAAGCAAAACACAAGCGCCCCTCCGCATCATCGAGGGCCCACTTACAAAT
AAGAGTACCTAGCAAGATGAACCTATGGCCAAAATATTTGCTGCATATCT
TATTTCATGCGAATCAGACTCTTGAAGGCGCTTTATGGCCCTCCAATGCG
TGGTCTGTAAAAAATATTCGTCAGCCGCCTAGGTTGATTATTGACAACAA
CGTCAAGTGGCCTATTGATATTGAAGTATGCATTGACGCGTTACGTCGAG
TTTCGCTGGACACAGCCAGCCTTTTCTGGGCATCTGTCCGTCGCTGAGCG
TCTTAAGGAGGAGAGAACGCAATCGAAATACTTGCCTGCAATCGAAATAC
AGGCTTGAAAAGGGGTCCCTGCCAACCCAAGAAAAACTTGTGAAGAGGGG
TTTTCCGAATGCGTCACACCAGGGTCTTTTTCGTCTGATAAGGACAGAGG
CGGGTCCGGCCCTCCTCATTAACTGAGCCCCCATTATAATCCTCGCTCAA
CGCTCCTGATTGTTCACCAGCGCTGCCCCTCCAATCTTCAGTCTCGCTCA
AAATAAGCATGTAGGAGGCAAGAAGGTGACACACGAAGCCCTCTCCCTCA
GTCAGGGAGTCGAAGTCGTCCATGCGGTCATAAGCATGTCAGTGCGCCTG
GACAGTGATAGGAAGGAATTTCTCCCCATCAAGAAAAAAACGCAACAATT
TAGCATGTATTGAATGCACTAAAAACGCATGTTCCAAGGAGTCATTGTTG
AACTTCACTTATTCTGGATGTAAAACTATGTCAATGTGCTCCCGCATCGT
CCTACATGGGCTCTCGACCTCAGTTGACCCGAGGCCGCGGTACAATGCAT
AAGGCAGTCGATCAATTTGTTATTGAGCAGTGGTTCTCGTATCTTGAGAA
TCGACTCTCATTTTTTTAATTTAGTTCAAATATTGTCAGGACCGACTTCA
ACGTTGAAAGAAGGGGTCGAGTCGACGACCTGTGTGTGAGGTCGACTTGG
CTGGTTTATTCGGAAAAGGGTAAATTGGGAACGGGGAACATATCTTTCCT
TTTATGAAAAACCACGACATGCTGCTTAATGTAGCCATCCTCC

protein sequence of rna8808

>rna8808-protein ID=rna8808-protein|Name=rna8808|organism=Nannochloropsis gaditana|type=polypeptide|length=443bp
MLRRASIARNFPVLEKVAGGRRNAERGQDKRAIGVVLLEWSLMVAGYYIL
YLSVNGIVTMMDPVKKDRGAGVQTKEALGKKADRSEIARLDLSPYERIIA
HEVLDAEQLEGGFDTIGGLEQQKREIFELAVLPLKRPDLFNKRGKLLGSP
KGILFYGAPGTGKTMLAKAIARESGAAFINLRMSTLTNKYFGESNKLVSA
VFSLANKLAPTIIFIDEIESFLRVRGRGDDAPWISLKAEFMTLWDGILTE
SAVPIMVLGASNRPYDLDPAILRRLPRQFEIPLPDPKQRAEILRLLLKEE
HVDYESVKLGALAAETEGYSGSDLKELCRAAVMMPVRDVMYLPAGGSLTA
LDVDGLQAEHLRQVTMEDLRNAMKRVKPTGHAAQDYERRESAHAEHTAHI
SPAFMNTALSLLLQSLVQGHVPQVPGAAHGQAGGDGRSNGRSV

mRNA from alignment at KK037250.1:218629..220611+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8808 ID=rna8808|Name=rna8808|organism=Nannochloropsis gaditana|type=mRNA|length=1983bp|location=Sequence derived from alignment at KK037250.1:218629..220611+ (Nannochloropsis gaditana)
GGCACAGATTATGTGCCCACATTCAACTACTTTCTCAGTCGTTGTCGCAC
GGAAGTGGCCAGGTTGTAACGATTGACTGGCGGATGGAAGCCTACAAGCG
TTCACTTCCAGGCTTAAGCGTTGCCTCCTGCCTTAAATAGGTCGACTGTC
ACTACATTCTCTCGCTTTTCCATTTCTGCTCACGAATTACCTTGATTTCT
ATTTCCGTATGACGCAGGTGTTTTGAGTGTGATAAGATATAGCGGTTGTA
CGCTTGATTTAGTGCAATATACCGAAGTAAGGGTTTCCGAAGAGAGTCTG
CAGAACTAGCTTTAGAGGGTGCGCACCATCCATCGTCTTTCACTTCAATT
TTAGACGGTCACACCCCCATGTTACGACGTGCCTCGATTGCGAGAAACTT
TCCAGTCCTCGAAAAGGTAGCAGGGGGCAGAAGAAACGCGGAACGGGGCC
AGGACAAACGGGCCATTGGTGTCGTCTTGTTAGAGTGGTCCCTGATGGTA
GCCGGCTACTACATTTTGTACCTGTCCGTCAATGGTATCGTCACCATGAT
GGACCCGGTAAAAAAGGATAGGGGCGCAGGAGTACAGGTACTTAAAGCTC
ATGTGGATAGTACGTGTACCTCTAGAATGTCGACGAACTtaaccacctcc
ctcttgtttTACACGCACCACAGACCAAAGAGGCCCTGGGGAAAAAAGCG
GACCGTTCTGAGATTGCGCGCCTGGATCTTTCGCCTTATGAGCGGATCAT
TGCCCACGAGGTCTTGGACGCAGAGCAGTTGGAGGGTGGGTTCGATACTA
TCGGCGGGCTAGAACAGCAAAAGAGGGAGATTTTCGAGCTGGCCGTGCTT
CCCCTGAAGCGCCCAGACCTTTTTAATAAGCGAGGGAAGCTTTTGGGTTC
GCCCAAGGGCATCCTTTTCTATGGCGCACCTGGGACTGGGAAGACTATGT
TGGCCAAGGCCATAGCGCGGGAGTCGGGCGCAGCTTTCATCAATTTGCGA
ATGAGCACGCTTACGAACAAGTACTTTGGCGAGTCCAATAAGCTCGTTTc
cgccgtcttctccctgGCCAATAAGCTGGCGCCCACCATTATCTTCATCG
ACGAGATCGAGTCCTTCCTGCGCgtgcggggccggggggacgACGCGCCC
TGGATCTCGCTCAAGGCCGAGTTTATGACCCTTTGGGACGGCATTCTCAC
CGAGAGCGCCGTGCCCATTATGGTGCTAGGGGCGAGCAATAGGCCCTACG
ATCTCGACCCAGCCattctccgccgcctcccaaGACAATTCGAGATACCA
CTCCCAGACCCCAAGCAGCGGGCGGAGATTCTGCGCTTgctgttgaagga
ggagcacgtTGACTACGAGTCGGTCAAACTAGGGGCATTAGCGGCCGAGA
CAGAGGGCTACTCAGGCAGCGACCTGAAGGAACTGTGCCGAGCCGCCGTC
ATGATGCCGGTCCGCGACGTGATGTACCTGCCCGCGGGCGGAAGTCTCAC
CGCCCTGGACGTGGATGGTTTGCAGGCGGAGCACCTGCGCCAGGTCACGA
TGGAGGACCTTCGGAACGCCATGAAGCGCGTCAAACCCACGGGCCACGCC
GCTCAGGACTATGAGCGGCGGGAAAGCGCCCATGCGGAGCACACAGCCCA
TATCTCTCCGGCCTTCATGAATACTGCGCTCTCTCTTCTGCTGCAAAGCT
TGGTACAAGGCCATGTCCCACAGGTGCCAGGAGCGGCCCACGGGCAGGCT
GGCGGTGACGGTCGCAGTAACGGGCGAAGTGTGTAAGCATAGCTGTGCGG
ATGGAGTtggctgggagggggggggaggggtctgACGTGTGCATAGAAAA
TAGATTGACATTTTTGTCCCAAAAATCTGCCCGATAGGTCCGCGGCGCTA
AAATCACATAAATGCCCGGCATCCGCAGGCTTTGTCAACCTGATTTCCTT
CATTGGGGAAGAAAACGTCGACAACTTGTACTC

Coding sequence (CDS) from alignment at KK037250.1:218629..220611+

>rna8808 ID=rna8808|Name=rna8808|organism=Nannochloropsis gaditana|type=CDS|length=2664bp|location=Sequence derived from alignment at KK037250.1:218629..220611+ (Nannochloropsis gaditana)
ATGTTACGACGTGCCTCGATTGCGAGAAACTTTCCAGTCCTCGAAAAGGT
AGCAGGGGGCAGAAGAAACGCGGAACGGGGCCAGGACAAACGGGCCATTG
GTGTCGTCTTGTTAGAGTGGTCCCTGATGGTAGCCGGCTACTACATTTTG
TACCTGTCCGTCAATGGTATCGTCACCATGATGGACCCGGTAAAAAAGGA
TAGGGGCGCAGGAGTACAGACCAAAGAGGCCCTGGGGAAAAAAGCGGACC
GTTCTGAGATTGCGCGCCTGGATCTTTCGCCTTATGAGCGGATCATTGCC
CACGAGGTCTTGGACGCAGAGCAGTTGGAGGGTGGGTTCGATACTATCGG
CGGGCTAGAACAGCAAAAGAGGGAGATTTTCGAGCTGGCCGTGCTTCCCC
TGAAGCGCCCAGACCTTTTTAATAAGCGAGGGAAGCTTTTGGGTTCGCCC
AAGGGCATCCTTTTCTATGGCGCACCTGGGACTGGGAAGACTATGTTGGC
CAAGGCCATAGCGCGGGAGTCGGGCGCAGCTTTCATCAATTTGCGAATGA
GCACGCTTACGAACAAGTACTTTGGCGAGTCCAATAAGCTCGTTTccgcc
gtcttctccctgGCCAATAAGCTGGCGCCCACCATTATCTTCATCGACGA
GATCGAGTCCTTCCTGCGCgtgcggggccggggggacgACGCGCCCTGGA
TCTCGCTCAAGGCCGAGTTTATGACCCTTTGGGACGGCATTCTCACCGAG
AGCGCCGTGCCCATTATGGTGCTAGGGGCGAGCAATAGGCCCTACGATCT
CGACCCAGCCattctccgccgcctcccaaGACAATTCGAGATACCACTCC
CAGACCCCAAGCAGCGGGCGGAGATTCTGCGCTTgctgttgaaggaggag
cacgtTGACTACGAGTCGGTCAAACTAGGGGCATTAGCGGCCGAGACAGA
GGGCTACTCAGGCAGCGACCTGAAGGAACTGTGCCGAGCCGCCGTCATGA
TGCCGGTCCGCGACGTGATGTACCTGCCCGCGGGCGGAAGTCTCACCGCC
CTGGACGTGGATGGTTTGCAGGCGGAGCACCTGCGCCAGGTCACGATGGA
GGACCTTCGGAACGCCATGAAGCGCGTCAAACCCACGGGCCACGCCGCTC
AGGACTATGAGCGGCGGGAAAGCGCCCATGCGGAGCACACAGCCCATATC
TCTCCGGCCTTCATGAATACTGCGCTCTCTCTTCTGCTGCAAAGCTTGGT
ACAAGGCCATGTCCCACAGGTGCCAGGAGCGGCCCACGGGCAGGCTGGCG
GTGACGGTCGCAGTAACGGGCGAAGTGTGTAAATGTTACGACGTGCCTCG
ATTGCGAGAAACTTTCCAGTCCTCGAAAAGGTAGCAGGGGGCAGAAGAAA
CGCGGAACGGGGCCAGGACAAACGGGCCATTGGTGTCGTCTTGTTAGAGT
GGTCCCTGATGGTAGCCGGCTACTACATTTTGTACCTGTCCGTCAATGGT
ATCGTCACCATGATGGACCCGGTAAAAAAGGATAGGGGCGCAGGAGTACA
GACCAAAGAGGCCCTGGGGAAAAAAGCGGACCGTTCTGAGATTGCGCGCC
TGGATCTTTCGCCTTATGAGCGGATCATTGCCCACGAGGTCTTGGACGCA
GAGCAGTTGGAGGGTGGGTTCGATACTATCGGCGGGCTAGAACAGCAAAA
GAGGGAGATTTTCGAGCTGGCCGTGCTTCCCCTGAAGCGCCCAGACCTTT
TTAATAAGCGAGGGAAGCTTTTGGGTTCGCCCAAGGGCATCCTTTTCTAT
GGCGCACCTGGGACTGGGAAGACTATGTTGGCCAAGGCCATAGCGCGGGA
GTCGGGCGCAGCTTTCATCAATTTGCGAATGAGCACGCTTACGAACAAGT
ACTTTGGCGAGTCCAATAAGCTCGTTTccgccgtcttctccctgGCCAAT
AAGCTGGCGCCCACCATTATCTTCATCGACGAGATCGAGTCCTTCCTGCG
CgtgcggggccggggggacgACGCGCCCTGGATCTCGCTCAAGGCCGAGT
TTATGACCCTTTGGGACGGCATTCTCACCGAGAGCGCCGTGCCCATTATG
GTGCTAGGGGCGAGCAATAGGCCCTACGATCTCGACCCAGCCattctccg
ccgcctcccaaGACAATTCGAGATACCACTCCCAGACCCCAAGCAGCGGG
CGGAGATTCTGCGCTTgctgttgaaggaggagcacgtTGACTACGAGTCG
GTCAAACTAGGGGCATTAGCGGCCGAGACAGAGGGCTACTCAGGCAGCGA
CCTGAAGGAACTGTGCCGAGCCGCCGTCATGATGCCGGTCCGCGACGTGA
TGTACCTGCCCGCGGGCGGAAGTCTCACCGCCCTGGACGTGGATGGTTTG
CAGGCGGAGCACCTGCGCCAGGTCACGATGGAGGACCTTCGGAACGCCAT
GAAGCGCGTCAAACCCACGGGCCACGCCGCTCAGGACTATGAGCGGCGGG
AAAGCGCCCATGCGGAGCACACAGCCCATATCTCTCCGGCCTTCATGAAT
ACTGCGCTCTCTCTTCTGCTGCAAAGCTTGGTACAAGGCCATGTCCCACA
GGTGCCAGGAGCGGCCCACGGGCAGGCTGGCGGTGACGGTCGCAGTAACG
GGCGAAGTGTGTAA

Synonyms

Publications