rna8807, rna8807 (mRNA) Nannochloropsis gaditana

Overview
Namerna8807
Unique Namerna8807
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2289
Alignment locationKK037250.1:216607..218699 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100231g10.10125.mrna
Orig protein idgnl|cribi|Naga_100231g10.10125
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:216607..218699 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100231g10gene8538Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21894.1cds8777Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8807rna8807-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8807 ID=rna8807|Name=rna8807|organism=Nannochloropsis gaditana|type=mRNA|length=2289bp
ATGGTACCTTCCTCCCTCTCCTCCTCCTTGCCATCTTTGGAGCCACGCGT
CACAGCGCTGAGGACACCTGCAGGTCTGACACACGAGACAGCTCACTCAA
GTCCATGCGCATTAGTCAGTGGTATATCTTGTCTTTGCCTTCTGGAGGTA
GCTTTGGCAAAGCAAGCCCTCGCCGCTGGTCCTTTGACAAATAAAATAAC
ATGTCAACAACGGGCACTTCGTGTTCTGGTGCAGCAAGAACGCTTGAAGA
TTGTCCAACAACAAGTACAAGAGTATCCGCTTCCTGAGGCTTCATCAACG
GCTGAGAGAGTAACAGTTACGTCCGAATTGCTGAGTGACGCCTCTTTTTT
GACAGACGAGGAGGATGTGCTGGCACTAATGACAAGGTGGGATGGTCCGA
CTCCCAGCCATGAATCGCCTCTCCAAAATGTAGTGATGGAACAAGGGCGG
ACATCGGTAATCAAGGAGTACAGAACAAAGGAGCGACAAGACGCAGCGGC
GCTGAAGAACCTTCTTCAGCATCACCATCTATCGGACAGTACGCTCACAG
AGGTCCAGCGTCAAGGTCCATTTGCGCCCCCAACCTCTTCGAGGCAACCT
CATGTGATCTCCAATGTCTCAATACAGCATTTTCGTTCACCTGTTTCTTA
TGGCGGGGCGGTAACGTCATCTCACCATGATGCCCTTGTGCCGCAGAAGC
CAGTGCCCTTTTCAAGGCAGGAGAACGAGGACGCGCAGCAAAAGCAGCGT
CCTGCGTATACCTCACATTTCTCTACAGCGGGAGAATTGCGAGACAAGAG
CCGCAAGCGTCCCTTTGCTGGCGCGGAAAGCGGGAGGGGAGCCTTAAGTG
GTTTCGGACGTGAAGGAGGGCGTGGAGAAGATTCTGCGGAGCTGCAACAC
TCGCTGTTGTCGTCTCGTGAGGAGCGGCCATTGCCAGAGCCGGCGAAAGC
GAATGCTGAACAATCCAAATTTATGTTCTCGACTTGCATAAGGCAAAGTG
GAAAGACGTGTGGTGGGCCGAATTGGAGTCAGGCTCAGGAGCGCAGCGGT
CCATCAACTTCCTGGATCCAGCCGCCGTCGCGCTCTTGTATGTTGCAGCA
AAACGAAGAAAATATGAGTCGGGCGGGCCCACCTGCGCCCGTTTCAGCTC
CATCTCGCGTGATGAAAAAGTTTGTACCACCCGTCAAGGGCTCGAGTGAG
ACGAACGGGCGAGGAGGGGCGAGCGTTGGGGGGAAGAAGGGGATCAGTGG
CATGGTGGAAAACGCCTTCAGAGGTTCTGTGCAGCAACCGCAGGCACAGA
GGCACGGAACCAGCGGGGATAAAGGGCCGGGAGAGGAACTTCCGGAGGAA
CTGAAAGGCTGTGACCCGCTGCTTATTGAGAGGATCGAGCAGGAGATCAT
CGACCGCGGGGACCCCGTCACTTTCGATGACATCGCCGGGCTTGCCTTCG
CCAAACAGACGATCCTGGAGCTAATTTGCTGGCCCATGTCTCGACCTGAC
ATATTTACAGGCTTGCGCGCCTTACCTCGGGGCCTGTTGCTCTTCGGACC
ACCGGGCACGGGCAAGACCCTCATCGCCAAGGCCATCGCCCATCAGTCAG
GGGCCACCTTCTTCAACATCTCCGCCTCCTCCCTCACGTCAAAGTGGATC
GGGGAGGGAGAGAAGCTCGTGCGTACACTCTTCCGGCTGGCGGCCTACAT
GAGCCCGTCCATTGTCTTCATCGACGAGGTCGACTCACTTTTGTGCCAGC
GCAGTGCCGACGAGAACGAGGCGAGCAGACGCATGAAAACTGAGTTCCTG
GTTCAGCTCGATGGCTGTGGCAGCGCCGCGGCGGCGGCGCGAGTCCTCCT
GGTGGGCGCGACGAATCGACCGCAAGAACTGGATGAGGCGGCGAGAAGGC
GTTTCGTGAAGCGGCTCTACATTCCGCTGCCAGAGGCGGAAGCTCGACAT
GCTCTAATTGTCCTTCTCCTGCGCACCAACAACCACCAGCTTACCCCGCA
GGAAATCGAGCAGGTAGTGACGCGCTCCCGTGGTTTCAGCGGCTCAGACG
TCCATCAGCTCTGCACTGAGGCGGCCATGGGACCCATCCGCGACATGACT
GCGGGCTTGGCTGGCGACATCACTGCACTTGCTGTCGCCGACGTCCCTCC
CATTCAGTTCCGCCACTTCCTGGAGGCACTGTCAACTCTGCGGCCTTCCG
TGAGTGAAAAGGACTTGGACACCCTTCTGGCTTGGAATGACGACTTTGGC
ACCTTTTCACGACAAAAATGTAACGTCGGGGAAGGTTAG
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protein sequence of rna8807

>rna8807-protein ID=rna8807-protein|Name=rna8807|organism=Nannochloropsis gaditana|type=polypeptide|length=172bp
MFLNHNLCKYINYAVGSSRNTGLPGRFCRPWRGQYTNCTKSAVDDPYSRR
PVLRLLFWAELVQLVYSQRLLPPWTTLCRFGGVDVARHFPAPVCHSPSFC
GTRRSSCLPPSPPHPPPGFYLVGLALPLIPRKFWLPASIEGVSARNCTPI
LMSSAPALSSSPGSAPSSLSNG
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mRNA from alignment at KK037250.1:216607..218699-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8807 ID=rna8807|Name=rna8807|organism=Nannochloropsis gaditana|type=mRNA|length=2093bp|location=Sequence derived from alignment at KK037250.1:216607..218699- (Nannochloropsis gaditana)
CGTTACAACCTGGCCACTTCCGTGCGACAACGACTGAGAAAGTAGTTGAA
TGTGGGCACATAATCTGTGCCACAATCCAGCCCCCGTGTGTGGCTTGACT
TGTTGAGCCCATGCTTGCATTTATGCGTGCATGTCCGAGCCCGCCCTTCG
ATCTGCTCAGGGGCAAATACCATACCATGTCAGTAACTCCCTGGCTGAAT
TCAAGAACGACGAGCCCGTTGAATCCCCATCAGAACATGCAACAACAAAG
TGTAAGTATACGTAACCCATATATTGAATGGGTGCTGACAATATCACGGT
ACAAGATACAAAGTAAACGAGCTTAAAGCCTGTAAGCTTGTTACTGCTAC
TATTCCTTGTAACTACTAGTACCAATCAGTAGCAAGATGTAGTGAAAAAA
AATGTCACTTATGCTGTTTTTACAGTATCTCGCGCAAAACACAGCCGAGC
ATGAAGAATGTTTCTTAACCACAATCTGTGCAAATACATCAACTATGCCG
TAGGCAGCAGCCGTAACACGGGCCTCCCTGGACGGTTCTGTCGTCCATGG
CGGGGCCAATACACCAATTGCACTAAATCTGCCGTGGACGATCCATACTC
ACGAAGACCCGTGTTGCGGCTGCTGTTTTGGGCAGAGTTGGTGCAATTGG
TGTATTCGCAGCGGTTGCTTCCGCCATGGACGACACTTTGTCGATTCGGC
GGTGTTGACGTAGCCCGCCACTTTCCAGCACCCGTTTGCCATTCCCCGTC
ATTCTGTGGAACACGACGTTCTTCCTGTCTTCCTCCGTCCCCCCCCCATC
CCCCCCCTGGGTTTTACTTAGTTGGGCTCGCACTCCCTCTTATACCAAGG
AAATTCTGGCTACCCGCATCCATAGAGGGAGTTTCCGCGAGGAATTGCAC
GCCCATCCTCATGTCCTCTGCTCCTGCATTGTCCTCCTCGCCCGGCTCGG
CCCCGTCTTCCCTTTCTAATGGCTGACTTTCTTTGCAAGGGTCCTCGCCC
GAAGCAAAACACAAGCGCCCCTCCGCATCATCGAGGGCCCACTTACAAAT
AAGAGTACCTAGCAAGATGAACCTATGGCCAAAATATTTGCTGCATATCT
TATTTCATGCGAATCAGACTCTTGAAGGCGCTTTATGGCCCTCCAATGCG
TGGTCTGTAAAAAATATTCGTCAGCCGCCTAGGTTGATTATTGACAACAA
CGTCAAGTGGCCTATTGATATTGAAGTATGCATTGACGCGTTACGTCGAG
TTTCGCTGGACACAGCCAGCCTTTTCTGGGCATCTGTCCGTCGCTGAGCG
TCTTAAGGAGGAGAGAACGCAATCGAAATACTTGCCTGCAATCGAAATAC
AGGCTTGAAAAGGGGTCCCTGCCAACCCAAGAAAAACTTGTGAAGAGGGG
TTTTCCGAATGCGTCACACCAGGGTCTTTTTCGTCTGATAAGGACAGAGG
CGGGTCCGGCCCTCCTCATTAACTGAGCCCCCATTATAATCCTCGCTCAA
CGCTCCTGATTGTTCACCAGCGCTGCCCCTCCAATCTTCAGTCTCGCTCA
AAATAAGCATGTAGGAGGCAAGAAGGTGACACACGAAGCCCTCTCCCTCA
GTCAGGGAGTCGAAGTCGTCCATGCGGTCATAAGCATGTCAGTGCGCCTG
GACAGTGATAGGAAGGAATTTCTCCCCATCAAGAAAAAAACGCAACAATT
TAGCATGTATTGAATGCACTAAAAACGCATGTTCCAAGGAGTCATTGTTG
AACTTCACTTATTCTGGATGTAAAACTATGTCAATGTGCTCCCGCATCGT
CCTACATGGGCTCTCGACCTCAGTTGACCCGAGGCCGCGGTACAATGCAT
AAGGCAGTCGATCAATTTGTTATTGAGCAGTGGTTCTCGTATCTTGAGAA
TCGACTCTCATTTTTTTAATTTAGTTCAAATATTGTCAGGACCGACTTCA
ACGTTGAAAGAAGGGGTCGAGTCGACGACCTGTGTGTGAGGTCGACTTGG
CTGGTTTATTCGGAAAAGGGTAAATTGGGAACGGGGAACATATCTTTCCT
TTTATGAAAAACCACGACATGCTGCTTAATGTAGCCATCCTCC
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Coding sequence (CDS) from alignment at KK037250.1:216607..218699-

>rna8807 ID=rna8807|Name=rna8807|organism=Nannochloropsis gaditana|type=CDS|length=519bp|location=Sequence derived from alignment at KK037250.1:216607..218699- (Nannochloropsis gaditana)
ATGTTTCTTAACCACAATCTGTGCAAATACATCAACTATGCCGTAGGCAG
CAGCCGTAACACGGGCCTCCCTGGACGGTTCTGTCGTCCATGGCGGGGCC
AATACACCAATTGCACTAAATCTGCCGTGGACGATCCATACTCACGAAGA
CCCGTGTTGCGGCTGCTGTTTTGGGCAGAGTTGGTGCAATTGGTGTATTC
GCAGCGGTTGCTTCCGCCATGGACGACACTTTGTCGATTCGGCGGTGTTG
ACGTAGCCCGCCACTTTCCAGCACCCGTTTGCCATTCCCCGTCATTCTGT
GGAACACGACGTTCTTCCTGTCTTCCTCCGTCCCCCCCCCATCCCCCCCC
TGGGTTTTACTTAGTTGGGCTCGCACTCCCTCTTATACCAAGGAAATTCT
GGCTACCCGCATCCATAGAGGGAGTTTCCGCGAGGAATTGCACGCCCATC
CTCATGTCCTCTGCTCCTGCATTGTCCTCCTCGCCCGGCTCGGCCCCGTC
TTCCCTTTCTAATGGCTGA
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Synonyms
Publications