rna8801, rna8801 (mRNA) Nannochloropsis gaditana

Overview
Namerna8801
Unique Namerna8801
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1233
Alignment locationKK037250.1:201813..203579 -

Link to JBrowse

Properties
Property NameValue
Productglutathione synthetase
Orig transcript idgnl|cribi|Naga_100070g27.4229.mrna
Orig protein idgnl|cribi|Naga_100070g27.4229
GenegshB
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:201813..203579 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gshBgene8532Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21915.1cds8771Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8801rna8801-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8801 ID=rna8801|Name=rna8801|organism=Nannochloropsis gaditana|type=mRNA|length=1233bp
ATGGTGCAAACACGCCGGATGACCATGACAACGAAAGCAGCCAACACGGA
CTTTACCAAGAGGGATGAAACCTTCACTGCCAACCCCCCCAAAAAAAATA
TCAGTAACGCGATTCGACTGATGGCAAAAGCCCTGGGTATTTATGTTTGT
TTCATTTATTGGGGCTTTGTGCAGGAGAAAGTCACCACCACCGCATATAA
ATCTGCTGCCGGACGCCAAGAAAAACCAGGCATTTTTAATGCCATGATCA
CTCTTAATGCCTTCATGGCCGCTGCAGCGACTATAGTCGGCGTGCTTCTG
CACCAGGTCAACAAAGGCACCACGGCACCATTCTCAATTTTCTGGCGCCC
TGCGCTCTCTAATACTCTTGCCTCGCCAATAGGGTACTTGTCGTTGCGAG
ACATAAGCTATCCTCTTCTTATTCTCGTCAAAAATTGCAAGCTTTTACCT
GTCATGTTAGTCGGCGCGCTTGTGAACGGCGTTCGATATAAGCCTCACGA
ATATGCTGCTGTCGCTCTGATTTCATGCGGAGTCATGCTTTTTATGTTCA
AAGGTCCTGAAGTAAGCGATGCGGACGTTGGTCACGATTCTGGCTGGAGC
AAGTCCATACGCACTGCAAGCCACCCAAGACGTTCCAGTCTTGGGGACGC
GATCGCGCGGGACAATTTATGGATGATAATTCAGGCCCTAGGAGGAATGG
TTTATTCCAGTTTTTCTCTGCAGGAGCTGCGTGGCCTCTGTATGGCTATA
ATTAATCTACTCATCGATGGATTCACTAATGCGGAGCAAGATCGCATCAA
CAAGAAACATCGCGTCTCTCCGTACTACATGATGGCCATGGTCAATACTT
GGTCCCTTTGCTTCGCATTAAGCTTCCTTCTTCTGGACCTGATTTGGCGC
AATCAGGGCTCACAATTGGCCTACACAATCCATTTTTTGACTGCCTACCC
GGCCATCATCACGGACATTCTTACCTTCAGTTTCTCCAACGCCCTCGGCC
AGGTCTTCATATACAGTATCATTGACGAATTCGGGAGTCTGACCTGTGTC
ACCGTCACAATAACCCGGAAAATAATAACACTTTTCATTAGTATCGTCAT
TTACAAGCATACAGTGCACTGGTGGCAGTGGATGGGAGTGTTTTCTGTAT
TCCTGGGCCTCTGCATCAAGATCTTTCAGAGCGGCGGGGACCACGGCCAC
GGCCCATTAGAGTCCAAAGCGAAGACAGCGTAG
back to top

protein sequence of rna8801

>rna8801-protein ID=rna8801-protein|Name=rna8801|organism=Nannochloropsis gaditana|type=polypeptide|length=588bp
MRTYDKTDVALPLAPRNEEETTVLLQEALGMAATTGLLMRSAGGSRTDSA
HVKPAFCHAPVCLLPNALPVQEYVKARRLATIWNLLVARIAHDGPWLLQT
LASVLPHDEFTRRLVEIFQAINGAGRDVQKIQLGITRSDYMLHAGESGSG
SPELKQVEINTIAASFGCLSTQVTRLHQYLVQKVLGHSRLSSKSFILPHN
ETMRGLAHGLAAAHKEYLRQESVMFKPSQPSRPGRRPCVLMLVQADERNI
NDQKLLEICLWEEFGVLLHRATLLEVARNAHLDLQRRQNLLLVSPLISDT
GEEDVQEAEVEVTVAYFRAGYDPSDYSSEGEWKGRELIEMSAAIKCPSIS
HHLAGTKKVQEALCRPGVLERFLKDAEDVDAIRNCFVGLYGLDPECEGAT
AAVAAACNSPQHFVLKPQREGGGHNLYDQDLVEALSQMTAEERAAYILME
KIRPPPFEAFFLRDCSVLRGLAVLELGVYGVYLGDGEGKRVILNESVGHL
LRTKLASSHEGGVAAGFAVLSSPLLVGGGEDSGILSKKYFSTLREFTMSA
RVWRRQRFWKIGATGIAFWGVGLFLTYIAVSKRSGKLQ
back to top

mRNA from alignment at KK037250.1:201813..203579-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8801 ID=rna8801|Name=rna8801|organism=Nannochloropsis gaditana|type=mRNA|length=1767bp|location=Sequence derived from alignment at KK037250.1:201813..203579- (Nannochloropsis gaditana)
ATGAGAACATACGATAAGACGGACGTGGCCTTGCCTCTGGCTCCACGCAA
TGAAGAAGAAACTACCGTTTTACTTCAAGAGGCCCTAGGGATGGCAGCCA
CGACCGGATTGCTTATGCGAAGCGCGGGCGGTAGCCGGACTGACAGCGCT
CATGTCAAGCCTGCATTCTGCCACGCACCCGTGTGCTTGCTTCCCAACGC
ACTCCCCGTCCAGGAGTACGTCAAGGCTAGGCGCTTGGCCACAATCTGGA
ACCTGCTCGTCGCACGGATTGCTCACGATGGGCCATGGCTACTGCAAACA
CTGGCAAGCGTGCTCCCTCATGATGAATTTACCCGGCGGCTTGTTGAAAT
CTTCCAGGCAATCAATGGAGCCGGACGGGACGTGCAAAAAATTCAATTGG
GTATCACTCGCAGCGACTACATGCTCCACGCAGGAGAAAGCGGTTCGGGT
TCGCCTGAGCTGAAACAGGTGGAGATCAACACCATTGCCGCCTCCTTCGG
CTGCTTGTCCACCCAGGTCACGCGGTTGCATCAATATCTTGTTCAGAAAG
TCCTCGGCCACTCCCGTCTGTCTTCAAAATCCTTTATCCTTCCACATAAT
GAGACCATGCGAGGGCTGGCTCATGGGCTCGCCGCAGCGCATAAGGAATA
TCTGCGGCAAGAATCTGTGATGTTCAAGCCCTCCCAGCCCTCCCGACCTG
GTCGCCGCCCCTGCGTGCTCATGCTGGTTCAAGCTGATGAGCGCAACATA
AACGATCAGAAACTCCTAGAAATCTGTCTTTGGGAGGAATTCGGCGTTCT
TCTACACCGTGCTACGCTCCTGGAAGTCGCTCGTAATGCGCATTTGGACC
TGCAGCGACGCCAAAATTTGTTGCTCGTGTCGCCCTTAATCTCAGACACG
GGCGAGGAAGATGTGCAAGAAGCAGAGGTGGAAGTAACGGTTGCGTATTT
TCGCGCAGGATACGATCCCAGCGACTATTCGAGCGAAGGAGAGTGGAAAG
GGCGGGAACTTATAGAGATGTCGGCTGCCATAAAGTGTCCTAGCATATCC
CACCATCTGGCCGGCACCAAGAAAGTCCAGGAAGCTCTCTGTCGGCCGGG
GGTGCTCGAACGTTTCCTTAAAGATGCCGAAGATGTGGATGCCATCCGGA
ACTGTTTTGTTGGGTTGTACGGACTTGACCCGGAATGTGAAGGCGCAACG
GCGGCGGTGGCTGCGGCCTGTAATAGTCCTCAACACTTTGTGCTGAAGCC
TCAACGTGAAGGGGGCGGGCATAACTTGTATGACCAGGATCTTGTGGAGG
CATTGTCACAGATGACAGCAGAGGAGCGAGCTGCCTACATACTGATGGAG
AAAATTCGACCTCCGCCATTTGAAGCATTTTTCCTTCGAGACTGCAGTGT
CCTTCGCGGACTTGCAGTTCTCGAGTTGGGTGTTTACGGAGTGTACTTGG
GTGACGGTGAAGGTAAACGCGTCATTCTCAACGAATCTGTCGGCCATCTG
TTGAGGACAAAGCTGGCTAGCAGCCACGAAGGCGGAGTCGCCGCAGGATT
TGCCGTCCTCAGTAGTCCTTTGCTAGTCGGAGGAGGTGAAGATAGTGGCA
TATTGAGCAAAAAGTATTTTTCGACATTGCGAGAGTTCACCATGTCGGCG
CGTGTCTGGCGAAGACAAAGATTTTGGAAAATAGGTGCAACGGGCATAGC
CTTTTGGGGAGTCGGGTTGTTTTTAACATACATTGCTGTAAGCAAGAGAA
GTGGAAAGTTGCAATAG
back to top

Coding sequence (CDS) from alignment at KK037250.1:201813..203579-

>rna8801 ID=rna8801|Name=rna8801|organism=Nannochloropsis gaditana|type=CDS|length=1767bp|location=Sequence derived from alignment at KK037250.1:201813..203579- (Nannochloropsis gaditana)
ATGAGAACATACGATAAGACGGACGTGGCCTTGCCTCTGGCTCCACGCAA
TGAAGAAGAAACTACCGTTTTACTTCAAGAGGCCCTAGGGATGGCAGCCA
CGACCGGATTGCTTATGCGAAGCGCGGGCGGTAGCCGGACTGACAGCGCT
CATGTCAAGCCTGCATTCTGCCACGCACCCGTGTGCTTGCTTCCCAACGC
ACTCCCCGTCCAGGAGTACGTCAAGGCTAGGCGCTTGGCCACAATCTGGA
ACCTGCTCGTCGCACGGATTGCTCACGATGGGCCATGGCTACTGCAAACA
CTGGCAAGCGTGCTCCCTCATGATGAATTTACCCGGCGGCTTGTTGAAAT
CTTCCAGGCAATCAATGGAGCCGGACGGGACGTGCAAAAAATTCAATTGG
GTATCACTCGCAGCGACTACATGCTCCACGCAGGAGAAAGCGGTTCGGGT
TCGCCTGAGCTGAAACAGGTGGAGATCAACACCATTGCCGCCTCCTTCGG
CTGCTTGTCCACCCAGGTCACGCGGTTGCATCAATATCTTGTTCAGAAAG
TCCTCGGCCACTCCCGTCTGTCTTCAAAATCCTTTATCCTTCCACATAAT
GAGACCATGCGAGGGCTGGCTCATGGGCTCGCCGCAGCGCATAAGGAATA
TCTGCGGCAAGAATCTGTGATGTTCAAGCCCTCCCAGCCCTCCCGACCTG
GTCGCCGCCCCTGCGTGCTCATGCTGGTTCAAGCTGATGAGCGCAACATA
AACGATCAGAAACTCCTAGAAATCTGTCTTTGGGAGGAATTCGGCGTTCT
TCTACACCGTGCTACGCTCCTGGAAGTCGCTCGTAATGCGCATTTGGACC
TGCAGCGACGCCAAAATTTGTTGCTCGTGTCGCCCTTAATCTCAGACACG
GGCGAGGAAGATGTGCAAGAAGCAGAGGTGGAAGTAACGGTTGCGTATTT
TCGCGCAGGATACGATCCCAGCGACTATTCGAGCGAAGGAGAGTGGAAAG
GGCGGGAACTTATAGAGATGTCGGCTGCCATAAAGTGTCCTAGCATATCC
CACCATCTGGCCGGCACCAAGAAAGTCCAGGAAGCTCTCTGTCGGCCGGG
GGTGCTCGAACGTTTCCTTAAAGATGCCGAAGATGTGGATGCCATCCGGA
ACTGTTTTGTTGGGTTGTACGGACTTGACCCGGAATGTGAAGGCGCAACG
GCGGCGGTGGCTGCGGCCTGTAATAGTCCTCAACACTTTGTGCTGAAGCC
TCAACGTGAAGGGGGCGGGCATAACTTGTATGACCAGGATCTTGTGGAGG
CATTGTCACAGATGACAGCAGAGGAGCGAGCTGCCTACATACTGATGGAG
AAAATTCGACCTCCGCCATTTGAAGCATTTTTCCTTCGAGACTGCAGTGT
CCTTCGCGGACTTGCAGTTCTCGAGTTGGGTGTTTACGGAGTGTACTTGG
GTGACGGTGAAGGTAAACGCGTCATTCTCAACGAATCTGTCGGCCATCTG
TTGAGGACAAAGCTGGCTAGCAGCCACGAAGGCGGAGTCGCCGCAGGATT
TGCCGTCCTCAGTAGTCCTTTGCTAGTCGGAGGAGGTGAAGATAGTGGCA
TATTGAGCAAAAAGTATTTTTCGACATTGCGAGAGTTCACCATGTCGGCG
CGTGTCTGGCGAAGACAAAGATTTTGGAAAATAGGTGCAACGGGCATAGC
CTTTTGGGGAGTCGGGTTGTTTTTAACATACATTGCTGTAAGCAAGAGAA
GTGGAAAGTTGCAATAG
back to top
Synonyms
Publications