rna88, rna88 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna88
Unique Name	rna88
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2214
Alignment location	CM002455.1:240093..243011 -

Link to JBrowse

Properties


Property Name	Value
Product	Pentatricopeptide repeat containing protein
Orig transcript id	gnl\|cribi\|Naga_100033g13.8388.mrna
Orig protein id	gnl\|cribi\|Naga_100033g13.8388
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:240093..243011 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100033g13	gene86	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30549.1	cds88	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna88	rna88-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:240093..243011-
coding sequence from alignment at CM002455.1:240093..243011-

mRNA sequence

>rna88 ID=rna88|Name=rna88|organism=Nannochloropsis gaditana|type=mRNA|length=2214bp
ATGGTACGTTTGGAAAAGGAACGCATTCCAGTGCACCCTTTAGTCATCAC
GAGGATCCAGTCATCGGAAGCCGACCCAACTTTTGACAAAATCTTCCTTG
ACAAATTATGCATGCATCCCGCGCACTTGTCAGTCTGGTATTCATTTTCA
TATCAAAAACTTTCCCCCTGGAATTTTCTCCCAATACGTGCGGATAAATT
CAGAATGACGGTCAATAAGCACAGGCCGGGGCGGGCGAGCCTTTCAACGG
CTTTCGCTAAAATTTCAAAAATGAAGCTTGAGGCAGACTACCATGGGTGT
TGCGTGGATGAAAATATCACGAGTATGGAAGCGTTGAAGATTACCTTTGC
AATGCCGTTTTATGTTCGGAAGCATGTACCACCGGGTAGCATCGCGGCCA
GCGGTGGTTTCTTTGAAGGAAGCCTGTCCCATCAGCAAATCCGCTTGTTG
CTCGGGTTATACGCAGGTTACTGCTCTATGATGTTCAGCAGAGCTGCGAT
GGATGTGGCCATCCCTCTCATTCTTCAAGATGAGGCGACAGGCATTGACC
CGCGGGATATTGGTACTCTCTTAACCCTTTGCTCTTTTTTCTACTTGTTT
GGCAAGATCAGCATGGGCTACAGTGTGGACCAAGTCGGGCCACGCTTAGT
ATTTTTGGGTCTGGCCTCTTTCGCATCAGCAGGATTGACTTGCCTGATCT
CCTTTAGCCATACAGCTGCGCGGATGACTTTTCTCATGTGTGCCCTGTGT
GTCGCTCAGTCGTCCGGGTGGGCGGCCATCACAAGCATGATCTCTCTCTG
GCTTCAGCCCTCTCAGTATGCTATGGCTTTCGGCATTCTCTCCACCTCTT
CGCGCATGGGAGACCTTGCATCGAAAGTTGCTTTGGGACGTGCCGTCGCG
TCGGGGTGGGACTGGCGATCTCTATTCATTCTAGCAGCAGCACTGCAGCT
GTTCGTCGCGTTTTTGAACCTGTTCCTCCTACCGAAGGCCACCTCCATCG
CCTCTTTCGCCTCCGCCGCGCCCTCCATGTCGTTTCTTTCCACCACCAGC
AGTCTGATTGCCGAAGACAAGAAACAAACTCTGTGTGCGTCGCCACAGCA
ACGGCGGCCCTCCACGCTGGGTTTTCACGGCGCGGGCTATATTCCTGACC
GGGAGGAGCAACTTGTGTTGCTAGATACCTCCGCGTCCTCGCCGCCTCGC
TCGCTCTCCACCTACGTATCTGCCTCACTGTCTCAAATATGGGCCATAGC
CCGCACTCCCCGGTTCAGGTCCATGGCACTGGCCATCGCCGCATTGCACA
TCGTCATGGAGTTTGATAAGTACATCCCCCTCTACTTGCACCGCTCCCTG
GGCCTTTCGCCTGGATTGGCCGCACAAGGCGCCGCCCTCTACCCTTTGTC
TCAGCTTCTAGCACTGGGATTGGCAGGCGTCGCGTATGATCGGTTAAAAC
CCCGCGGGAGACTTCTCACCGTCGGGGCGCTGTGTTTGGGGGTGGCCGGG
TTTTTCGCCCTCCAAGTCCTCCTCCTTCTCACACCATCAGCCTTGCTACC
GCGCCAAAACATCTTCTTGCTCCTGATCTTTTGCGCCGGATTCTGTGTAG
CGGTCCCTTATTACCTGCCTCCGTCCATTTACTTGGCGGAGGTGGGCGGG
AAAGGCAAGTGCGGCACACTGTCAGGTGTCCTTGATGCGAGCGGAGGGGT
CACGTCCATGGGCTTCCACTACGGTGTGGGGTACCTGGTCGCTAGGGATC
GGTGGGGCCTGCTCTTGGGTGTCGTGTCGGTCTGCGCCCTGGTGGGTTTC
CGAGCCATGACGACCTTCCACGAGGTGTCCCTTGCCCTGGACGGCTCTCG
GGCCCCAAGGCAAAAGAAGAACGACTTGCTTCCAGAGACGCTCCCAACCC
TCCCGACTGCGCGAACCACCACCTCCTACATGTCCCGGACGAATAAAATT
GGCGGCAACGAAAGCAAAGCCAATGTCGGCGCCAGCCATCTTTACAACCA
TCAGCCACCCTTGCAGTACCCGCTCAAGGGGCCTATTCAGGCAAGCGTCT
TGTCACGGCTACCTCTCATCGGCCATCTCATTCCTCGTGCACGAGGAATG
AGCTGGATGTCGATGAAGGAGGGTAAACCTGCAGTGGGAGCAATGATGAA
TAGGAAGAAGGAGAGGAAGGACAGCAACGACGGGAATTACCAGAAGCATC
TTGCTGCTGTCTGA

protein sequence of rna88

>rna88-protein ID=rna88-protein|Name=rna88|organism=Nannochloropsis gaditana|type=polypeptide|length=972bp
MRQCSRLGVVGRTKCRKRLLPSAWKGRARPSLPSVPHPSLGFLRPFHANP
VHLLVAAPIASKVLTTSYGSDAEDDRAKKDFLAFIEPEDQDVAIMVMRDA
YNAAAKGQETVNKDAKTPGEDALEPFILRSLPSSSSLEFFSSSRSSALAT
FCNALLCGLARANDPALLDKAFAYLGKMRTRLPQEFAERALPSNAARSHM
IRTCAILVRGAGLFRHSDTGERLAAPSPSEGPSFNSPVKAASGGSKYIRL
SEMLFEEYLHSSMEAVRREPNNKALFSEYLYHTPRLLSSMIYIYCQAREN
RKAVALFNRLRDQTFPCSIVPDGLAVAGVIRAQAVSQGPLEAWEHLQELR
RGNPPIDVATFFGLYKTFAFCILSHAPSGGRPGDALHALAHRVVEDMRAH
GIRPSATQWHIFMKVETLFADWERIQQYMAWMKEDGWSYGSYEYGMLIEA
LGVRKQLGLIAQVRAKMEKEGIPVTYVVYLSIIQAYRRAYDVRSAEAAFR
DWQREPWRDEEEVKHRAEPVEIVTTMMKIYAKGGLPEKAWALFVQYREGD
AIGGEEPGEGKKKRRPDHVMYSVAVRVASLLGGIPMVEKVYEEYQQDKAR
GFHGGGGELGQGGAGSLGREGGLGVKKEQSSGQRAGADRGLQSRRKLKDN
MSLSMLAAYVDAKEWGRAYEFFDTLQAADEKEGTFAPIRAYNVMIYGLKR
ANRHEEARTLAEQAKAKGIAFDRATQKILASTAGAEDLWAPPPHVYVLGG
EKYRQERKIKSVQGNIEGRRDLPVGAVVLDLHGLSVDEARTLLAREFEAM
REKFDAEMKEGGEEAGENEKCARVNEGNPEEGRDYAKGSEDTVRVHDAHR
DGLQDLLLITGFRRRIGPGQGAVLLANEDMPIYQKGEGDNVNALQETARD
FLGDRGIYWSSVPSNPGRLLVQSDSLRQYFERQRREESKVKFLRLTLLRY
IPVTSLLALLFVVPKDIAGVPL

mRNA from alignment at CM002455.1:240093..243011-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna88 ID=rna88|Name=rna88|organism=Nannochloropsis gaditana|type=mRNA|length=2919bp|location=Sequence derived from alignment at CM002455.1:240093..243011- (Nannochloropsis gaditana)
ATGAGACAGTGTTCGCGATTGGGCGTTGTCGGCAGAACCAAATGTAGAAA
GCGGCTGTTGCCCTCGGCATGGAAAGGGAGAGCAAGACCATCATTACCAT
CCGTGCCACATCCATCGCTGGGGTTTCTACGACCTTTTCACGCCAATCCT
GTGCATCTCTTGGTGGCCGCGCCGATCGCTTCGAAAGTTTTGACCACAAG
TTATGGTTCAGACGCGGAGGATGATCGGGCAAAGAAAGACTTTCTGGCAT
TTATAGAGCCAGAGGACCAAGACGTTGCAATTATGGTAATGCGTGATGCG
TATAACGCGGCGGCCAAAGGGCAAGAGACGGTAAATAAGGACGCGAAAAC
ACCCGGAGAGGACGCCCTTGAACCATTCATCTTGCGTTCGCTGCCTTCGT
CTTCCTCTCTGGAATTTTTTTCGTCTTCACGTTCTTCAGCTCTCGCCACT
TTCTGTAACGCCCTGCTGTGCGGGTTAGCGCGGGCTAACGACCCCGCCCT
TCTGGACAAAGCGTTTGCGTACCTGGGAAAGATGCGAACCCGTCTCCCTC
AAGAATTTGCCGAAAGGGCTTTGCCGTCAAATGCGGCCCGGAGTCACATG
ATACGGACGTGCGCCATATTAGTTCGAGGCGCAGGGCTTTTCCGACACTC
CGACACGGGTGAACGACTCGCTGCACCCTCTCCTTCGGAAGGTCCGTCTT
TCAATTCTCCCGTCAAAGCAGCATCCGGAGGCAGTAAATATATCAGGTTG
AGCGAAATGCTCTTTGAAGAATACTTGCACTCCTCCATGGAAGCCGTACG
TCGCGAGCCCAACAACAAGGCCCTTTTTTCCGAATATCTCTACCATACTC
CCCGACTACTAAGCTCCATGATATACATCTATTGTCAAGCCCGGGAAAAT
CGGAAGGCTGTGGCTCTCTTCAACCGGTTGCGGGACCAGACGTTCCCATG
TTCGATCGTCCCGGATGGCTTGGCCGTCGCTGGTGTCATCCGGGCGCAAG
CTGTCTCCCAGGGGCCGCTCGAGGCCTGGGAGCACCTGCAAGAGTTAAGG
AGAGGAAACCCGCCCATTGACGTGGCTACGTTCTTTGGGTTGTACAAAAC
CTTTGCCTTCTGCATCCTCAGCCATGCGCCCTCGGGGGGACGGCCCGGGG
ACGCGCTTCACGCATTGGCCCATCGGGTCGTGGAGGACATGCGGGCCCAT
GGGATCAGGCCGTCGGCGACGCAGTGGCACATATTCATGAAGGTCGAGAC
GCTGTTCGCGGACTGGGAGCGTATACAGCAGTACATGGCGTGGATGAAGG
AGGACGGCTGGTCGTACGGAAGTTACGAGTATGGCATGTTGATCGAGGCG
TTGGGAGTGCGGAAGCAACTGGGATTGATTGCGCAGGTCCGGGCCAAGAT
GGAGAAAGAAGGGATACCCGTCACGTACGTGGTGTACCTGAGCATCATTC
AAGCATATCGGAGAGCCTACGACGTGCGGAGCGCGGAAGCTGCTTTCAGG
GATTGGCAGAGGGAGCCCTGGCGGGATGAGGAGGAAGTCAAGCATCGCGC
CGAGCCCGTGGAGATCGTCACCACGATGATGAAAATATATGCAAAGGGAG
GCCTGCCCGAGAAAGCGTGGGCGCTGTTCGTGCAGTACCGGGAGGGAGAC
GCCATCGGCGGCGAGGAGCCCGGGGAGGGGAAAAAAAAGCGGCGCCCGGA
CCACGTGATGTATTCGGTGGCCGTGCGTGTGGCGTCACTGTTGGGGGGGA
TTCCGATGGTGGAAAAGGTGTACGAGGAGTACCAACAAGATAAAGCTCGC
GGTTTCCATGGGGGGGGTGGGGAGCTGGGCCAGGGCGGGGCGGGGAGCCT
GGGGAGGGAGGGAGGCCTAGGGGTAAAGAAGGAGCAGTCTTCAGGCCAAC
GAGCAGGGGCGGACCGAGGGCTGCAAAGCCGACGGAAGCTCAAAGACAAC
ATGTCGCTCAGCATGCTCGCCGCCTACGTGGACGCCAAAGAATGGGGGAG
GGCCTATGAGTTCTTTGACACGCTACAGGCCGCGGATGAAAAGGAGGGCA
CCTTTGCACCCATACGCGCGTACAATGTCATGATTTATGGTTTGAAACGG
GCAAACCGTCACGAGGAAGCACGGACGCTGGCCGAACAAGCCAAGGCGAA
AGGTATCGCCTTCGATAGGGCCACGCAGAAGATATTGGCGAGCACGGCGG
GGGCGGAGGACTTGTGGGCGCCCCCTCCACATGTTTACGTGCTGGGGGGA
GAGAAGTACAGGCAGGAAAGGAAAATAAAGAGTGTACAGGGAAACATCGA
AGGACGGCGAGACCTGCCGGTGGGCGCAGTAGTGTTGGACCTGCACGGGC
TGAGCGTCGATGAAGCCCGGACCTTGCTAGCTAGGGAGTTCGAGGCCATG
CGGGAGAAATTCGATGCGGAAATGAAAGAAGGCGGGGAAGAAGCGGGAGA
AAATGAGAAGTGTGCACGTGTGAATGAAGGAAATCCTGAAGAAGGGAGGG
ATTACGCGAAAGGGTCCGAGGATACTGTGCGCGTCCACGACGCTCATCGG
GACGGTTTGCAAGACCTACTTCTCATCACCGGGTTTCGGCGACGGATCGG
TCCCGGGCAGGGGGCGGTCCTCCTGGCAAATGAAGATATGCCTATCTACC
AAAAAGGGGAAGGAGACAACGTGAACGCTTTACAAGAAACTGCCCGGGAC
TTTCTGGGTGACCGCGGAATCTACTGGTCTTCCGTGCCCTCGAATCCGGG
CCGTCTGCTTGTACAAAGCGACTCCCTTCGACAATATTTCGAAAGGCAAC
GTAGGGAGGAATCCAAGGTGAAGTTCTTGCGCTTGACTTTGTTGAGGTAC
ATTCCTGTGACATCACTGTTGGCATTGCTATTTGTAGTGCCCAAGGACAT
AGCAGGGGTACCATTGTAA

Coding sequence (CDS) from alignment at CM002455.1:240093..243011-

>rna88 ID=rna88|Name=rna88|organism=Nannochloropsis gaditana|type=CDS|length=2919bp|location=Sequence derived from alignment at CM002455.1:240093..243011- (Nannochloropsis gaditana)
ATGAGACAGTGTTCGCGATTGGGCGTTGTCGGCAGAACCAAATGTAGAAA
GCGGCTGTTGCCCTCGGCATGGAAAGGGAGAGCAAGACCATCATTACCAT
CCGTGCCACATCCATCGCTGGGGTTTCTACGACCTTTTCACGCCAATCCT
GTGCATCTCTTGGTGGCCGCGCCGATCGCTTCGAAAGTTTTGACCACAAG
TTATGGTTCAGACGCGGAGGATGATCGGGCAAAGAAAGACTTTCTGGCAT
TTATAGAGCCAGAGGACCAAGACGTTGCAATTATGGTAATGCGTGATGCG
TATAACGCGGCGGCCAAAGGGCAAGAGACGGTAAATAAGGACGCGAAAAC
ACCCGGAGAGGACGCCCTTGAACCATTCATCTTGCGTTCGCTGCCTTCGT
CTTCCTCTCTGGAATTTTTTTCGTCTTCACGTTCTTCAGCTCTCGCCACT
TTCTGTAACGCCCTGCTGTGCGGGTTAGCGCGGGCTAACGACCCCGCCCT
TCTGGACAAAGCGTTTGCGTACCTGGGAAAGATGCGAACCCGTCTCCCTC
AAGAATTTGCCGAAAGGGCTTTGCCGTCAAATGCGGCCCGGAGTCACATG
ATACGGACGTGCGCCATATTAGTTCGAGGCGCAGGGCTTTTCCGACACTC
CGACACGGGTGAACGACTCGCTGCACCCTCTCCTTCGGAAGGTCCGTCTT
TCAATTCTCCCGTCAAAGCAGCATCCGGAGGCAGTAAATATATCAGGTTG
AGCGAAATGCTCTTTGAAGAATACTTGCACTCCTCCATGGAAGCCGTACG
TCGCGAGCCCAACAACAAGGCCCTTTTTTCCGAATATCTCTACCATACTC
CCCGACTACTAAGCTCCATGATATACATCTATTGTCAAGCCCGGGAAAAT
CGGAAGGCTGTGGCTCTCTTCAACCGGTTGCGGGACCAGACGTTCCCATG
TTCGATCGTCCCGGATGGCTTGGCCGTCGCTGGTGTCATCCGGGCGCAAG
CTGTCTCCCAGGGGCCGCTCGAGGCCTGGGAGCACCTGCAAGAGTTAAGG
AGAGGAAACCCGCCCATTGACGTGGCTACGTTCTTTGGGTTGTACAAAAC
CTTTGCCTTCTGCATCCTCAGCCATGCGCCCTCGGGGGGACGGCCCGGGG
ACGCGCTTCACGCATTGGCCCATCGGGTCGTGGAGGACATGCGGGCCCAT
GGGATCAGGCCGTCGGCGACGCAGTGGCACATATTCATGAAGGTCGAGAC
GCTGTTCGCGGACTGGGAGCGTATACAGCAGTACATGGCGTGGATGAAGG
AGGACGGCTGGTCGTACGGAAGTTACGAGTATGGCATGTTGATCGAGGCG
TTGGGAGTGCGGAAGCAACTGGGATTGATTGCGCAGGTCCGGGCCAAGAT
GGAGAAAGAAGGGATACCCGTCACGTACGTGGTGTACCTGAGCATCATTC
AAGCATATCGGAGAGCCTACGACGTGCGGAGCGCGGAAGCTGCTTTCAGG
GATTGGCAGAGGGAGCCCTGGCGGGATGAGGAGGAAGTCAAGCATCGCGC
CGAGCCCGTGGAGATCGTCACCACGATGATGAAAATATATGCAAAGGGAG
GCCTGCCCGAGAAAGCGTGGGCGCTGTTCGTGCAGTACCGGGAGGGAGAC
GCCATCGGCGGCGAGGAGCCCGGGGAGGGGAAAAAAAAGCGGCGCCCGGA
CCACGTGATGTATTCGGTGGCCGTGCGTGTGGCGTCACTGTTGGGGGGGA
TTCCGATGGTGGAAAAGGTGTACGAGGAGTACCAACAAGATAAAGCTCGC
GGTTTCCATGGGGGGGGTGGGGAGCTGGGCCAGGGCGGGGCGGGGAGCCT
GGGGAGGGAGGGAGGCCTAGGGGTAAAGAAGGAGCAGTCTTCAGGCCAAC
GAGCAGGGGCGGACCGAGGGCTGCAAAGCCGACGGAAGCTCAAAGACAAC
ATGTCGCTCAGCATGCTCGCCGCCTACGTGGACGCCAAAGAATGGGGGAG
GGCCTATGAGTTCTTTGACACGCTACAGGCCGCGGATGAAAAGGAGGGCA
CCTTTGCACCCATACGCGCGTACAATGTCATGATTTATGGTTTGAAACGG
GCAAACCGTCACGAGGAAGCACGGACGCTGGCCGAACAAGCCAAGGCGAA
AGGTATCGCCTTCGATAGGGCCACGCAGAAGATATTGGCGAGCACGGCGG
GGGCGGAGGACTTGTGGGCGCCCCCTCCACATGTTTACGTGCTGGGGGGA
GAGAAGTACAGGCAGGAAAGGAAAATAAAGAGTGTACAGGGAAACATCGA
AGGACGGCGAGACCTGCCGGTGGGCGCAGTAGTGTTGGACCTGCACGGGC
TGAGCGTCGATGAAGCCCGGACCTTGCTAGCTAGGGAGTTCGAGGCCATG
CGGGAGAAATTCGATGCGGAAATGAAAGAAGGCGGGGAAGAAGCGGGAGA
AAATGAGAAGTGTGCACGTGTGAATGAAGGAAATCCTGAAGAAGGGAGGG
ATTACGCGAAAGGGTCCGAGGATACTGTGCGCGTCCACGACGCTCATCGG
GACGGTTTGCAAGACCTACTTCTCATCACCGGGTTTCGGCGACGGATCGG
TCCCGGGCAGGGGGCGGTCCTCCTGGCAAATGAAGATATGCCTATCTACC
AAAAAGGGGAAGGAGACAACGTGAACGCTTTACAAGAAACTGCCCGGGAC
TTTCTGGGTGACCGCGGAATCTACTGGTCTTCCGTGCCCTCGAATCCGGG
CCGTCTGCTTGTACAAAGCGACTCCCTTCGACAATATTTCGAAAGGCAAC
GTAGGGAGGAATCCAAGGTGAAGTTCTTGCGCTTGACTTTGTTGAGGTAC
ATTCCTGTGACATCACTGTTGGCATTGCTATTTGTAGTGCCCAAGGACAT
AGCAGGGGTACCATTGTAA

Synonyms

Publications