rna8787, rna8787 (mRNA) Nannochloropsis gaditana

Overview
Namerna8787
Unique Namerna8787
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2260
Alignment locationKK037250.1:159858..161668 -

Link to JBrowse

Properties
Property NameValue
ProductNicotinamide N-methyltransferase, putative
Orig transcript idgnl|cribi|Naga_100070g12.4231.mrna
Orig protein idgnl|cribi|Naga_100070g12.4231
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:159858..161668 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100070g12gene8518Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8787rna8787-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21917.1cds8757Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8787 ID=rna8787|Name=rna8787|organism=Nannochloropsis gaditana|type=mRNA|length=2260bp
GAGTAAGTACTCACTCAGACTGGAAAAGCATCAGCCAAGCAAGTGGCATG
TCAGAAGCAGTCCTCAAGAATATTGAGAAAGAACTGCCCAAACTACAGGC
TGAGCTAGCAAGTATAAAAGAAGCTGCACCCAAATCTGAAGCTTTGGTGG
ATCTTATCGATCATATTGTCAAAACGCACGAGCCATTTTACGAAAGTGCC
ATTCCCAAAAACCCCTGGCTCAAACCGGCCACCGGCCCCTGCTGCTGTTT
GCAGTAAAACGAAAGACAAAGTCGATAATATTCACCAAGGCATAACAATC
CAAACTGAAACAATAATACGAGCATCAAATCAAAGAGGAGGGAATTCCGA
TCTCGGTCTATCGACAAGCCGTCAAGGAAAGCTCCGTTTTGTGAGAATTT
CAAGCGGCAGAGCTACATCTTGGGTCTCGCGGACATCCTCTGGAATAAAT
CTGTGCGCATGACTACATAATGTAAAGAAAACGACAAATTAACGCCTCAA
ACCGAGTCATCATGGCATTGAAGCCCACGCTTGACTCTCTGCCTTCTATC
CTTTTGTCCCGTATCCTGCGAGAGACTTCTTTTTCCGCGAAAACCCGGTC
GCTTAACTTCAACGCTCAAGCTAAGCTCAAGTCTTGCAAAGCTGCATGCT
CCCCAAAGAATACTTTTCCTTCCTCATCAATCGCGTGTAAGCCTCGTTGA
CATTACAACATCATCATAATCTAACAAATGGAAGGTGAGATAACCCGAAA
ATTTCTTCAAGCCTTTGTCTGGCCTCGCCTTAGTAGATGCTTCCCGGTAA
AGGCTTCACAGCTGTGCAGTGTACTACGTGTTCATGGTCTTCTTTAAAGT
TGTACTGCATACATGCGACTCGTTTTTTGGGGTATTCTTCACACTCTGCT
CCATTAAACTACGGTACGATACACTAGTTGCTAGGGCTGGCACCCATTTG
CATTTTCTGGCATTATGTGGATTTTGATCGTGATCATAAGTGCACTGAGC
GGGGCGGCGTTTCTGTACTGGCTACGAAGTCGCCTTCAATGCGGGATTCA
GCGCCGTGGTGATGATGCTGACATGCTATCGTTTCAAGCTGCGTGCTCCC
ACGCTCTGAGTGGCGAATGCTTTTCGTGGTATCGACAGTCTCGTACATCA
TCGCAATCATCATTTATTACTGGGAGAAGAAGTGGTGGAGTACGCCGATT
GATCGGACATCAGATTGCAGTCGAGGAGGGCATTGCGCTGTCTCGCAGGG
GCACGGATTCTTCCCGGCTGCAACTCATGTTAATGGATCGGGATTTCTCA
AGCGAAGACTACGAAGTTTTATCACGGCTGGATGAGGATGAACAGGACGC
TTGCCACTTGTTGGGAGCAACGGATGCAGAGCTGGAACGACTACCCACGT
ACATTGTGGATACAGAAACTAAGCTAAACAAATGCTTCATATGTTTAAAC
GACTTTTTGAAAGGCGAAGTTGTTAGAATCTTGCCATGTCTGCATCAATT
TCATCAATCTGAGTGCTGTGATCCGTGGTTGAGACGGAAGATGGAGTGCC
CAGTGTGCAAATTCAGGCTATAGCTCGTGCACTTTAATTGCCACTTGCGC
AACTCTCGGCTACGTATGTAGCTGTTTAAGAAAAGCCTGATGCGTGCAGC
AAAGAACCCTCTGTAAAATATATCGAAATGAAATAGCATATGTAAGTAAG
ACATGTATATCGACTATGGCCAATTTGACATTTGATCAAAGTAAAGATTG
GTTATACATATATATATGTATATCTTATATGTATATATAATCATATATAT
AACAAAGCAGTCAGACAGCGAGTTTTTGGGGAGGCTTTAAATATAATCAC
CAGCCGTTTTAGCAAACACTTCCGCCTTCAGCTCTTTGGGCCTTCTCACC
AACCGCTCTACTTCAAGTCGAATGACATCTCTCATTCCTACGCCCTGTTA
TTATTTGCATTGTCGTCTCGCATAATCTCGCGTTTAAAGAAAGGATTTTG
TGTAAGAGACCAGATTTCACACTCTCCTTTCAAGATGTTACTCATGCTCG
CGTTTGCATCGCTGTTTCGACGGCAGCGGTGCTATCCCTCCAACTTTTGG
ATGACTTTCGTAGCCCCTTAACCCATTTTACAACACTCTTCAGCTCAGAA
TCAAAGTTAAGGGAGCCTCGATCAAACTTCATAGGCAGCATGTACCGAAC
CAGAACATAAGTTATACGGAGGACGAGGTGGGACGTGCAGAAAGTTCGAC
AGAATAACGC
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protein sequence of rna8787

>rna8787-protein ID=rna8787-protein|Name=rna8787|organism=Nannochloropsis gaditana|type=polypeptide|length=278bp
MQGGTDLQPGGCSSVQRSHGPRHAPSQLTRDFTQMTRENEETTVTLDICH
HTLVLHQSRRSYNCGSTLWSAGLVLARYLEQEKGLFNKSKHCLRVLELGA
GLGLAGIVCALQENCAQVTLTDLGSVLPYLQKNAQYIPSMVLQDGKREID
LQVKEYVWGQAPEDCGLQPPYDLILGADCIYDIAQVEPFLQSLSAVSGPR
STILLGNEERDKALQEHFVKELGKLFSIKPIKRKRLSVLEGFHELIEVWV
CRRRRYKGEDELAIHHEAEKESNTKGHK
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mRNA from alignment at KK037250.1:159858..161668-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8787 ID=rna8787|Name=rna8787|organism=Nannochloropsis gaditana|type=mRNA|length=1811bp|location=Sequence derived from alignment at KK037250.1:159858..161668- (Nannochloropsis gaditana)
ATGCAGGGAGGGACAGACCTGCAGCCAGGAGGTTGCTCGAGCGTACAACG GAGTCACGGTCCTCGCCACGCTCCATCCCAACTCACACGAGACTTCACGC AGATGACCAGGGAAAACGAGGAGACTACGGTCACGCTAGATATCTGCCAC CACACGTTGGTCCTACATCAGAGCCGCAGATCATACAACTGTGGGTCGAC GCTGTGGAGTGCAGGCCTAGTGCTAGCTCGGTATGGCTGAATATTGCTTG AACGTACGCGTGGGTGGTTTTTTTCATTAATCCCCGTTGCCTAATCTGGA TAACAACATCCATAAAAGGTACTTGGAGCAAGAAAAGGGTCTCTTCAACA AAAGCAAGCATTGTCTGCGAGTTTTGGAGTTGGGTGGTAGGTATACTTGC ATAGTAATTTCCACTTGCTATTTTTTAATGTGCTCCTGCATTTCGCTGAC ATTTCTCACTCTTCCTTTTCTCAGCCGGTTTAGGTCTGGCAGGCATCGTT TGCGCGTTACAAGAGAACTGTGCACAGGTTACTTTGACTGATTTGGGTTC GGTCCTCCCTTACCTGCAGAAGAATGCTCAATACATCCCCAGCATGGTAT TACAGGACGGTGCGTGGCTGCAGGCAAGAAAATTCACATTCAATTTCGTG CAGAAGATGTCCGTGTTGCTCTCTTCCGTAGAATATCTTGCACAACTCGC TTTGAGGCGACTTGTCGGTGCGCGATCAGAAATTTAGGTACTGGCTTGAT TGCCTTCTCCTCACTACCGACACAGGAAAACGTGAAATTGACTTGCAAGT GAAAGAGTATGTATGGGGCCAAGCTCCCGAAGATTGTGGCCTTCAGCCAC CTTACGATTTAATTTTGGGAGCTGATTGTATTTACGACATTGCTCAAGTT GAACCTTTCCTTCAGTCTCTCAGGTACGAAGTCCCGCCTTCGAAATTCAC TTTACGCTCGATTACAAATGCCGTTTTTCGGTGATTGAAAGACCCTTGAT GTCTTGAGCGGCTTTCTCACAGCGTCACCGATATGTTACAAGCGCTGTGT CAGGCCCACGGAGCACAATCTTACTAGGGAATGAAGAGCGAGACAAGGCG CTGCAAGAACACTTCGTGAAAGAGCTTGGAAAGCTTTTTTCAATAAAGCC TATCAAACGCAAGAGACTGAGCGTATTGGAGGGTTTTCATGAGCTGATCG AAGTATGGGTGTGTAGAAGGAGACGATATAAAGGAGAGGATGAGCTGGCA ATACATCATGAGGCGGAGAAGGAGAGCAATACCAAAGGCCACAAATAAAC GCGTGTATAGTAGAAAGCAAGTTAAATGACAAAGTATGGATGACCCAGCT GGCAACACAGCTTTGGAATAAAGCGAATGCGTTATTCTGTCGAACTTTCT GCACGTCCCACCTCGTCCTCCGTATAACTTATGTTCTGGTTCGGTACATG CTGCCTATGAAGTTTGATCGAGGCTCCCTTAACTTTGATTCTGAGCTGAA GAGTGTTGTAAAATGGGTTAAGGGGCTACGAAAGTCATCCAAAAGTTGGA GGGATAGCACCGCTGCCGTCGAAACAGCGATGCAAACGCGAGCATGAGTA ACATCTTGAAAGGAGAGTGTGAAATCTGGTCTCTTACACAAAATCCTTTC TTTAAACGCGAGATTATGCGAGACGACAATGCAAATAATAACAGGGCGTA GGAATGAGAGATGTCATTCGACTTGAAGTAGAGCGGTTGGTGAGAAGGCC CAAAGAGCTGAAGGCGGAAGTGTTTGCTAAAACGGCTGGTGATTATATTT AAAGCCTCCCC
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Coding sequence (CDS) from alignment at KK037250.1:159858..161668-

>rna8787 ID=rna8787|Name=rna8787|organism=Nannochloropsis gaditana|type=CDS|length=4185bp|location=Sequence derived from alignment at KK037250.1:159858..161668- (Nannochloropsis gaditana)
CGCTGTGTCAGGCCCACGGAGCACAATCTTACTAGGGAATGAAGAGCGAG
ACAAGGCGCTGCAAGAACACTTCGTGAAAGAGCTTGGAAAGCTTTTTTCA
ATAAAGCCTATCAAACGCAAGAGACTGAGCGTATTGGAGGGTTTTCATGA
GCTGATCGAAGTATGGGTGTGTAGAAGGAGACGATATAAAGGAGAGGATG
AGCTGGCAATACATCATGAGGCGGAGAAGGAGAGCAATACCAAAGGCCAC
AAATAAGAAAACGTGAAATTGACTTGCAAGTGAAAGAGTATGTATGGGGC
CAAGCTCCCGAAGATTGTGGCCTTCAGCCACCTTACGATTTAATTTTGGG
AGCTGATTGTATTTACGACATTGCTCAAGTTGAACCTTTCCTTCAGTCTC
TCAGCCGGTTTAGGTCTGGCAGGCATCGTTTGCGCGTTACAAGAGAACTG
TGCACAGGTTACTTTGACTGATTTGGGTTCGGTCCTCCCTTACCTGCAGA
AGAATGCTCAATACATCCCCAGCATGGTATTACAGGACGGTACTTGGAGC
AAGAAAAGGGTCTCTTCAACAAAAGCAAGCATTGTCTGCGAGTTTTGGAG
TTGGGTGATGCAGGGAGGGACAGACCTGCAGCCAGGAGGTTGCTCGAGCG
TACAACGGAGTCACGGTCCTCGCCACGCTCCATCCCAACTCACACGAGAC
TTCACGCAGATGACCAGGGAAAACGAGGAGACTACGGTCACGCTAGATAT
CTGCCACCACACGTTGGTCCTACATCAGAGCCGCAGATCATACAACTGTG
GGTCGACGCTGTGGAGTGCAGGCCTAGTGCTAGCTCGCGCTGTGTCAGGC
CCACGGAGCACAATCTTACTAGGGAATGAAGAGCGAGACAAGGCGCTGCA
AGAACACTTCGTGAAAGAGCTTGGAAAGCTTTTTTCAATAAAGCCTATCA
AACGCAAGAGACTGAGCGTATTGGAGGGTTTTCATGAGCTGATCGAAGTA
TGGGTGTGTAGAAGGAGACGATATAAAGGAGAGGATGAGCTGGCAATACA
TCATGAGGCGGAGAAGGAGAGCAATACCAAAGGCCACAAATAAGAAAACG
TGAAATTGACTTGCAAGTGAAAGAGTATGTATGGGGCCAAGCTCCCGAAG
ATTGTGGCCTTCAGCCACCTTACGATTTAATTTTGGGAGCTGATTGTATT
TACGACATTGCTCAAGTTGAACCTTTCCTTCAGTCTCTCAGCCGGTTTAG
GTCTGGCAGGCATCGTTTGCGCGTTACAAGAGAACTGTGCACAGGTTACT
TTGACTGATTTGGGTTCGGTCCTCCCTTACCTGCAGAAGAATGCTCAATA
CATCCCCAGCATGGTATTACAGGACGGTACTTGGAGCAAGAAAAGGGTCT
CTTCAACAAAAGCAAGCATTGTCTGCGAGTTTTGGAGTTGGGTGATGCAG
GGAGGGACAGACCTGCAGCCAGGAGGTTGCTCGAGCGTACAACGGAGTCA
CGGTCCTCGCCACGCTCCATCCCAACTCACACGAGACTTCACGCAGATGA
CCAGGGAAAACGAGGAGACTACGGTCACGCTAGATATCTGCCACCACACG
TTGGTCCTACATCAGAGCCGCAGATCATACAACTGTGGGTCGACGCTGTG
GAGTGCAGGCCTAGTGCTAGCTCGCGCTGTGTCAGGCCCACGGAGCACAA
TCTTACTAGGGAATGAAGAGCGAGACAAGGCGCTGCAAGAACACTTCGTG
AAAGAGCTTGGAAAGCTTTTTTCAATAAAGCCTATCAAACGCAAGAGACT
GAGCGTATTGGAGGGTTTTCATGAGCTGATCGAAGTATGGGTGTGTAGAA
GGAGACGATATAAAGGAGAGGATGAGCTGGCAATACATCATGAGGCGGAG
AAGGAGAGCAATACCAAAGGCCACAAATAAGAAAACGTGAAATTGACTTG
CAAGTGAAAGAGTATGTATGGGGCCAAGCTCCCGAAGATTGTGGCCTTCA
GCCACCTTACGATTTAATTTTGGGAGCTGATTGTATTTACGACATTGCTC
AAGTTGAACCTTTCCTTCAGTCTCTCAGCCGGTTTAGGTCTGGCAGGCAT
CGTTTGCGCGTTACAAGAGAACTGTGCACAGGTTACTTTGACTGATTTGG
GTTCGGTCCTCCCTTACCTGCAGAAGAATGCTCAATACATCCCCAGCATG
GTATTACAGGACGGTACTTGGAGCAAGAAAAGGGTCTCTTCAACAAAAGC
AAGCATTGTCTGCGAGTTTTGGAGTTGGGTGATGCAGGGAGGGACAGACC
TGCAGCCAGGAGGTTGCTCGAGCGTACAACGGAGTCACGGTCCTCGCCAC
GCTCCATCCCAACTCACACGAGACTTCACGCAGATGACCAGGGAAAACGA
GGAGACTACGGTCACGCTAGATATCTGCCACCACACGTTGGTCCTACATC
AGAGCCGCAGATCATACAACTGTGGGTCGACGCTGTGGAGTGCAGGCCTA
GTGCTAGCTCGCGCTGTGTCAGGCCCACGGAGCACAATCTTACTAGGGAA
TGAAGAGCGAGACAAGGCGCTGCAAGAACACTTCGTGAAAGAGCTTGGAA
AGCTTTTTTCAATAAAGCCTATCAAACGCAAGAGACTGAGCGTATTGGAG
GGTTTTCATGAGCTGATCGAAGTATGGGTGTGTAGAAGGAGACGATATAA
AGGAGAGGATGAGCTGGCAATACATCATGAGGCGGAGAAGGAGAGCAATA
CCAAAGGCCACAAATAAGAAAACGTGAAATTGACTTGCAAGTGAAAGAGT
ATGTATGGGGCCAAGCTCCCGAAGATTGTGGCCTTCAGCCACCTTACGAT
TTAATTTTGGGAGCTGATTGTATTTACGACATTGCTCAAGTTGAACCTTT
CCTTCAGTCTCTCAGCCGGTTTAGGTCTGGCAGGCATCGTTTGCGCGTTA
CAAGAGAACTGTGCACAGGTTACTTTGACTGATTTGGGTTCGGTCCTCCC
TTACCTGCAGAAGAATGCTCAATACATCCCCAGCATGGTATTACAGGACG
GTACTTGGAGCAAGAAAAGGGTCTCTTCAACAAAAGCAAGCATTGTCTGC
GAGTTTTGGAGTTGGGTGATGCAGGGAGGGACAGACCTGCAGCCAGGAGG
TTGCTCGAGCGTACAACGGAGTCACGGTCCTCGCCACGCTCCATCCCAAC
TCACACGAGACTTCACGCAGATGACCAGGGAAAACGAGGAGACTACGGTC
ACGCTAGATATCTGCCACCACACGTTGGTCCTACATCAGAGCCGCAGATC
ATACAACTGTGGGTCGACGCTGTGGAGTGCAGGCCTAGTGCTAGCTCGCG
CTGTGTCAGGCCCACGGAGCACAATCTTACTAGGGAATGAAGAGCGAGAC
AAGGCGCTGCAAGAACACTTCGTGAAAGAGCTTGGAAAGCTTTTTTCAAT
AAAGCCTATCAAACGCAAGAGACTGAGCGTATTGGAGGGTTTTCATGAGC
TGATCGAAGTATGGGTGTGTAGAAGGAGACGATATAAAGGAGAGGATGAG
CTGGCAATACATCATGAGGCGGAGAAGGAGAGCAATACCAAAGGCCACAA
ATAAGAAAACGTGAAATTGACTTGCAAGTGAAAGAGTATGTATGGGGCCA
AGCTCCCGAAGATTGTGGCCTTCAGCCACCTTACGATTTAATTTTGGGAG
CTGATTGTATTTACGACATTGCTCAAGTTGAACCTTTCCTTCAGTCTCTC
AGCCGGTTTAGGTCTGGCAGGCATCGTTTGCGCGTTACAAGAGAACTGTG
CACAGGTTACTTTGACTGATTTGGGTTCGGTCCTCCCTTACCTGCAGAAG
AATGCTCAATACATCCCCAGCATGGTATTACAGGACGGTACTTGGAGCAA
GAAAAGGGTCTCTTCAACAAAAGCAAGCATTGTCTGCGAGTTTTGGAGTT
GGGTGATGCAGGGAGGGACAGACCTGCAGCCAGGAGGTTGCTCGAGCGTA
CAACGGAGTCACGGTCCTCGCCACGCTCCATCCCAACTCACACGAGACTT
CACGCAGATGACCAGGGAAAACGAGGAGACTACGGTCACGCTAGATATCT
GCCACCACACGTTGGTCCTACATCAGAGCCGCAGATCATACAACTGTGGG
TCGACGCTGTGGAGTGCAGGCCTAGTGCTAGCTCG
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Synonyms
Publications