rna8781, rna8781 (mRNA) Nannochloropsis gaditana

Overview
Namerna8781
Unique Namerna8781
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3162
Alignment locationKK037250.1:147829..148113 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100070g6.4226.mrna
Orig protein idgnl|cribi|Naga_100070g6.4226
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:147829..148113 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100070g6gene8512Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8781rna8781-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21912.1cds8751Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8781 ID=rna8781|Name=rna8781|organism=Nannochloropsis gaditana|type=mRNA|length=3162bp
ATGTCGCCAGCTTGTTGTAACATTACCCGGAGCCTTCTACAAATACTTTG
GTATGCTGCGTACGCTCAATCGAAGTCATTGTGGAGTGCTATAAGTGAAA
ACGGATCCTTTTCAATCTTAAGCAATTGCGTGCGACAGGCGGATCCTGCT
CTCTTTGCTCTTATCAATGGGACAGCTCCTTCCACAGCATGCTACACACT
TTTTGCTCCCCTCGACAGTGCGTTCTCGGATGCGGTCAACGCGGCTACTT
GTCCCAAAGGCGATCATGAGTCTGCAACAGCAATCATATCTTACCTGCTG
TCCAACCAGACCTCCCCAGTACCATACTTAAATCAACCCTTTGCCTTGCC
GTTTGTGCAAGAAAAAAATCGTAAAGTGAACGACGCAGCGCTTTACGTGT
ATAGCATCAATAAAGACGCCGTGACACAGGAATCGCTTGCGCCTATACTG
TACGTAAACAACGCCGAGGCAAAGAGTTGGGAAGACCTACCGGCGTCACC
GGGCGGAAGTCACTACTTGGTAACACTTGCCCGTTATTTGGAGCCCCCCC
CGGGGAAAGGCAGTCTGTGGGATGTGCTCCAGGCCCACGAGAATTTTTCC
ACTACAGCCACACTAATCGGTACGAAGCTACCCGAATTCCAAAGAGCTTT
GGAAGCAAGCCCTGATGTGGCCGGCCATACAGGGTACCACACGATTTTTG
TGCCGACCGACGCGGCCTGGGCCAAGGTGTCAGCTGACCGACTGGCGCGT
TTGCAGGGGGATCCACAGGCTTTGCAAACACTCTTAAGCTATCATACATT
ATCTGGCAACCAGCCCGGGGGCGATTACCCTCGGTCGACCACGGGCATGT
ACTACTCCCAGCAATTCTACCCAACTCCCGGCCTGCAGGCTCGCGACATC
TATGAAGCATTCTACTCCTCCCTCTCTTCCTTCACCGGACTCCGTCTTTC
AAACGACCTAGGAATTCTACTTGACATAAGTCGCCTGAATGGTACCCTTT
ACTTGGAGGGCGGCAGAGGGGCCGTCGTGATTCCGAACCTCTCCGCCTTC
AACGGGGTTGCACACGGCCTGGAAAGTGTCTTGCCGCTCCCCGAGGCGCT
CCCTGACGTCGTGGCCTCACCACCGCCTGTATTAGCCGCTGCAGGAAACT
TTTCAATTTTGTCTCAGCTCTTGTATACAGCTTCGATATCAGAGGCACCC
GAATTGGCCACGGGCGGGCCTTTTACATTCTTGGCACCCACAGATGCAGC
TTTCGCCGCTGCCTTTGCCAGTGGCCAGCTCCCGAGTCTTGCCGTCCTGC
TCGGAGATTCAGCACTAGTGGCCTCTCTATGTCGATACTGGGCTGTCGAT
TCTTCAGTGCACTTGTACCTGTTTTCCCCTGACCCCTACGCCGACCCCTT
CAAGGATGACTTCGCGGACGGCACGTCGTTGCTCGACGGTCAGAAGCGGA
CATTGTGGGTCCACAGGCTGGTGAGCTCTGACAGCACCAGCCTAGGGGGG
AAGATTAACGATACGTCTGTCTTCATAAATAATGCACGGGTGTACCAGTG
TGTGGAGGGTAAGGGGTGGGGCCATGACTGTGGTGCCCAGCCTACTCCCA
GCAACACTTACTCCATCAATGACGGCCACCTGGTGAACATAGTGCACGCC
TTAGACGCGGTCCCGTTACCCCCCAAAGCGGGCACTCTCTTCCAAACCCT
CTTGCAGGATCCGGATGTGAGTTCTTTTGTGGATCTCTTGCAGGCCTGTC
CAAGTGGCATTGACCTGGTTTCCAAGCTCAATGCCACAACGCATACAAGT
CCGAGCAGCAGCAGCAGCAGCAGCACTTTGACTGGAAGAGTCGACGAGAG
CCAAAAGCTCTTCACGCTTTGGGTGCCTAGTAATCAAGCAATAGCAGAGC
TCAATGAGACGCGACCTTGGCTTCTGGATTCGTCCGAAGCCATAGACGAA
GTTGTGCGATATCATATCGTGCCCCAATTATGGTACGCGCGATGGACGCA
TCCCTCCCGAGCTCTGCCCACCCTTGCATTTGATGGTGAAGCGCAGATTT
TGACAAACGCGACCACATGGAATTCTCCATCTGCTGCGTTCATCAATTCG
CATGACAGGCTGTATGTTAACCGAATCCGCGTCACTGATACCGACATTGC
AGCGAGCAATGGCGTGGTGCACAAGATCAGCGGTGTCCTGATTCCAGATT
TGATGCAGGTTGCTTACGCCTCAGGCGGTCTACAACGGATGGTGGAGGCT
TTGGAGAGTAAAGAAGGAGCGTACAACGGGACGATCCTAGCCCAGGTTCT
GACGGGCCCTGGACCTTTCACTCTTTTTGCGCCTCGTGACAACGTCTTGG
ATCTTGGAGACACTGTGTTGGCTTCTTCGCAGCTCCAGTACCACGTGGGC
CTGAGCGTGGTACTGGTTGAGAACATAACAAAATATTTTCAGAACGCTAA
GCGAACTACAAGAGAGACGACAACAATCAGTTCTCTATCAGGGCTTCCCT
TGTATGTGGCAAACTTGAAGGCCACCATCTCAAACCCCTACGCGGGGTCA
AAAAGTGGGTTCTACGTTAATCAAGCCGAGATGCTTTTGCCAGTGCATCG
AGCAGTCAATGGGATATTATACGCAGTGGATGCTGTCTTAAGCCCGCCCG
ACGAGACAATTATGGATCTTTTGCGAAGACTAGATGACGGACGAGCCTTC
GCAGACATGTTGACGCAAACGGGACTTCACAAAGAGCTGGAGAGCAGTGA
ATCATGGACAATTTTTGCTCCAACGACTTCAACTTTGAAAAATCTCTATC
AAAAACAGCAAATTTGGGGAGATCCGTGTCAGGCCTCACAAATTTTGGCA
TTCCACCTCGTCAAGGGCCGGCGACTCTTTACGCCGTCGTTTGCAAATGT
CAGCACTTGCACGCTGAGCACAGAGGGATTTTGCCTGGGTCCTTCCGATG
TTATGTCCCTACAGGGTCAACCATTGGCCACCCAGGTAGTCTCCAAGTCC
CAGTTATTCCTGAGTACAATACATGGCGCCTTCACTGCTCCCGTTGTCTA
CCCAGACGTGCATGCCAGCAACGGTGTTGTGCATTTTGTCAATGGGATTC
TGACCTACAGCGGCTATAAGCGACCTTCGCATCCTCAGCAAGGGGGACAG
AGAAATATTTGA
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protein sequence of rna8781

>rna8781-protein ID=rna8781-protein|Name=rna8781|organism=Nannochloropsis gaditana|type=polypeptide|length=67bp
MARVENVCAFAEKAPLRLVGKCITVVVTQSKASQVTNVPLYSMPRYRKVE
EQFNEFLLAPTVEPVKT
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mRNA from alignment at KK037250.1:147829..148113+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8781 ID=rna8781|Name=rna8781|organism=Nannochloropsis gaditana|type=mRNA|length=285bp|location=Sequence derived from alignment at KK037250.1:147829..148113+ (Nannochloropsis gaditana)
ATGGCCAGAGTGGAGAATGTATGTGCATTCGCTGAGAAGGCCCCTCTCCG
TTTAGTAGGGAAATGTATTAGTGACTGAATCTGATGTGACAGGCCGAAAA
AAAAACGTAAAAGCAGTTATGGTCACACAATCCAAAGAATCGCAAGTAAA
GCGGTTGTGGTCACACAATCCAAAGCATCGCAAGTAACCAACGTGCCACT
GTATTCTATGCCACGTTACAGAAAGGTCGAAGAGCAATTCAACGAATTTT
TACTTGCGCCCACAGTTGAACCAGTGAAGACATAA
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Coding sequence (CDS) from alignment at KK037250.1:147829..148113+

>rna8781 ID=rna8781|Name=rna8781|organism=Nannochloropsis gaditana|type=CDS|length=408bp|location=Sequence derived from alignment at KK037250.1:147829..148113+ (Nannochloropsis gaditana)
ATGGCCAGAGTGGAGAATGTATGTGCATTCGCTGAGAAGGCCCCTCTCCG
TTTAGTAGGGAAATGTATTACGGTTGTGGTCACACAATCCAAAGCATCGC
AAGTAACCAACGTGCCACTGTATTCTATGCCACGTTACAGAAAGGTCGAA
GAGCAATTCAACGAATTTTTACTTGCGCCCACAGTTGAACCAGTGAAGAC
ATAAATGGCCAGAGTGGAGAATGTATGTGCATTCGCTGAGAAGGCCCCTC
TCCGTTTAGTAGGGAAATGTATTACGGTTGTGGTCACACAATCCAAAGCA
TCGCAAGTAACCAACGTGCCACTGTATTCTATGCCACGTTACAGAAAGGT
CGAAGAGCAATTCAACGAATTTTTACTTGCGCCCACAGTTGAACCAGTGA
AGACATAA
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Synonyms
Publications