rna8780, rna8780 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8780
Unique Name	rna8780
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1617
Alignment location	KK037250.1:143667..146828 -

Link to JBrowse

Properties


Property Name	Value
Product	transforming growth beta- 68kda
Orig transcript id	gnl\|cribi\|Naga_100070g5.4230.mrna
Orig protein id	gnl\|cribi\|Naga_100070g5.4230
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:143667..146828 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100070g5	gene8511	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21916.1	cds8750	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8780	rna8780-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:143667..146828-
coding sequence from alignment at KK037250.1:143667..146828-

mRNA sequence

>rna8780 ID=rna8780|Name=rna8780|organism=Nannochloropsis gaditana|type=mRNA|length=1617bp
ATGTATTCAACGACGATCATGTGCGAGCGCAAACACTTGGCACCGGGACG
AACAAGCCTTCACCCGTTAAGGCGTCACCTTCATAGAAGCTTTGATCGCA
AAAAAATAATTTTAGACTACCAAAAAGATATTGCAATGAAAATTTACGAT
GAGCTTTCATCAGTAGTGCTCATGGCGACCTCAAAACCTACTGTTCTGCC
GTCAGACTACGCTGTAATACCAATTCCTATTCCATTCTACCCATCATCAT
GCACAAAACTTCACGTACAAGAGGAATCGGGAAACGCGCAACGACAGCAT
CAAATGTCGCGATCTTTCCCTCCTCTCCGTAACTCTTCCTTCTGCCCGAC
ATATGGCCCGAAACACTCCCGACAGGCACAAACGACATGTACGCCTGTAA
GGGTCCGACAGCGATCCTGCCTCCCTGCGGAACTGACAAAGTCGTTGCAA
TGCTTTCCTAAACCAAAAGTCCCTTGCCTGGGCGCTTCTGTCCGAACTAT
AACTACTCGTTTAACGAGTAAGGACATGATCAAGAAATTAAGCAGGGGTG
GTGATCGAAAGCGACGACGAGCTTCAGCCATTCGTTGTCATCCCGACCCA
GTGCCTTCATCTGAATGCCAGCATGCGGGTAATTTTTTCGACACCCTCTC
TCATTTTTTACTTCAATCTGAGGAAATTCAGCGGGATCGTTGCAAGTTCT
ACCGCGCTGATGCCGAGAAGTCGCCATCGGTGCAATCTAATGGGAAAGCG
GACACTTCATGCAAGGGCGTCTCTGGTAGTGTCGAAACTATATCAGCGCC
TGAATTTGAAGCGAAGAAGTCATACACATATTCGGCCCGTGAAAGGTGCA
GCCTAAACGTATCAGTCGCACTTAAGCATTGTGAAGTGAGAGAGCTCGCT
ACGGGGCCAGGAAATCAGGTGGTGGAGATTTCGATAGAAGGCCTTGATCC
TTCTCCCCGACATGAGGCCCCATACGAAATATCGCCATGCTTTAACTCAC
GTGTACGCATGAAGCACTCCCACCACAGTGATGTCTACGCCTCTTCTCTA
CACTCGAGTGGAGAAACTGCAGCTGTGATTAGCAAGCCCGATGCGGCCTC
CACCGAGAGATCCAATGATTTGAGAAGCTCATGCATACAGCCCTCAACTT
TTGTGGCTTTTCCTGACTCAATTTCCGATGATTTATTACCAACGCATCAT
AGCAATTCTAATTGCTACTCTTGTGAGGACGAACACAATGCAAAGGTGTC
CACAAACATAATAGATTTGTCCTCTCTTCGCACCCAGCACTTGAGTCATG
TCAATTTTACTGACTCACGTCGCGAGAAGTCATCCCTTTCACCTGGTTTA
AAAGGGGACAAGAATACGGTGTGGCAAGCTGGCGGGACAACAGAACCAAT
TTCCGTGAAACGCGACTCTTTGAGCAGTTTTGCTCAAAGAGAGAATAGCG
AAGACGGGTACATGACGGAATCAAGTGGGCTCTCCCTCTCTACTGCGCGT
TCCATCTCTTCTTCATCATTCACGTCTTCGTCCTGCGACTGTTCTTCATG
CTGCCTCTCAAACTCAACTTCCTCGTCTTCTCCAAGCTCTAAATCAACAA
TGGAGGATGATGTTTGA

protein sequence of rna8780

>rna8780-protein ID=rna8780-protein|Name=rna8780|organism=Nannochloropsis gaditana|type=polypeptide|length=1053bp
MSPACCNITRSLLQILWYAAYAQSKSLWSAISENGSFSILSNCVRQADPA
LFALINGTAPSTACYTLFAPLDSAFSDAVNAATCPKGDHESATAIISYLL
SNQTSPVPYLNQPFALPFVQEKNRKVNDAALYVYSINKDAVTQESLAPIL
YVNNAEAKSWEDLPASPGGSHYLVTLARYLEPPPGKGSLWDVLQAHENFS
TTATLIGTKLPEFQRALEASPDVAGHTGYHTIFVPTDAAWAKVSADRLAR
LQGDPQALQTLLSYHTLSGNQPGGDYPRSTTGMYYSQQFYPTPGLQARDI
YEAFYSSLSSFTGLRLSNDLGILLDISRLNGTLYLEGGRGAVVIPNLSAF
NGVAHGLESVLPLPEALPDVVASPPPVLAAAGNFSILSQLLYTASISEAP
ELATGGPFTFLAPTDAAFAAAFASGQLPSLAVLLGDSALVASLCRYWAVD
SSVHLYLFSPDPYADPFKDDFADGTSLLDGQKRTLWVHRLVSSDSTSLGG
KINDTSVFINNARVYQCVEGKGWGHDCGAQPTPSNTYSINDGHLVNIVHA
LDAVPLPPKAGTLFQTLLQDPDVSSFVDLLQACPSGIDLVSKLNATTHTS
PSSSSSSSTLTGRVDESQKLFTLWVPSNQAIAELNETRPWLLDSSEAIDE
VVRYHIVPQLWYARWTHPSRALPTLAFDGEAQILTNATTWNSPSAAFINS
HDRLYVNRIRVTDTDIAASNGVVHKISGVLIPDLMQVAYASGGLQRMVEA
LESKEGAYNGTILAQVLTGPGPFTLFAPRDNVLDLGDTVLASSQLQYHVG
LSVVLVENITKYFQNAKRTTRETTTISSLSGLPLYVANLKATISNPYAGS
KSGFYVNQAEMLLPVHRAVNGILYAVDAVLSPPDETIMDLLRRLDDGRAF
ADMLTQTGLHKELESSESWTIFAPTTSTLKNLYQKQQIWGDPCQASQILA
FHLVKGRRLFTPSFANVSTCTLSTEGFCLGPSDVMSLQGQPLATQVVSKS
QLFLSTIHGAFTAPVVYPDVHASNGVVHFVNGILTYSGYKRPSHPQQGGQ
RNI

mRNA from alignment at KK037250.1:143667..146828-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8780 ID=rna8780|Name=rna8780|organism=Nannochloropsis gaditana|type=mRNA|length=3162bp|location=Sequence derived from alignment at KK037250.1:143667..146828- (Nannochloropsis gaditana)
ATGTCGCCAGCTTGTTGTAACATTACCCGGAGCCTTCTACAAATACTTTG
GTATGCTGCGTACGCTCAATCGAAGTCATTGTGGAGTGCTATAAGTGAAA
ACGGATCCTTTTCAATCTTAAGCAATTGCGTGCGACAGGCGGATCCTGCT
CTCTTTGCTCTTATCAATGGGACAGCTCCTTCCACAGCATGCTACACACT
TTTTGCTCCCCTCGACAGTGCGTTCTCGGATGCGGTCAACGCGGCTACTT
GTCCCAAAGGCGATCATGAGTCTGCAACAGCAATCATATCTTACCTGCTG
TCCAACCAGACCTCCCCAGTACCATACTTAAATCAACCCTTTGCCTTGCC
GTTTGTGCAAGAAAAAAATCGTAAAGTGAACGACGCAGCGCTTTACGTGT
ATAGCATCAATAAAGACGCCGTGACACAGGAATCGCTTGCGCCTATACTG
TACGTAAACAACGCCGAGGCAAAGAGTTGGGAAGACCTACCGGCGTCACC
GGGCGGAAGTCACTACTTGGTAACACTTGCCCGTTATTTGGAGCCCCCCC
CGGGGAAAGGCAGTCTGTGGGATGTGCTCCAGGCCCACGAGAATTTTTCC
ACTACAGCCACACTAATCGGTACGAAGCTACCCGAATTCCAAAGAGCTTT
GGAAGCAAGCCCTGATGTGGCCGGCCATACAGGGTACCACACGATTTTTG
TGCCGACCGACGCGGCCTGGGCCAAGGTGTCAGCTGACCGACTGGCGCGT
TTGCAGGGGGATCCACAGGCTTTGCAAACACTCTTAAGCTATCATACATT
ATCTGGCAACCAGCCCGGGGGCGATTACCCTCGGTCGACCACGGGCATGT
ACTACTCCCAGCAATTCTACCCAACTCCCGGCCTGCAGGCTCGCGACATC
TATGAAGCATTCTACTCCTCCCTCTCTTCCTTCACCGGACTCCGTCTTTC
AAACGACCTAGGAATTCTACTTGACATAAGTCGCCTGAATGGTACCCTTT
ACTTGGAGGGCGGCAGAGGGGCCGTCGTGATTCCGAACCTCTCCGCCTTC
AACGGGGTTGCACACGGCCTGGAAAGTGTCTTGCCGCTCCCCGAGGCGCT
CCCTGACGTCGTGGCCTCACCACCGCCTGTATTAGCCGCTGCAGGAAACT
TTTCAATTTTGTCTCAGCTCTTGTATACAGCTTCGATATCAGAGGCACCC
GAATTGGCCACGGGCGGGCCTTTTACATTCTTGGCACCCACAGATGCAGC
TTTCGCCGCTGCCTTTGCCAGTGGCCAGCTCCCGAGTCTTGCCGTCCTGC
TCGGAGATTCAGCACTAGTGGCCTCTCTATGTCGATACTGGGCTGTCGAT
TCTTCAGTGCACTTGTACCTGTTTTCCCCTGACCCCTACGCCGACCCCTT
CAAGGATGACTTCGCGGACGGCACGTCGTTGCTCGACGGTCAGAAGCGGA
CATTGTGGGTCCACAGGCTGGTGAGCTCTGACAGCACCAGCCTAGGGGGG
AAGATTAACGATACGTCTGTCTTCATAAATAATGCACGGGTGTACCAGTG
TGTGGAGGGTAAGGGGTGGGGCCATGACTGTGGTGCCCAGCCTACTCCCA
GCAACACTTACTCCATCAATGACGGCCACCTGGTGAACATAGTGCACGCC
TTAGACGCGGTCCCGTTACCCCCCAAAGCGGGCACTCTCTTCCAAACCCT
CTTGCAGGATCCGGATGTGAGTTCTTTTGTGGATCTCTTGCAGGCCTGTC
CAAGTGGCATTGACCTGGTTTCCAAGCTCAATGCCACAACGCATACAAGT
CCGAGCAGCAGCAGCAGCAGCAGCACTTTGACTGGAAGAGTCGACGAGAG
CCAAAAGCTCTTCACGCTTTGGGTGCCTAGTAATCAAGCAATAGCAGAGC
TCAATGAGACGCGACCTTGGCTTCTGGATTCGTCCGAAGCCATAGACGAA
GTTGTGCGATATCATATCGTGCCCCAATTATGGTACGCGCGATGGACGCA
TCCCTCCCGAGCTCTGCCCACCCTTGCATTTGATGGTGAAGCGCAGATTT
TGACAAACGCGACCACATGGAATTCTCCATCTGCTGCGTTCATCAATTCG
CATGACAGGCTGTATGTTAACCGAATCCGCGTCACTGATACCGACATTGC
AGCGAGCAATGGCGTGGTGCACAAGATCAGCGGTGTCCTGATTCCAGATT
TGATGCAGGTTGCTTACGCCTCAGGCGGTCTACAACGGATGGTGGAGGCT
TTGGAGAGTAAAGAAGGAGCGTACAACGGGACGATCCTAGCCCAGGTTCT
GACGGGCCCTGGACCTTTCACTCTTTTTGCGCCTCGTGACAACGTCTTGG
ATCTTGGAGACACTGTGTTGGCTTCTTCGCAGCTCCAGTACCACGTGGGC
CTGAGCGTGGTACTGGTTGAGAACATAACAAAATATTTTCAGAACGCTAA
GCGAACTACAAGAGAGACGACAACAATCAGTTCTCTATCAGGGCTTCCCT
TGTATGTGGCAAACTTGAAGGCCACCATCTCAAACCCCTACGCGGGGTCA
AAAAGTGGGTTCTACGTTAATCAAGCCGAGATGCTTTTGCCAGTGCATCG
AGCAGTCAATGGGATATTATACGCAGTGGATGCTGTCTTAAGCCCGCCCG
ACGAGACAATTATGGATCTTTTGCGAAGACTAGATGACGGACGAGCCTTC
GCAGACATGTTGACGCAAACGGGACTTCACAAAGAGCTGGAGAGCAGTGA
ATCATGGACAATTTTTGCTCCAACGACTTCAACTTTGAAAAATCTCTATC
AAAAACAGCAAATTTGGGGAGATCCGTGTCAGGCCTCACAAATTTTGGCA
TTCCACCTCGTCAAGGGCCGGCGACTCTTTACGCCGTCGTTTGCAAATGT
CAGCACTTGCACGCTGAGCACAGAGGGATTTTGCCTGGGTCCTTCCGATG
TTATGTCCCTACAGGGTCAACCATTGGCCACCCAGGTAGTCTCCAAGTCC
CAGTTATTCCTGAGTACAATACATGGCGCCTTCACTGCTCCCGTTGTCTA
CCCAGACGTGCATGCCAGCAACGGTGTTGTGCATTTTGTCAATGGGATTC
TGACCTACAGCGGCTATAAGCGACCTTCGCATCCTCAGCAAGGGGGACAG
AGAAATATTTGA

Coding sequence (CDS) from alignment at KK037250.1:143667..146828-

>rna8780 ID=rna8780|Name=rna8780|organism=Nannochloropsis gaditana|type=CDS|length=3162bp|location=Sequence derived from alignment at KK037250.1:143667..146828- (Nannochloropsis gaditana)
ATGTCGCCAGCTTGTTGTAACATTACCCGGAGCCTTCTACAAATACTTTG
GTATGCTGCGTACGCTCAATCGAAGTCATTGTGGAGTGCTATAAGTGAAA
ACGGATCCTTTTCAATCTTAAGCAATTGCGTGCGACAGGCGGATCCTGCT
CTCTTTGCTCTTATCAATGGGACAGCTCCTTCCACAGCATGCTACACACT
TTTTGCTCCCCTCGACAGTGCGTTCTCGGATGCGGTCAACGCGGCTACTT
GTCCCAAAGGCGATCATGAGTCTGCAACAGCAATCATATCTTACCTGCTG
TCCAACCAGACCTCCCCAGTACCATACTTAAATCAACCCTTTGCCTTGCC
GTTTGTGCAAGAAAAAAATCGTAAAGTGAACGACGCAGCGCTTTACGTGT
ATAGCATCAATAAAGACGCCGTGACACAGGAATCGCTTGCGCCTATACTG
TACGTAAACAACGCCGAGGCAAAGAGTTGGGAAGACCTACCGGCGTCACC
GGGCGGAAGTCACTACTTGGTAACACTTGCCCGTTATTTGGAGCCCCCCC
CGGGGAAAGGCAGTCTGTGGGATGTGCTCCAGGCCCACGAGAATTTTTCC
ACTACAGCCACACTAATCGGTACGAAGCTACCCGAATTCCAAAGAGCTTT
GGAAGCAAGCCCTGATGTGGCCGGCCATACAGGGTACCACACGATTTTTG
TGCCGACCGACGCGGCCTGGGCCAAGGTGTCAGCTGACCGACTGGCGCGT
TTGCAGGGGGATCCACAGGCTTTGCAAACACTCTTAAGCTATCATACATT
ATCTGGCAACCAGCCCGGGGGCGATTACCCTCGGTCGACCACGGGCATGT
ACTACTCCCAGCAATTCTACCCAACTCCCGGCCTGCAGGCTCGCGACATC
TATGAAGCATTCTACTCCTCCCTCTCTTCCTTCACCGGACTCCGTCTTTC
AAACGACCTAGGAATTCTACTTGACATAAGTCGCCTGAATGGTACCCTTT
ACTTGGAGGGCGGCAGAGGGGCCGTCGTGATTCCGAACCTCTCCGCCTTC
AACGGGGTTGCACACGGCCTGGAAAGTGTCTTGCCGCTCCCCGAGGCGCT
CCCTGACGTCGTGGCCTCACCACCGCCTGTATTAGCCGCTGCAGGAAACT
TTTCAATTTTGTCTCAGCTCTTGTATACAGCTTCGATATCAGAGGCACCC
GAATTGGCCACGGGCGGGCCTTTTACATTCTTGGCACCCACAGATGCAGC
TTTCGCCGCTGCCTTTGCCAGTGGCCAGCTCCCGAGTCTTGCCGTCCTGC
TCGGAGATTCAGCACTAGTGGCCTCTCTATGTCGATACTGGGCTGTCGAT
TCTTCAGTGCACTTGTACCTGTTTTCCCCTGACCCCTACGCCGACCCCTT
CAAGGATGACTTCGCGGACGGCACGTCGTTGCTCGACGGTCAGAAGCGGA
CATTGTGGGTCCACAGGCTGGTGAGCTCTGACAGCACCAGCCTAGGGGGG
AAGATTAACGATACGTCTGTCTTCATAAATAATGCACGGGTGTACCAGTG
TGTGGAGGGTAAGGGGTGGGGCCATGACTGTGGTGCCCAGCCTACTCCCA
GCAACACTTACTCCATCAATGACGGCCACCTGGTGAACATAGTGCACGCC
TTAGACGCGGTCCCGTTACCCCCCAAAGCGGGCACTCTCTTCCAAACCCT
CTTGCAGGATCCGGATGTGAGTTCTTTTGTGGATCTCTTGCAGGCCTGTC
CAAGTGGCATTGACCTGGTTTCCAAGCTCAATGCCACAACGCATACAAGT
CCGAGCAGCAGCAGCAGCAGCAGCACTTTGACTGGAAGAGTCGACGAGAG
CCAAAAGCTCTTCACGCTTTGGGTGCCTAGTAATCAAGCAATAGCAGAGC
TCAATGAGACGCGACCTTGGCTTCTGGATTCGTCCGAAGCCATAGACGAA
GTTGTGCGATATCATATCGTGCCCCAATTATGGTACGCGCGATGGACGCA
TCCCTCCCGAGCTCTGCCCACCCTTGCATTTGATGGTGAAGCGCAGATTT
TGACAAACGCGACCACATGGAATTCTCCATCTGCTGCGTTCATCAATTCG
CATGACAGGCTGTATGTTAACCGAATCCGCGTCACTGATACCGACATTGC
AGCGAGCAATGGCGTGGTGCACAAGATCAGCGGTGTCCTGATTCCAGATT
TGATGCAGGTTGCTTACGCCTCAGGCGGTCTACAACGGATGGTGGAGGCT
TTGGAGAGTAAAGAAGGAGCGTACAACGGGACGATCCTAGCCCAGGTTCT
GACGGGCCCTGGACCTTTCACTCTTTTTGCGCCTCGTGACAACGTCTTGG
ATCTTGGAGACACTGTGTTGGCTTCTTCGCAGCTCCAGTACCACGTGGGC
CTGAGCGTGGTACTGGTTGAGAACATAACAAAATATTTTCAGAACGCTAA
GCGAACTACAAGAGAGACGACAACAATCAGTTCTCTATCAGGGCTTCCCT
TGTATGTGGCAAACTTGAAGGCCACCATCTCAAACCCCTACGCGGGGTCA
AAAAGTGGGTTCTACGTTAATCAAGCCGAGATGCTTTTGCCAGTGCATCG
AGCAGTCAATGGGATATTATACGCAGTGGATGCTGTCTTAAGCCCGCCCG
ACGAGACAATTATGGATCTTTTGCGAAGACTAGATGACGGACGAGCCTTC
GCAGACATGTTGACGCAAACGGGACTTCACAAAGAGCTGGAGAGCAGTGA
ATCATGGACAATTTTTGCTCCAACGACTTCAACTTTGAAAAATCTCTATC
AAAAACAGCAAATTTGGGGAGATCCGTGTCAGGCCTCACAAATTTTGGCA
TTCCACCTCGTCAAGGGCCGGCGACTCTTTACGCCGTCGTTTGCAAATGT
CAGCACTTGCACGCTGAGCACAGAGGGATTTTGCCTGGGTCCTTCCGATG
TTATGTCCCTACAGGGTCAACCATTGGCCACCCAGGTAGTCTCCAAGTCC
CAGTTATTCCTGAGTACAATACATGGCGCCTTCACTGCTCCCGTTGTCTA
CCCAGACGTGCATGCCAGCAACGGTGTTGTGCATTTTGTCAATGGGATTC
TGACCTACAGCGGCTATAAGCGACCTTCGCATCCTCAGCAAGGGGGACAG
AGAAATATTTGA

Synonyms

Publications