rna8778, rna8778 (mRNA) Nannochloropsis gaditana

Overview
Namerna8778
Unique Namerna8778
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1930
Alignment locationKK037250.1:139576..141783 +

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Properties
Property NameValue
Product30s ribosomal protein s15
Orig transcript idgnl|cribi|Naga_100070g2.4222.mrna
Orig protein idgnl|cribi|Naga_100070g2.4222
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:139576..141783 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100070g2gene8509Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8778rna8778-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21908.1cds8748Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8778 ID=rna8778|Name=rna8778|organism=Nannochloropsis gaditana|type=mRNA|length=1930bp
TTGGACTGCGCGGGTGTCTTTCATGCGTCCGGGGCTCCTGGCTCTCATGC
TCGATCCATCCGTGCGTGCCTTCTGCGTTGATCGCACACTGGGGGTGCGA
TCAGGCGAAGGGGGATACCTTATTGGGTTCGAAAGCAAAGTGCCCTGCTT
CGTGTGGCTCGGTTGGCTAGGGGAGGGCGACATCTTACCCCATTGCTGCT
GCCACTGCCAAATAAGATTGTATGGGGTTACAACGATTCTTTGGCAAGCT
GTGAATAGGTGCTCACTTCTTCTTTTTTCCTCTTTTGGTTTTGCCAAGAA
AAATATATGGATGTAAAGTGTGTTTACATTGCGCGGTCAATTATGTCCGC
AGGACGCACGAGTATCTTGCTATTTCTCACGCTCCAGGCTACTCGTTGAT
AGCCCTCACAGGATCCAAATCATGCTGTTGCAAAAAGGAGTACTGGTGAG
CTGTTTGCTCACTTGCGCAGTTGCCTATGTACCGCCCATGCGTGGTCCTC
GTAGTACGGTGATATCAAAGTCAGTCAAGTTGCGTCTCTATGCCTCGGGG
CCCGAGGCTCCTGGAGGCTCGCAACTGGTGCCGGAGGACGATGAGGAGAT
GACGGAGGGATTCACTGAGATAGACGGCGTCGTGTTCGAGGGCGATTTTG
AGGATGACTCGGTCAAGCCTTCGTTGACATCCTTGCTAGAGGATGTAGCC
GATGATGGGAGCGAGGCATTCAAGTTGGATTCCGACGACTCCTTCTTCTC
CATCCCCGACTACGTGCCCTCCGAGCTCCCGGACCTGGCAGCTCTCGGAT
CAGGACTGGAGAGCAAGCGGGACATGATGAATGAGTTCGTTGAGGGCGGA
GAATTCGACCCGAATGACGAGAAAATGTATCGGCTGCTTGGCTTGGACGC
GCTCGACGAGAAGAAGACCCGCAAGAGTCCCGAGGACTTCACCCTTCCTG
GTGGCTACCTTCTCGAGCAGGCTCGCCTTGAGGTCGCACAGAAATACCAG
AAGCATGACAAGGATGTGGGCTCATCTGCTGTACAGGTGGCACAATTCAC
ACAGACGATCAGCTACTTGACCAAGCACGTGCAAGTGAATCCCCGAGACT
ACTCCGCCCGACGGGGCCTGATTCGGGCCGTGAACATACGCCGGAAGCTC
TTGAACTACATCTCGAAGAGGAACAAGCCATTTGCACTCAAGCTGGCTGC
TGAACTGGGAATCCGCTTCCGCCCACCTGATGGCGCGCGATCTAAGTTTG
AAATGTATCGTTTCTACAAAAATACGAAGAGCAAGAAGGCCAAGAATATG
CAGTCCATTGCGGACCTGAAGGCAGCTGCCGAGGCTCAGGGTGTGAATGC
ATGAGCAGGAGGTCAGCTGTCATATCCATAAGAAGGACGTCGATACTTCT
ATCACATAACGCGCGTTGTGAAACCATGGTCTCACACGCATACCATATCA
GGTCCTGAGTATTGATTATATGTGAGTGTTCTTCTGTGAGGGCTCTATGC
GTGGCGAGACTATTCGAATGCAAGCTGACGGCAAAAGTCGAGAGAGAGGC
ATGCATGCTACCACCCTCGTCAACACATTCCTCTTGACATGTCATACATA
CACTCATGGGGTTTTTTGCAAACTTCTTGGACGAGGGAAAAAAGAGCGGC
AAGTGGATGACCAGGAGTCCCTGCTGCGCAGTGTGCAAGCAGACACGAAG
AGATTGAAGAAAAAGCAATTAAGCTCACTATTTCATATGTTGTATTGATT
TTTTGGGGCTAATGAATTTCTCGGTCTGAATGGACTAGCAATTATTTCAA
ACATCATCCTCCATTGTTGATTTAGAGCTTGGAGAAGACGAGGAAGTTGA
GTTTGAGAGGCAGCATGAAGAACAGTCGCAGGACGAAGACGTGAATGATG
AAGAAGAGATGGAACGCGCAGTAGAGAGGG
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protein sequence of rna8778

>rna8778-protein ID=rna8778-protein|Name=rna8778|organism=Nannochloropsis gaditana|type=polypeptide|length=310bp
MLLQKGVLVSCLLTCAVAYVPPMRGPRSTAVSKSVKLRLYASGPEAPGGS
QLVPEDDEEMTEGFTEIDGVVFEGDFEDDSVKPSLTSLLEDVADDGSEAF
KLDSDDSFFSIPDYVPSELPDLAALGSGLESKRDMMNEFVEGGEFDPNDE
KMYRLLGLDALDEKKTRKSPEDFTLPGGYLLEQARLEVAQKYQKHDKDVG
SSAVQVAQFTQTISYLTKHVQVNPRDYSARRGLIRAVNIRRKLLNYISKR
NKPFALKLAAELGIRFRPPDGARSKFEMYRFYKNTKSKKAKNMQSIADLK
AAAEAQGVNA
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mRNA from alignment at KK037250.1:139576..141783+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8778 ID=rna8778|Name=rna8778|organism=Nannochloropsis gaditana|type=mRNA|length=2208bp|location=Sequence derived from alignment at KK037250.1:139576..141783+ (Nannochloropsis gaditana)
TTGGACTGCGCGGGTGTCTTTCATGCGTCCGGGGCTCCTGGCTCTCATGC
TCGATCCATCCGTGCGTGCCTTCTGCGTTGATCGCACACTGGGGGTGCGA
TCAGGCGAAGGGGGATACCTTATTGGGTTCGAAAGCAAAGTGCCCTGCTT
CGTGTGGCTCGGTTGGctaggggagggcgacatcTTACCCCATTGCTGCT
GCCACTGCCAAATAAGATTGTATGGGGTTACAACGATTCTTTGGCAAGCT
GTGAATAGGTGCtcacttcttcttttttcctcttttggTTTTGCCAAGAA
AAATATATGGATGTAAAGTGTGTTTACATTGCGCGGTCAATTATGTCCGC
AGGACGCACGAGTATCTTGCTATTTCTCACGCTCCAGGCTACTCGTTGAT
AGCCCTCACAGGATCCAAATCATGCTGTTGCAAAAAGGAGTACTGGTGAG
CTGTTTGCTCACTTGCGCAGTTGCCTATGTACCGCCCATGCGTGGTCCTC
GTAGTACGGTGAGTCgtagaggggaagaaacggAATGTCGGGGCGTTGGG
GCGATGCTGAAAAGCGGCCATCATGAAGATGTAACgctgaagaggaaatg
aagaGCTGGAAATATTCGATAAAAATATATGCAGTAGGTGTGTGTATTGA
ACGGATTTTGGTGATTTTTCAAGGAATGTGAGCACCGATCCCATTCGGAG
GGTGCAGTAAAACCCGCAGTTTCCGGACAACTAACTCCTTGGACGTCTGT
TTATGTTATCTGACATCGTTCATGTCAATGCAACAGGCAGTATCAAAGTC
AGTCAAGTTGCGTCTCTATGCCTCGGGGCCCGAGGCTCCTGGAGGCTCGC
AACTGGTGccggaggacgatgaggagatGACGGAGGGATTCACTGAGATA
GACGGCGTCGTGTTCGAGGGCGATTTTGAGGATGACTCGGTCAAGCCTTC
GTTGACATCCTTGCTAGAGGATGTAGCCGATGATGGGAGCGAGGCATTCA
AGTTGGATTCCGAcgactccttcttctccatccccgaCTACGTGCCCTCC
GAGCTCCCGGACCTGGCAGCTCTCGGATCAGGACTGGAGAGCAAGCGGGA
CATGATGAATGAGTTCGTTGAGGGCGGAGAATTCGACCCGAATGACGAGA
AAATGTATCGGCTGCTTGGCTTGGACGCGCTCGACGAGAAGAAGACCCGC
AAGAGTCCCGAGGACTTCACCCTTCCTGGTGGCTACCTTCTCGAGCAGGC
TCGCCTTGAGGTCGCACAGAAATACCAGAAGCATGACAAGGATGTGGGCT
CATCTGCTGTACAGGTGGCACAATTCACACAGACGATCAGCTACTTGACC
AAGCACGTGCAAGTGAATCCCCGAGACTACTCCGCCCGACGGGGCCTGAT
TCGGGCCGTGAACATACGCCGGAAGCTCTTGAACTACATCTCGAAGAGGA
ACAAGCCATTTGCACTCAAGCTGGCTGCTGAACTGGGAATCCGCTTCCGC
CCACCTGATGGCGCGCGATCTAAGTTTGAAATGTATCGTTTCTACAAAAA
TACGAAGAGCAAGAAGGCCAAGAATATGCAGTCCATTGCGGACCTGAAGG
CAGCTGCCGAGGCTCAGGGTGTGAATGCATGAGCAGGAGGTCAGCTGTCA
TATCCATAAGAAGGACGTCGATACTTCTATCACATAACGCGCGTTGTGAA
ACCATGGTCTCACACGCATACCATATCAGGTCCTGAGTATTGATTATATG
TGAGTGTTCTTCTGTGAGGGCTCTATGCGTGGCGAGACTATTCGAATGCA
AGCTGACGGCAAAAGTCGAGAGAGAGGCATGCATGCTACCACCCTCGTCA
ACACATTCCTCTTGACATGTCATACATACACTCATGGGGTTTTTTGCAAA
CTTCTTGGacgagggaaaaaagagcggCAAGTGGATGACCAGGAGTCCCT
GCTGCGCAGTGTGCAAGCAGACACGAAGAGattgaagaaaaagcaatTAA
GCTCACTATTTCATATGTTGTATTGATTTTTTGGGGCTAATGAATTTCTC
GGTCTGAATGGACTAGCAATTATTTCAAACATCATCCTCCATTGTTGATT
TAGAGcttggagaagacgaggaagttGAGTTTGAGAGGCAGCATGAAGAA
CAGTCGCAGGACGAAGACGTGaatgatgaagaagagatgGAACGCGCagt
agagaggg
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Coding sequence (CDS) from alignment at KK037250.1:139576..141783+

>rna8778 ID=rna8778|Name=rna8778|organism=Nannochloropsis gaditana|type=CDS|length=1866bp|location=Sequence derived from alignment at KK037250.1:139576..141783+ (Nannochloropsis gaditana)
ATGCTGTTGCAAAAAGGAGTACTGGTGAGCTGTTTGCTCACTTGCGCAGT
TGCCTATGTACCGCCCATGCGTGGTCCTCGTAGTACGGCAGTATCAAAGT
CAGTCAAGTTGCGTCTCTATGCCTCGGGGCCCGAGGCTCCTGGAGGCTCG
CAACTGGTGccggaggacgatgaggagatGACGGAGGGATTCACTGAGAT
AGACGGCGTCGTGTTCGAGGGCGATTTTGAGGATGACTCGGTCAAGCCTT
CGTTGACATCCTTGCTAGAGGATGTAGCCGATGATGGGAGCGAGGCATTC
AAGTTGGATTCCGAcgactccttcttctccatccccgaCTACGTGCCCTC
CGAGCTCCCGGACCTGGCAGCTCTCGGATCAGGACTGGAGAGCAAGCGGG
ACATGATGAATGAGTTCGTTGAGGGCGGAGAATTCGACCCGAATGACGAG
AAAATGTATCGGCTGCTTGGCTTGGACGCGCTCGACGAGAAGAAGACCCG
CAAGAGTCCCGAGGACTTCACCCTTCCTGGTGGCTACCTTCTCGAGCAGG
CTCGCCTTGAGGTCGCACAGAAATACCAGAAGCATGACAAGGATGTGGGC
TCATCTGCTGTACAGGTGGCACAATTCACACAGACGATCAGCTACTTGAC
CAAGCACGTGCAAGTGAATCCCCGAGACTACTCCGCCCGACGGGGCCTGA
TTCGGGCCGTGAACATACGCCGGAAGCTCTTGAACTACATCTCGAAGAGG
AACAAGCCATTTGCACTCAAGCTGGCTGCTGAACTGGGAATCCGCTTCCG
CCCACCTGATGGCGCGCGATCTAAGTTTGAAATGTATCGTTTCTACAAAA
ATACGAAGAGCAAGAAGGCCAAGAATATGCAGTCCATTGCGGACCTGAAG
GCAGCTGCCGAGGCTCAGGGTGTGAATGCATGAATGCTGTTGCAAAAAGG
AGTACTGGTGAGCTGTTTGCTCACTTGCGCAGTTGCCTATGTACCGCCCA
TGCGTGGTCCTCGTAGTACGGCAGTATCAAAGTCAGTCAAGTTGCGTCTC
TATGCCTCGGGGCCCGAGGCTCCTGGAGGCTCGCAACTGGTGccggagga
cgatgaggagatGACGGAGGGATTCACTGAGATAGACGGCGTCGTGTTCG
AGGGCGATTTTGAGGATGACTCGGTCAAGCCTTCGTTGACATCCTTGCTA
GAGGATGTAGCCGATGATGGGAGCGAGGCATTCAAGTTGGATTCCGAcga
ctccttcttctccatccccgaCTACGTGCCCTCCGAGCTCCCGGACCTGG
CAGCTCTCGGATCAGGACTGGAGAGCAAGCGGGACATGATGAATGAGTTC
GTTGAGGGCGGAGAATTCGACCCGAATGACGAGAAAATGTATCGGCTGCT
TGGCTTGGACGCGCTCGACGAGAAGAAGACCCGCAAGAGTCCCGAGGACT
TCACCCTTCCTGGTGGCTACCTTCTCGAGCAGGCTCGCCTTGAGGTCGCA
CAGAAATACCAGAAGCATGACAAGGATGTGGGCTCATCTGCTGTACAGGT
GGCACAATTCACACAGACGATCAGCTACTTGACCAAGCACGTGCAAGTGA
ATCCCCGAGACTACTCCGCCCGACGGGGCCTGATTCGGGCCGTGAACATA
CGCCGGAAGCTCTTGAACTACATCTCGAAGAGGAACAAGCCATTTGCACT
CAAGCTGGCTGCTGAACTGGGAATCCGCTTCCGCCCACCTGATGGCGCGC
GATCTAAGTTTGAAATGTATCGTTTCTACAAAAATACGAAGAGCAAGAAG
GCCAAGAATATGCAGTCCATTGCGGACCTGAAGGCAGCTGCCGAGGCTCA
GGGTGTGAATGCATGA
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Synonyms
Publications