rna8769, rna8769 (mRNA) Nannochloropsis gaditana

Overview
Namerna8769
Unique Namerna8769
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1424
Alignment locationKK037250.1:121912..122297 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100220g7.7211.mrna
Orig protein idgnl|cribi|Naga_100220g7.7211
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:121912..122297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100220g7gene8501Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8769rna8769-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21936.1cds8739Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8769 ID=rna8769|Name=rna8769|organism=Nannochloropsis gaditana|type=mRNA|length=1424bp
GCGTGCAAGCACAGAGCGAGGAGCACAGACATTAGGGAAGATATCGGGGT
CTTGTCTCCTGTGATTCTCCCGATGGCCGACTCAGATGTAGTCAGGCTCG
CATAAATTGGGTAACAGGTTGTTTCGCGCAGACTTTGGCTGCTAAATACG
ATGTCGTTGTAGATCTTGCCTTCACTGTCCTTGCCTGAGCTCGTAGACGC
GTCGCGCATCATCTTAAGAGGGTTAATACAAGAAAATGTCCCCACAGGAA
GCCGCAATCCTTTTCATTGGACCAAAATATTATGCTTACATCCCGTTTCT
CGCCAGCCAGAAGGATGTCGAGGGGTCGTGGACAACGCGGCCAAAATGCA
GCATCAGCATTCTTGACGTGCGTCGCCCTCTTCCCCCTGTTAGCGCACGC
TTTTCTCCCCGCTACATTCAAGCCCTTCCGCGCGTACTCAGACGCTTCTT
CGACCCTTGTCGTTCCACTTTCTCGTACGTCAACTGACACAATCACTTCA
CCATTTGAGTCTGGCGTTAAGCAGGGTGGAGGGGACGATGGTCCTTTGCC
GCTGACGCTTGAGAATGTGGAGATGGTGCTGGACGAGATGCGACCTTATT
TGATGTCAGACGGGGGTAATGTGGTGGTTTCCGATATCGACGGTCCCGTT
GTAAAGCTGGAGCTTCAAGGTGCGTGTGGAAGCTGCCCGTCCTCGACCAT
GACCATGAAAATGGGCCTGGAGCGTCGCCTTAAAGAGAAAATTCCGGAGA
TCAGTGAGGTGATTCAAGCAATGCCCGAGGGCCCAGCACTTTCTACAGAG
AACATTGACCAGGTCTTGGAGGGCGTTCGTCCTTTCCTGATGGTGGCGGG
AGGGTCAATATCTGTCAAGGAGATTTCTGGCTTAGGAGGACTTCAGCCAC
TTGTGTTGCTTCACATGGAAGGCAACAATCAAAGTCTTTTTTCCGTTCGA
ATGGAGATAACACAAAGAATATTGCGAAATTTTATGGTGCCGGGATTGCG
CGTGGAGTGGACGGATCAGGTGTCGTAAAAGAGAATTAGGCGCGCAGGAA
GAGCGGAAGAGAAGGCGCGGTGCTGTTTATCGAGCTGAAAATGAAGAAAA
TTGCACTCGAGCGTGCGCAAACCTCGACTAGAGCGTACCGTTTTGTGTAT
GTCGTGGTGGCAACCACTTGATTCGCCTCTAAGATGCTAAATTGATGCGA
ACTTTTGACCAAGAAAAAAACGCAAGATCTGATGAAATAAGTCATCCTGA
GGAAACCTCTGAGAGGGAGTCGATAAATGGTGAAAAGGTGCTACAGGTGT
GTGCGATGACATGTAAAGTTGGTACTTGGAAGAGGGAAAATAAAAACAAA
AGCTCAGTTTCAAAACGCGGTCTCATATCGCCTAAGAATGAACCCGGTAT
AGTAGGCGTGGTGGTAGATATTCT
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protein sequence of rna8769

>rna8769-protein ID=rna8769-protein|Name=rna8769|organism=Nannochloropsis gaditana|type=polypeptide|length=78bp
MLASSQWIFYSYAKKRRTWSKAVSYIVVSSKQKFMYLNIEQRVVPRLNHE
ISLVKCLMFSKQNEAARKCTAFFHSLIY
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mRNA from alignment at KK037250.1:121912..122297+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8769 ID=rna8769|Name=rna8769|organism=Nannochloropsis gaditana|type=mRNA|length=386bp|location=Sequence derived from alignment at KK037250.1:121912..122297+ (Nannochloropsis gaditana)
ATGCTGGCTTCTTCTCAATGGATATTTTATTCATATGCGGTCTCGGCTTC
TCTAACCTCCCCTCATGATAGATAGGAAGTTACTTTTCAAGCCGTGAACA
AAAGTGCGTGGCCACAAGTGGATAGCAGTGGTTTAGAAGAGCGTGTAAAT
GACTTGGGCTTTGCTCTATGGTGCGCCTTTTTTAGTAGAAAAAGAGACGA
ACCTGGTCAAAAGCAGTTTCCTACATAGTGGTGTCTTCAAAACAAAAATT
CATGTATTTAAACATCGAACAACGAGTAGTCCCCAGGCTGAATCACGAGA
TCAGCCTTGTGAAATGTTTGATGTTCAGCAAGCAAAATGAAGCAGCACGA
AAATGTACTGCCTTCTTTCATTCACTCATTTACTGA
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Coding sequence (CDS) from alignment at KK037250.1:121912..122297+

>rna8769 ID=rna8769|Name=rna8769|organism=Nannochloropsis gaditana|type=CDS|length=474bp|location=Sequence derived from alignment at KK037250.1:121912..122297+ (Nannochloropsis gaditana)
ATGCTGGCTTCTTCTCAATGGATATTTTATTCATATGCGAAAAAGAGACG
AACCTGGTCAAAAGCAGTTTCCTACATAGTGGTGTCTTCAAAACAAAAAT
TCATGTATTTAAACATCGAACAACGAGTAGTCCCCAGGCTGAATCACGAG
ATCAGCCTTGTGAAATGTTTGATGTTCAGCAAGCAAAATGAAGCAGCACG
AAAATGTACTGCCTTCTTTCATTCACTCATTTACTGAATGCTGGCTTCTT
CTCAATGGATATTTTATTCATATGCGAAAAAGAGACGAACCTGGTCAAAA
GCAGTTTCCTACATAGTGGTGTCTTCAAAACAAAAATTCATGTATTTAAA
CATCGAACAACGAGTAGTCCCCAGGCTGAATCACGAGATCAGCCTTGTGA
AATGTTTGATGTTCAGCAAGCAAAATGAAGCAGCACGAAAATGTACTGCC
TTCTTTCATTCACTCATTTACTGA
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Synonyms
Publications