rna8761, rna8761 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8761
Unique Name	rna8761
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2683
Alignment location	KK037250.1:101617..104214 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100157g14.48.mrna
Orig protein id	gnl\|cribi\|Naga_100157g14.48
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:101617..104214 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100157g14	gene8493	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8761	rna8761-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21945.1	cds8731	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:101617..104214+
coding sequence from alignment at KK037250.1:101617..104214+

mRNA sequence

>rna8761 ID=rna8761|Name=rna8761|organism=Nannochloropsis gaditana|type=mRNA|length=2683bp
ACATTAGCGGGCGTCAGAGGCGTTACCGAGGTTGCCAGAGGCTGTCGCTG
AAGCGGCTTGGGGCAGAAAAAGAGACCCCGGACACTCGACCACCCACGTC
GCATTCCATTTTGAGGAAGGAGGGAGGGTGTGGGTGGACAACACATGGAA
TGGTAGCTTTATTGTGGGTTTCACTTGAATTTTGGTCCCTGAAGCCTGCT
AATTAATTGCGCTGCTAGCTCTGCAGCAGCCTTCCTCAAGCCAAGCCGAC
CTTGAAGGCAATTTCGCTTACCTTTCCATCCCACCTATTCTTTCAGGCCC
CAGTGAACCACACGGTTTTAGCCTACCTTTAGAAAAGCATTACTTTTTTT
CATAAGTCAGCGTCGAGTGGTGAAAAGTCTTTCTTAGGATTGGTCATATT
CTTAAAGCAGCTCTCCCGAATTTTGAACTCAGACTTTGACTTTCCCGCAT
ACAGGCAGGTGCATGTCCGACCATGCCCTCCATTCTGACCCATCGCAGAG
GTCTCAATGATCGATTCCAGTCGTCCGTAGCTGATGAAAATACGCCTGCC
ATGGCCACTGGGCGTTCAAGACTTCCTTCTCCCGAGGCCCCGAGCAGGAA
GATATGTCGCGTCTGCTTCGAGTCCACACGGCCGGAAACTCTCATCTCTC
CCTGTCGGTGCTCCGGAACCCAATCATACATCCATCTTCGCTGCCTCCGT
CGCTGGCAACGCAGCGCCATGGCATCCACGAACCCTCTGCGGGCTTTCAC
TTGCGGGGTGTGCGCTGCCAGCTACACAGACTTGTATTCTCTTGTCCACC
CCCCCGTGACCCGAAGGGCTGTGCCTGGAGGCGCCGCGAGCATGCCTCAG
GGCCAGGGGCCAGCGGACGCGGCGGCACGAGGGAGGGCAGGAGCACAGGA
GGCGCCGTGGGGGGCATTGCCGGTGGTGGAGGCGCGCATGGGTCTTAGCG
AGGTGGTGCACAAGGCCGTCTTGGGGGCCTCTGTGGCCCTGGAGTCCGCC
GCCTCCCCCTCCTGGCTCCTGAAGCTCCTCATCCTCCTCGCCCTCTCCTG
CCTCGTCCCCTGCTTCGTCCTTGTCTACTGGGCCGTCCTCGCTTTCTCCT
ACCTGCCCTCCCCCTTCCTCCTCCCCCCCGACCACCCCCTGGAGCATCCC
CCCCACCCCGCCCGCCCCCGCCCGGCCCATCCTCGCGCCCTGACCCCGGG
CAGCTTCCTGCTCGCCAGCGAGAAGATCGGATCGGGCTCCCTCTTCCACC
GGTCTTTGATCCTCCTCCTCGAGCACGGTCCGCAGGGTTCGCGCGGGCTG
GTGGTGAACAAGCGCCTGAGGGACACGGCCGTGGGCGGGCGGCTGGGGCG
ACGGCTCTCTCTGAGCGAGCTGGCGAGGCCTGGGGGGAGGGGTCGGCGCA
GTTCTCTGGCAAGGGAGGGCGACGTTGGGGAGATGGCAGCTCTCGCCGGG
CGCCTCCCGCCCTGGGACCTCCTTTGCGGGGGACCCGTCCAGCCCCATGT
CCTCCTCGTCCTCCACGATCGCCCACCGGGAGGGGAGGGCGGGAGGGAGG
GCGGGAGGGAGGGCGCGAGGGAGGTCGGGGTGGGCACGGGCGTCTATGTG
GTGGAGGAGAGCGGGCGGGCGCTGGAAGCCTTGGAGAGGGCCTCTGTCCC
CTCGGGCGTCGCCCCTGCCTCCTTGGCCTCCCCACGCGCCTCCGAGGAAG
AGGAGGAGGAGGAGGAGGAGGAGGCAGGGGGAGGGGGGCGAGGGCGGGCG
AAAGCCTTCTTTGGTTACGCGGGGTGGGGCCCGGGGCAGCTTCTGGAGGA
GGTGAAGCGTGGAGAGTGGTTCGTGCTGGGGATGGACGCTGAGATGACGT
CCGAGCTGGTGTTGGGCTTGGCGCTGGAGGAGGACGGGGAGGAGGGGGAG
GGAGGGGGAGGGGTACAGGTATGGGAAGATCTGATGACTGCGCTGGTGCG
ACGGCAGGAGGATTGACGGGAGGGAAGGAGGACCGGAGGGAGGGAGAGAG
GGGGCAGGGAACGAAAAGAGGGAAGGAACAACTTCTCTCCAGTCTGTCGC
ATGTAATTACTCCATGAGTGATGTTTATTCCGAACTTGTGCATACACATA
TATAACCCGTCCTGTACATGAAAAAAATGCAGCTCGGACGGCCCCAGGTC
CGTGAAAGAGGGCAATCCCACCCGCAAACGAGCAGCTTCTTGAGGGTGCT
TGGGAGAGCCATCGAGTTACGGGGGGAAAGTGGTCGTTCTTGAGAGGCGG
GAGGGAAGCAAGGGAAGGGGGTGTGCGGACGATGAAAGGGTCCGGGCAGG
CATGTCTCGAAGGGCCGAAAGAGGCAGGGAGGGGCCACCGACACCCGGGT
TTAGTGTGCAAAGAGAGGGAAGTGTAAAGACTGGATCACAAAAGGCGCTC
TAGGCTGCGCGCAGATGCAGGGATTAGGGAACAATGAATCAATCACTTTG
TCGCTGTGACCACATGAATGGAGCTCACTCTCTCGGGGGGTCAGGACAGG
ATTGAGGAGCGCAGATAAAGGGACCGCTCTGGCTCTCGTTCTCCGTCCCC
ACCTCTACCGGCAGTGAGGGAATGGCAGGGCATCAAGACTCTGGCATACT
CGCTGACAACGAGGGGAAACATCCCTGAAGGGAGGGACGGGTGCCGTGGG
AGGAGGGAAAACGGCAAGCAAACCAGAGACTGA

protein sequence of rna8761

>rna8761-protein ID=rna8761-protein|Name=rna8761|organism=Nannochloropsis gaditana|type=polypeptide|length=569bp
MRNDRAENFDVASPPRFTASRHFTNRALHHTATTTSYRMTNSTEVTETPA
AAEAEEAVPKAPKATPSTTPARPDRRALDKAVSALQSEIDSLNEQIAGYD
KQIEEVKKKIDVAMAARSGEQDELSKERAKRDAIKAELDKLKGEKDALSS
EFDRLKGKLDSAMDASKSAKSQMKFRTVEEINAEMARLNKLQSTTSMVLS
EEKKLVKELESLRAQKRQLSALGASEGLIKNDKEERARLQASLKAKRDEV
NECFGRLTAQREVCDKVQAKENGGEGGKKGLIPTLHDQRNAIWKKKSEAI
TQIKALREQVKEKWEEFKGARKEWEAHMEEERKVREAERKARQEEWERKM
EEEEAKKVPYEEEMALCDYLVNYLKQNFLTEKEEPVVAAAGPTTPAAAFE
HEGMTLQAFRREDEEEEQWAGGKKKKEKKQGGEGGRKGKGGGKKDTLAHS
PELLASFALLKLDAPSKATGVEAAVVALKEKKEWYSVQPRPVKKKAAKTE
EGAGAEGEEAVKEEGGAGDAGANRGKGGRGEGGKGKGKGEKKQPKEFKRS
EDDFPSLGAAMAAPAVARA

mRNA from alignment at KK037250.1:101617..104214+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8761 ID=rna8761|Name=rna8761|organism=Nannochloropsis gaditana|type=mRNA|length=2598bp|location=Sequence derived from alignment at KK037250.1:101617..104214+ (Nannochloropsis gaditana)
GTGTGGCACGCGCTGGTGTTTGTGCATGAATGTGGTGCTTACATGGCGCT
GGGACCGACGACTCACGAAAGCCGCCCTCAGCACCACTCACTgcgtcctt
cttcttgtcttcctctttctgcccccccgtgccctcctgccttcacTTGA
GTCCGACGCTTGCTtgcgcctccatggccgTTTTGTGATCCTTTAGAAGA
CATTGCTTCCCACAAAGCATTGCGCGATGTTTACAAGGCTGTTGTCCTGG
CACTTCTCAGGAGACATTCCTAGTGATGAGGAATGACCGAGCAGAGAACT
TCGACGTAGCATCACCACCACGATTCACAGCCTCCCGACACTTCACTAAT
AGGGCGTTGCACCACACAGCGACGACAACAAGCTACAGAATGACCAACTC
CACCGAGGTGACAGAGACGCCCGCTGCGGCCGAGGCCGAAGAGGCGGTTC
CCAAGGTGGGTTTGAATTCTCCTGCGGTTTTCGCGGCCCTCTGCAGCCCA
CCGAGCCGTCAACTCATGCCCGACAACCCCACCCTTTCCATGTCAGGCAC
CCAAGGCTACACCCTCCACGactcccgcccgcccggaTAGGCGGGCTCTG
GACAAGGCGGTTTCTGCGCTTCAGTCGGAAATCGATTCCTTGAACGAGCA
GATCGCGGGCTACGACAAGCAGAtagaggaggtgaagaaaaaaattgacg
tggccatggccgcgCGTTCAGGAGAACAAGACGAGCTGAGCAAGGAACGT
GCCAAGCGGGATGCTATCAAGGCGGAGCTGGACAAATtgaagggcgagaa
ggacgcTCTCTCCAGCGAGTTCGACCGACTAAAAGGCAAACTCGACTCGG
CCATGGACGCGAGCAAGAGCGCCAAGTCTCAGATGAAGTTCCgcacggtg
gaggagatcaacGCAGAGATGGCTCGTCTGAACAAGCTGCAGAGCACCAC
TAGCATGGTCCTGTCGGAAGAGAAGAAGCTGGtgaaggagctggagagCC
TGCGCGCGCAGAAGCGGCAGCTCTCCGCCTTGGGGGCCTCGGAGGGTCTG
ATCAAGAatgacaaggaggagcgcgCCCGGCTGCAGGCATCAttgaaggc
gaagagggacgAGGTCAACGAGTGCTTCGGTCGGCTCACGGCGCAGCGGG
AGGTGTGCGACAAAGTGCAGGCCAAGGAgaacgggggggagggcgggaag
aagggcttGATCCCCACCCTGCACGACCAGCGGAACGCGatctggaagaa
gaaatcGGAGGCGATCACGCAGATTAAGGCGCTGCGGGAGCaggtgaagg
agaagtggGAGGAGTTCAAAGGCGCGCGcaaggagtgggaggcccacatg
gaggaggagaggaaagtgcgggaggcggagcgcaaggcgcggcaggagga
atgggagaggaagatggaggaagaggaggccaagaaggtgccctacgagg
aggagatggcgctCTGCGACTACTTGGTGAACTACTTGAAGCAGAACTTC
CTGactgagaaggaagagccggtggtggcggcggcgggcccCACCACCCC
GGCCGCCGCGTTCGAGCATGAGGGGATGACGTTGCAGGCgttcaggaggg
aggacgaggaggaggaacagtgggcggggggcaagaagaagaaggagaag
aagcagggcggggaggggggtaggaaagggaaggggggcgggaagaagga
tacGCTGGCGCACTCCCCGGAGCTCCTCGCCTCGTTTGCTCTCCTCAAGC
TGGACGCACCCAGCAAGGCGACAGGCGTGGAAGCAGCGGTCGTGGCtttg
aaggagaagaaggaatggTACTCGGTGCAGCCCCGACctgtgaagaagaa
ggcggccaagacggaggagggcgcaggggcggagggggaggaggcggtca
aagaggagggaggggcgggggacgcgggggcgaacaggggcaagggcggg
aggggagagggggggaaggggaaggggaagggtgaGAAGAAGCAGCCCAA
AGAGTTCAAGCGCTCGGAGGAcgactttccttccctgggGGCCGCAATGG
CGGCGCCGGCGGTGGCGCGAGCGTAGGCTTGAGTCTGGGGGGGGGTTACT
AGGGGAGTTGTGGTTTGATTTTAGTTCTTTCAGTTCTGTGTgtgagaaga
agaggaaatgggAGGTAAAAGGGcatcgagggcggggccaggaggttgtG
GGCGTCGCGCctaggaggggggatgggagggcgatggagtgggaggagga
gagaaggtgggaaagaagTGCATGAGCACCCAGGCCTAGATGGAGGGTAG
ATGGGCAGACCCCGAAATgctggggggaggaataGGTAGAAGACGTGgtt
gaggaggtggagggccagcacagggagcagggaaacGAGGGGAAGCTTTC
GAGAGGGTGGCGGCCATCAAGGGGCTCGCCGTGATCAGGAACGGGAGCga
gagaggtgagggagaCGGCGCGCATGGAGCAGTGTGGAGGGAGGTTAATG
TGAGAAGTAGGAGCTTTGAGGCCATGAGACGCGCTGTTAGGGCACGTCGC
AGGGGTCCCAAGGCGTTCGGCACggggcgagaagaaggaaaaaggggg

Coding sequence (CDS) from alignment at KK037250.1:101617..104214+

>rna8761 ID=rna8761|Name=rna8761|organism=Nannochloropsis gaditana|type=CDS|length=3420bp|location=Sequence derived from alignment at KK037250.1:101617..104214+ (Nannochloropsis gaditana)
ATGAGGAATGACCGAGCAGAGAACTTCGACGTAGCATCACCACCACGATT
CACAGCCTCCCGACACTTCACTAATAGGGCGTTGCACCACACAGCGACGA
CAACAAGCTACAGAATGACCAACTCCACCGAGGTGACAGAGACGCCCGCT
GCGGCCGAGGCCGAAGAGGCGGTTCCCAAGGCACCCAAGGCTACACCCTC
CACGactcccgcccgcccggaTAGGCGGGCTCTGGACAAGGCGGTTTCTG
CGCTTCAGTCGGAAATCGATTCCTTGAACGAGCAGATCGCGGGCTACGAC
AAGCAGAtagaggaggtgaagaaaaaaattgacgtggccatggccgcgCG
TTCAGGAGAACAAGACGAGCTGAGCAAGGAACGTGCCAAGCGGGATGCTA
TCAAGGCGGAGCTGGACAAATtgaagggcgagaaggacgcTCTCTCCAGC
GAGTTCGACCGACTAAAAGGCAAACTCGACTCGGCCATGGACGCGAGCAA
GAGCGCCAAGTCTCAGATGAAGTTCCgcacggtggaggagatcaacGCAG
AGATGGCTCGTCTGAACAAGCTGCAGAGCACCACTAGCATGGTCCTGTCG
GAAGAGAAGAAGCTGGtgaaggagctggagagCCTGCGCGCGCAGAAGCG
GCAGCTCTCCGCCTTGGGGGCCTCGGAGGGTCTGATCAAGAatgacaagg
aggagcgcgCCCGGCTGCAGGCATCAttgaaggcgaagagggacgAGGTC
AACGAGTGCTTCGGTCGGCTCACGGCGCAGCGGGAGGTGTGCGACAAAGT
GCAGGCCAAGGAgaacgggggggagggcgggaagaagggcttGATCCCCA
CCCTGCACGACCAGCGGAACGCGatctggaagaagaaatcGGAGGCGATC
ACGCAGATTAAGGCGCTGCGGGAGCaggtgaaggagaagtggGAGGAGTT
CAAAGGCGCGCGcaaggagtgggaggcccacatggaggaggagaggaaag
tgcgggaggcggagcgcaaggcgcggcaggaggaatgggagaggaagatg
gaggaagaggaggccaagaaggtgccctacgaggaggagatggcgctCTG
CGACTACTTGGTGAACTACTTGAAGCAGAACTTCCTGactgagaaggaag
agccggtggtggcggcggcgggcccCACCACCCCGGCCGCCGCGTTCGAG
CATGAGGGGATGACGTTGCAGGCgttcaggagggaggacgaggaggagga
acagtgggcggggggcaagaagaagaaggagaagaagcagggcggggagg
ggggtaggaaagggaaggggggcgggaagaaggatacGCTGGCGCACTCC
CCGGAGCTCCTCGCCTCGTTTGCTCTCCTCAAGCTGGACGCACCCAGCAA
GGCGACAGGCGTGGAAGCAGCGGTCGTGGCtttgaaggagaagaaggaat
ggTACTCGGTGCAGCCCCGACctgtgaagaagaaggcggccaagacggag
gagggcgcaggggcggagggggaggaggcggtcaaagaggagggaggggc
gggggacgcgggggcgaacaggggcaagggcgggaggggagaggggggga
aggggaaggggaagggtgaGAAGAAGCAGCCCAAAGAGTTCAAGCGCTCG
GAGGAcgactttccttccctgggGGCCGCAATGGCGGCGCCGGCGGTGGC
GCGAGCGTAGATGAGGAATGACCGAGCAGAGAACTTCGACGTAGCATCAC
CACCACGATTCACAGCCTCCCGACACTTCACTAATAGGGCGTTGCACCAC
ACAGCGACGACAACAAGCTACAGAATGACCAACTCCACCGAGGTGACAGA
GACGCCCGCTGCGGCCGAGGCCGAAGAGGCGGTTCCCAAGGCACCCAAGG
CTACACCCTCCACGactcccgcccgcccggaTAGGCGGGCTCTGGACAAG
GCGGTTTCTGCGCTTCAGTCGGAAATCGATTCCTTGAACGAGCAGATCGC
GGGCTACGACAAGCAGAtagaggaggtgaagaaaaaaattgacgtggcca
tggccgcgCGTTCAGGAGAACAAGACGAGCTGAGCAAGGAACGTGCCAAG
CGGGATGCTATCAAGGCGGAGCTGGACAAATtgaagggcgagaaggacgc
TCTCTCCAGCGAGTTCGACCGACTAAAAGGCAAACTCGACTCGGCCATGG
ACGCGAGCAAGAGCGCCAAGTCTCAGATGAAGTTCCgcacggtggaggag
atcaacGCAGAGATGGCTCGTCTGAACAAGCTGCAGAGCACCACTAGCAT
GGTCCTGTCGGAAGAGAAGAAGCTGGtgaaggagctggagagCCTGCGCG
CGCAGAAGCGGCAGCTCTCCGCCTTGGGGGCCTCGGAGGGTCTGATCAAG
AatgacaaggaggagcgcgCCCGGCTGCAGGCATCAttgaaggcgaagag
ggacgAGGTCAACGAGTGCTTCGGTCGGCTCACGGCGCAGCGGGAGGTGT
GCGACAAAGTGCAGGCCAAGGAgaacgggggggagggcgggaagaagggc
ttGATCCCCACCCTGCACGACCAGCGGAACGCGatctggaagaagaaatc
GGAGGCGATCACGCAGATTAAGGCGCTGCGGGAGCaggtgaaggagaagt
ggGAGGAGTTCAAAGGCGCGCGcaaggagtgggaggcccacatggaggag
gagaggaaagtgcgggaggcggagcgcaaggcgcggcaggaggaatggga
gaggaagatggaggaagaggaggccaagaaggtgccctacgaggaggaga
tggcgctCTGCGACTACTTGGTGAACTACTTGAAGCAGAACTTCCTGact
gagaaggaagagccggtggtggcggcggcgggcccCACCACCCCGGCCGC
CGCGTTCGAGCATGAGGGGATGACGTTGCAGGCgttcaggagggaggacg
aggaggaggaacagtgggcggggggcaagaagaagaaggagaagaagcag
ggcggggaggggggtaggaaagggaaggggggcgggaagaaggatacGCT
GGCGCACTCCCCGGAGCTCCTCGCCTCGTTTGCTCTCCTCAAGCTGGACG
CACCCAGCAAGGCGACAGGCGTGGAAGCAGCGGTCGTGGCtttgaaggag
aagaaggaatggTACTCGGTGCAGCCCCGACctgtgaagaagaaggcggc
caagacggaggagggcgcaggggcggagggggaggaggcggtcaaagagg
agggaggggcgggggacgcgggggcgaacaggggcaagggcgggagggga
gagggggggaaggggaaggggaagggtgaGAAGAAGCAGCCCAAAGAGTT
CAAGCGCTCGGAGGAcgactttccttccctgggGGCCGCAATGGCGGCGC
CGGCGGTGGCGCGAGCGTAG

Synonyms

Publications