rna876, rna876 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna876
Unique Name	rna876
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1330
Alignment location	CM002456.1:623081..625603 -

Link to JBrowse

Properties


Property Name	Value
Product	Mitochodrial transcription termination factor
Orig transcript id	gnl\|cribi\|Naga_100017g68.330.mrna
Orig protein id	gnl\|cribi\|Naga_100017g68.330
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:623081..625603 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100017g68	gene839	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29832.1	cds876	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna876	rna876-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:623081..625603-
coding sequence from alignment at CM002456.1:623081..625603-

mRNA sequence

>rna876 ID=rna876|Name=rna876|organism=Nannochloropsis gaditana|type=mRNA|length=1330bp
ACAGCAAGCGCGTTGCCCACGGGTGACTAGTTTCCCCGTCACTTTCATCA
CTCTCAATCGTTCATCGTGGCGTGGTGTCTATAAAAGTGCAACATCGAAT
GAGGATTCCTCAAAAACCCAACTCATGTCTATCTCTTGCGCAAAGGCACA
TGTTTCTTACCGGTACGTCTTTTTAACCTCCTCATCTTCTTCTAAATCTC
TTTCATGGAAAAAGAAGAAGCTACGCCTCGAAAGGAGCAATGAAGAGTCC
TGAATCGGAAAACAAAATCTGATCTTGAGGATATAGCACGATTGAGAAGT
ACCGGTGCATGCATGGAATGCTCGCCCCCTAGCCAATCGAAGAGCCCCCG
TCCAACTGAGCCCCCTTTGCTCCTGTATGGGGCTGCAAGCGTTGTGGGCT
TGCTCACCCTAGGTTCCCTGCCCTTCTTAGTCATTCCTATGCTCAGAGGG
AATGCGTTACCATACATGAACATCCCCATGTCAAAATACAAAACTATTTT
CGATGAAGTGCTCCCTCGTCACATGCCGCGCAGGCGTGCAGGAAGTCCGC
CATTGCGCTTCATTGACCTGGGGCACGGCATGGGAGAGGCTGTGGTCAAT
GCTGCACAGCGAGGATACATAGCAACGGGTGTAGAGCTTAACCCGACCCT
CTACCTGCTATCCATCTGCAATGTCTGGCGGCATGGACTTTTGTGGCCGT
TGGAGCCGCGAGTAAGGCTGGTTTACGGGAACATGTGGAGAAAGGACATG
GAGTTGGGGAGACAGGACGTCATCCTTATGTTTGGAGTGCAGAGCTTGAT
GACCCGTTTGGCAGAAAGGCTTCGATCCGAGGCGCAGCATGATGCGTTGG
TGGTCCTATATCGGTTCAAGCTTGACCTGCGGTCGCGGGCGTCGCCTACA
GGGGCCGCATTGCGAGAGATCACCGGAAGGGACGGGAGTGACGAGCAAGC
GGAGATTAAAATTCTTGAAGTGACTGAGGATGGATTTTCTGTTTATCGCA
TCAAGAAAAAGTAGCCAGCTGCAGGCAATGGGAACACGTGAACACGAAGT
CAAAAGCAGTTAGAACCACTCATTATGCCAGCGACAAGCAAACAAGCTTC
ATTCATGTGTTGCGCAAAGAGGGAGATCTTTTTACATGTGTATGGGCATG
AACATGAAGGTTGTGCTCCAGTAGTCGATCAAATTACTTTACACCATGCG
ACCTTTTATCTGTCACAACTTCTGGCATCCAGATCCAGAGGATCCTGCAC
GTCGAGTATTCATCACCTTACCGATACCGTCACTGGCGTTCCCGCTCCCG
AGACGCGCATCTCAAAAACTGCGTGGCATC

protein sequence of rna876

>rna876-protein ID=rna876-protein|Name=rna876|organism=Nannochloropsis gaditana|type=polypeptide|length=591bp
MALHVHFRSGTRYHPLLLCGLLLIVGTCVRPSDAFTGQSRKFFCQWKECW
KTLSQPCRGMEPAAATTTVSGTPTPEDLIGHATRLQPLAGLAFFPLGLIE
RRLEHLYALFPRENATSMVCRVPDLLCVEPNDLAARVAERQVQLAALLPA
CRPLRLMAKAPILVFQDFDSQIKSTAERLEWELPGMDLARVVCPNPAVLT
RAWDTVLFPQIVALRAIFPQENLGRIIMRRPDLLSRDAAGRLREGMEGLA
RHLPSVKVEMLAARQPDILALEPRQVAARIKHLEALFPAATRAEVAKMIN
RKPSLLLTSVERVLRPKLARLRNILGSAAAQELCQTMPSILSRDLEQVEA
RLKLLRAPVPGQDLVRFLRYNPAFLSSAPGAVGARLTALQSVFPRGVELG
KMLIREPKLYAEDVDVLALKLAEVHAATRLSKEEVVERLRRDARFLLVSY
GRLASRLRFLKALENVGAEPWEWARQGDPGGEGGGEGGVRPSLQRINLGS
MASMPLGRFLHLYPLYPFYLLHELGRSPTPHKEGSNVYHLEEAHSQMLWR
DGGLRDSPVKQINGNGGRPGRPHSIGRKENMGEEKQMPRSF

mRNA from alignment at CM002456.1:623081..625603-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna876 ID=rna876|Name=rna876|organism=Nannochloropsis gaditana|type=mRNA|length=2523bp|location=Sequence derived from alignment at CM002456.1:623081..625603- (Nannochloropsis gaditana)
AACAGGGATAAATGTGCCGACAAGACACCCCCTTCACCCAATTCAGTTAT
CAAACCCTCAGCGCTCGAATAAATCTGTTCAATCGATTAAAAATCTCAGT
GCGTCACCGGAAGCTCCAAAGCAGTGGAAATCCTTGTCATTTTCCCTGAC
TGATGCTTCAACTGAAGTATGATACTGAAGGACATCATTCCAGTACAAGG
GCAGGGCGAAGGAGAGGTTACGTGCGCACGGCTGCACTGAGGCTTTCTAT
GTATCGTACACTAAAGATTTATTTCACATATTCAAATGAGATCCATGCAT
TATTTCATTGCTGAGAACTCGTAGCTCCCAAAACGCTCTATGGCATGTCC
TCGCAGCTGTGAAGTCACGATTTTCACGCGTACGTTGTGCCTTGCTACCT
GTATTTTCTGATGCATTTCAGTCTCTCATATATTCCCATCATTTCACCTT
TTCCACATGACAGAAAAATCGTTCAAGAATGTGTAGACGGTGAGCATGTC
GGACGGTTGCCATGGCCTTACACGTTCATTTTCGCTCTGGCACAAGATAT
CACCCCCTTCTGCTGTGCGGGCTTCTTCTTATAGTGGGCACGTGTGTGAG
GCCCAGCGATGCTTTTACAGGCCAGTCAAGAAAGTTTTTTTGCCAATGGA
AGGAATGTTGGAAAACATTGAGCCAGCCATGTAGAGGGATGGAACCAGCG
GCTGCAACCACTACCGTCTCCGGCACTCCCACCCCAGAGGACTTAATCGG
GCACGCCACTCGTCTCCAACCTCTGGCAGGCCTGGCCTTTTTCCCCCTAG
GGCTAATCGAACGTCGTTTGGAGCATTTGTACGCTCTTTTCCCTCGTGAA
AACGCGACATCCATGGTATGCCGGGTCCCCGATCTTCTGTGTGTCGAGCC
CAACGACCTTGCTGCTCGAGTGGCGGAGCGTCAGGTCCAGTTGGCAGCAT
TACTTCCGGCCTGCCGACCTCTACGTTTGATGGCCAAAGCTCCCATCCTT
GTTTTTCAAGATTTTGATTCTCAAATTAAAAGCACGGCAGAGAGGCTGGA
GTGGGAGCTCCCTGGGATGGATCTGGCGCGAGTGGTCTGCCCTAACCCCG
CCGTCCTCACTCGGGCATGGGACACCGTCCTGTTCCCTCAGATCGTAGCC
CTTCGAGCCATTTTCCCCCAAGAAAATTTGGGGAGGATCATCATGCGTCG
GCCGGACCTCCTGTCTCGCGACGCAGCCGGCAGGCTCAGGGAGGGGATGG
AGGGGTTGGCGCGTCATTTGCCCTCGGTGAAGGTGGAGATGCTCGCGGCT
CGTCAGCCGGACATCCTCGCGCTCGAGCCCCGCCAGGTCGCCGCTCGCAT
CAAGCACTTGGAGGCTCTTTTTCCTGCGGCCACTCGTGCGGAAGTCGCTA
AAATGATCAACCGGAAGCCTTCCTTGCTCCTGACCAGCGTCGAGCGCGTG
CTCAGACCCAAGCTTGCCCGTCTGCGGAACATACTAGGCTCCGCCGCCGC
GCAGGAGCTTTGTCAGACCATGCCCTCAATACTCAGTCGCGATCTGGAGC
AGGTGGAGGCCCGCCTCAAACTGCTCAGGGCCCCGGTGCCGGGCCAGGAC
CTCGTCCGCTTTCTGAGGTACAACCCTGCCTTCCTCTCGAGCGCGCCCGG
TGCAGTCGGCGCCCGGCTCACGGCCCTGCAAAGCGTCTTTCCGCGAGGGG
TGGAACTTGGAAAAATGCTTATCCGGGAGCCCAAGCTTTACGCGGAAGAC
GTGGACGTGCTCGCGTTAAAGCTGGCGGAGGTCCATGCGGCGACAAGACT
GAGCAAAGAGGAGGTTGTAGAGCGCCTGCGACGGGATGCACGCTTTTTGC
TAGTGTCCTACGGGCGTCTGGCGTCCCGCTTGCGCTTTCTGAAGGCGCTT
GAAAATGTTGGAGCGGAGCCGTGGGAGTGGGCGCGGCAAGGGGACCCTGG
GGGGGAAGGAGGGGGGGAAGGAGGAGTCCGACCGTCCTTACAGCGGATCA
ACCTAGGCTCCATGGCCAGCATGCCCCTCGGGAGATTTCTCCACCTGTAC
CCGCTCTATCCCTTCTACCTCTTGCACGAGCTCGGCAGGTCCCCAACCCC
CCATAAGGAGGGCAGCAACGTGTATCACTTAGAGGAGGCACATTCCCAGA
TGCTGTGGCGAGACGGGGGTTTGCGTGACAGCCCCGTGAAGCAAATCAAC
GGCAATGGGGGGCGTCCCGGCCGTCCTCACTCGATTGGGCGTAAGGAAAA
CATGGGGGAAGAGAAGCAGATGCCACGCAGTTTTTGAGATGCGCGTCTCG
GGAGCGGGAACGCCAGTGACGGTATCGGTAAGGTGATGAATACTCGACGT
GCAGGATCCTCTGGATCTGGATGCCAGAAGTTGTGACAGATAAAAGGTCG
CATGGTGTAAAGTAATTTGATCGACTACTGGAGCACAACCTTCATGTTCA
TGCCCATACACATGTAAAAAGATCTCCCTCTTTGCGCAACACATGAATGA
AGCTTGTTTGCTTGTCGCTGGCA

Coding sequence (CDS) from alignment at CM002456.1:623081..625603-

>rna876 ID=rna876|Name=rna876|organism=Nannochloropsis gaditana|type=CDS|length=1776bp|location=Sequence derived from alignment at CM002456.1:623081..625603- (Nannochloropsis gaditana)
ATGGCCTTACACGTTCATTTTCGCTCTGGCACAAGATATCACCCCCTTCT
GCTGTGCGGGCTTCTTCTTATAGTGGGCACGTGTGTGAGGCCCAGCGATG
CTTTTACAGGCCAGTCAAGAAAGTTTTTTTGCCAATGGAAGGAATGTTGG
AAAACATTGAGCCAGCCATGTAGAGGGATGGAACCAGCGGCTGCAACCAC
TACCGTCTCCGGCACTCCCACCCCAGAGGACTTAATCGGGCACGCCACTC
GTCTCCAACCTCTGGCAGGCCTGGCCTTTTTCCCCCTAGGGCTAATCGAA
CGTCGTTTGGAGCATTTGTACGCTCTTTTCCCTCGTGAAAACGCGACATC
CATGGTATGCCGGGTCCCCGATCTTCTGTGTGTCGAGCCCAACGACCTTG
CTGCTCGAGTGGCGGAGCGTCAGGTCCAGTTGGCAGCATTACTTCCGGCC
TGCCGACCTCTACGTTTGATGGCCAAAGCTCCCATCCTTGTTTTTCAAGA
TTTTGATTCTCAAATTAAAAGCACGGCAGAGAGGCTGGAGTGGGAGCTCC
CTGGGATGGATCTGGCGCGAGTGGTCTGCCCTAACCCCGCCGTCCTCACT
CGGGCATGGGACACCGTCCTGTTCCCTCAGATCGTAGCCCTTCGAGCCAT
TTTCCCCCAAGAAAATTTGGGGAGGATCATCATGCGTCGGCCGGACCTCC
TGTCTCGCGACGCAGCCGGCAGGCTCAGGGAGGGGATGGAGGGGTTGGCG
CGTCATTTGCCCTCGGTGAAGGTGGAGATGCTCGCGGCTCGTCAGCCGGA
CATCCTCGCGCTCGAGCCCCGCCAGGTCGCCGCTCGCATCAAGCACTTGG
AGGCTCTTTTTCCTGCGGCCACTCGTGCGGAAGTCGCTAAAATGATCAAC
CGGAAGCCTTCCTTGCTCCTGACCAGCGTCGAGCGCGTGCTCAGACCCAA
GCTTGCCCGTCTGCGGAACATACTAGGCTCCGCCGCCGCGCAGGAGCTTT
GTCAGACCATGCCCTCAATACTCAGTCGCGATCTGGAGCAGGTGGAGGCC
CGCCTCAAACTGCTCAGGGCCCCGGTGCCGGGCCAGGACCTCGTCCGCTT
TCTGAGGTACAACCCTGCCTTCCTCTCGAGCGCGCCCGGTGCAGTCGGCG
CCCGGCTCACGGCCCTGCAAAGCGTCTTTCCGCGAGGGGTGGAACTTGGA
AAAATGCTTATCCGGGAGCCCAAGCTTTACGCGGAAGACGTGGACGTGCT
CGCGTTAAAGCTGGCGGAGGTCCATGCGGCGACAAGACTGAGCAAAGAGG
AGGTTGTAGAGCGCCTGCGACGGGATGCACGCTTTTTGCTAGTGTCCTAC
GGGCGTCTGGCGTCCCGCTTGCGCTTTCTGAAGGCGCTTGAAAATGTTGG
AGCGGAGCCGTGGGAGTGGGCGCGGCAAGGGGACCCTGGGGGGGAAGGAG
GGGGGGAAGGAGGAGTCCGACCGTCCTTACAGCGGATCAACCTAGGCTCC
ATGGCCAGCATGCCCCTCGGGAGATTTCTCCACCTGTACCCGCTCTATCC
CTTCTACCTCTTGCACGAGCTCGGCAGGTCCCCAACCCCCCATAAGGAGG
GCAGCAACGTGTATCACTTAGAGGAGGCACATTCCCAGATGCTGTGGCGA
GACGGGGGTTTGCGTGACAGCCCCGTGAAGCAAATCAACGGCAATGGGGG
GCGTCCCGGCCGTCCTCACTCGATTGGGCGTAAGGAAAACATGGGGGAAG
AGAAGCAGATGCCACGCAGTTTTTGA

Synonyms

Publications