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Properties
| Property Name | Value |
|---|
| Product | fucoxanthin chlorophyll a c binding protein |
| Orig transcript id | gnl|cribi|Naga_100157g5.51.mrna |
| Orig protein id | gnl|cribi|Naga_100157g5.51 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037250.1 | supercontig | KK037250.1:79496..81287 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8753 ID=rna8753|Name=rna8753|organism=Nannochloropsis gaditana|type=mRNA|length=1377bp
ATGCGCCGGCCTTTGTTATTGCCCTCCTTATTGGTGCTCGTCACATCCAG
GACGATCAGATCCATCCCCGGCCCCCCCTTGGCAAAGCCTGCACGGGGTG
TGGCGCTTCTATCATCTGCGTCGTCCCTACCACATCCCTTCTCCACGCTG
GCAGGGACATCAAGGCGAATTTTCATTTCTCGCGCGCGGTTTGACTCTTT
GCCTGGCCATCGCCGGGCTCCCCTCACGGAAAGCTACTTCTACAGGCACG
AGGTACATCGACGCTTCGTCTCCAAGTCCGTGCTTTTCGCTGCCTCCCCC
TCGCCCTCTGCCCTTCCTCCCGCCTCCTCCCTCGATCCCCCCCTTAAGAA
CGCGTGGGGGCAGCGCATCATCCCTCTCAACGACCTTTCCCTCCCGCCTT
CCTCAGCCGTTTTAGACCTGACCGACGATCTCCTCCGTCGAGGGATCCCG
GAGCTCGCGGACATCAAGGAAGGCCTGGTCTTCTTCCAGCTCCAGCAGCC
TCCACACTCAGGACGGGACTCTGCCCGGATTCGGACCGGCTCCTCCCACC
GCTGTGCTGCCACCCGGGAGGACGCAGTCGTGCCCGCGCGAAAGGCCGCC
CTCGACGCCGCCCTTACCTCCCTCGACATCGACCTCCAGGCCCTCAGTCA
AGAAGACCAGGTCACAGGAAGCGGCTCTTCGGCCCTACGCTCCTACTTCT
CTTTCGTGCAGCCCCGCCCCCACAAGCAGCACGCCCCCGTTGACAATGCC
CTGGAGGCCGCCGCACTCCGCGCAGCCAACCAGATCGCCTTCCTAGTCCG
AGCCTACCGGGCCGAGCAGGCGGAGTTCTTGAGGAACCACGACGAGGCCA
TGTCCCGCCTCCAGTCCTTCCCTCGATCCATGCACCCCCTCGTCCTCATC
CTCGACAACGTCCGGAGCGCCTACAACGTGGGCTCGCTATTCCGCACGGC
CGAGACTGCCTTACTTCAAGAGTTGATCACTTGCGGGTTCACCCCCCACC
CACCCCACGAGAAGCTGAAGAAGACAGCCTGCCGGTCTTTGGAAAACGTC
CCTTCGCGCCATTTTTCCACCACCTTGGACGCGGTCAGGACAATGAAGGA
GGAAGGTTTCGTCGTCTTTGCCATGGAAACAACGAGCCGGTCCCAGTGCT
ACACCCATGTTGCCTTCCCGGAGAAAGCAGCCTTGGTTCTAGGCAATGAG
GTAATAGGGGTAGACACAGCTGTCCTCGAGGAGTGTGACGGAGGGATCAT
AGAAATTCCCACATTTGGACAAAAAAATAGTCTGAACGTGGCGAGTGCCG
CGCCGGTAGTGGTCTTTGAAGTGTTGCGCCAATGGGGGACATTTGACAAG
GCAGAAGGCAAAGTCGACAAAACATAA back to topprotein sequence of rna8753 >rna8753-protein ID=rna8753-protein|Name=rna8753|organism=Nannochloropsis gaditana|type=polypeptide|length=226bp
MSHSLLPLFIQSTMRVAAALIATLATASAFLAPASLPSSSSFRRTQGRVS
MDISGIVGSDVEVPEFDPLGLAKNKDEETLGWYRAAELKHGRVCMLASVG
YLVQGLYHLPDGPFEASKPIDALLKVSSERPLAAVQIAIAIAALEVLGAS
IQKYTAPGDLTFDPLGLKPEDPEELAELQLKELKNGRLAMLATAGLAAQE
YVTGQGPVEQLLSGHISPFGDGQGAF back to topmRNA from alignment at KK037250.1:79496..81287+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8753 ID=rna8753|Name=rna8753|organism=Nannochloropsis gaditana|type=mRNA|length=1792bp|location=Sequence derived from alignment at KK037250.1:79496..81287+ (Nannochloropsis gaditana)
GTGAACAAAACCTGACCACCCTGGAAATAAAAACGTGAAGCGGCGCAACT
GGAGCATTTTTGCTATAATGTGTTTGAACTCACATCTTCTCGCCGTTGAG
GCAAGCCTTCGAGCCCACGGTCGTCGCTTTCGGGCCCCGGCAGCAGTGGA
AGACGAAtccttgccgccctcctcgccggcgGACAGCGCTTGCTCCTCTT
TGGAATGCTTGGATGATTTCGATACAAATATCATCGGGAGTAGTGGCCGT
TACtatgcgggaggagaggcctCTGTGACTTCAGAGGGAGTGGTAGATGA
GCGTGCATAAATGACCTCCTATCCCAACCTGTGCGACCTGCCCTCGACGG
GTCGTTGAGGAGTCGAGAGCCGTCCTCTGCACCTATCTCACTTTTGTCCA
GACTCCATCGCGAACGATTGTGACGCAGCGATACAATCATGTGTCTCCTA
CGAGCCTCTTGGACTTGTCTCATATTTCGTATCTCATGGTGCCGTACCGT
CTCGTTCCCTCAAGTCACCCTAGTCTGTTCACGAGATCCATTAGGTCGCC
CGTATGGCCGCAGCCATTTTTTCTCTTGATCGAGTTTACTTTGCGCAAAT
AGGGGCTTTATCGATGTCAATGCAACGTGCACGGCCTCACGTACCcatct
ccgcccccaccttcccacATGTCACACAGCCTACTTCCTCTCTTCATACA
GAGCACCATGCGCGTCGCTGCTGCCCTCATCGCCACCctggccaccgcct
ccgccttcctcgcccccgcctccctcccctcctcctcctccttccgccgc
ACTCAAGGCCGTGTCTCCATGGACATCTCGGGCATCGTGGGCTCCGACGT
GGAGGTGCCGGAATTCGACCCCCTGGGCCTGGCCAAGaacaaggacgagg
aaacgCTGGGCTGGTACCGCGCGGCCGAACTCAAGCACGGGCGTGTGTGC
ATGCTGGCCTCGGTCGGGTACCTCGTCCAGGGGCTGTACCACCTTCCCGA
CGGGCCCTTCGAGGCCTCCAAGCCCATCGACGCCCTGCTCAAGGTCTCAA
GCGAACGCCCGCTGGCCGCCGTGCAGATCgccatcgccatcgccgccctg
GAAGTGCTCGGTGCCTCCATCCAGAAGTACACGGCCCCGGGAGACCTGAC
CTTTGACCCCCTTGGCTTGAAGCCCGAAGACCCTGAGGAGCTCGCGGAGC
TGCAGCTGAAGGAGCTGAAGAACGGGCGGTTGGCCATGTTGGCCACGGCG
GGCTTGGCCGCCCAGGAATACGTGACTGGCCAGGGGCCGGTGGAGCAGCT
GCTCTCGGGCCACATCTCCCCCTTCGGTGACGGCCAAGGGGCGTTCTGAG
CAGCGTCGTAGATGCgtagggggaagggaaggaggggggagggggagact
ACCTGTGTATGGAGAGGGTTCAGGGTGCGTGTGTGTTTGtcagggcggag
gagacgcgaagcggggagggaagacgaggattgCAGGCCTCGAGGAGGCT
GTTGGACCTGGAAAGAGGATAGAGACACCCGTGTTGCTTTTCTCAGGAGA
CCTTCCCGGGGAGAGAATCTCAGCCTTGCCTGCACtgttctttttccctc
gcccgccgTGGGAAAGGGTTGAACCACAACACGAAGAATGAAGCCAAAGG
AAGCACCGTTGTGCCGATCTCCGGGTATGCATCGCCGACAAGATGGCCCT
TATGCCAAGGCTTTCTCGGTCGAGGGGTTCGTTACTTTTTTTCCTGATTA
CGTTACGCATTGCATTGGCCCAGCACGTCTCCATCATGTTTG back to topCoding sequence (CDS) from alignment at KK037250.1:79496..81287+ >rna8753 ID=rna8753|Name=rna8753|organism=Nannochloropsis gaditana|type=CDS|length=681bp|location=Sequence derived from alignment at KK037250.1:79496..81287+ (Nannochloropsis gaditana)
ATGTCACACAGCCTACTTCCTCTCTTCATACAGAGCACCATGCGCGTCGC
TGCTGCCCTCATCGCCACCctggccaccgcctccgccttcctcgcccccg
cctccctcccctcctcctcctccttccgccgcACTCAAGGCCGTGTCTCC
ATGGACATCTCGGGCATCGTGGGCTCCGACGTGGAGGTGCCGGAATTCGA
CCCCCTGGGCCTGGCCAAGaacaaggacgaggaaacgCTGGGCTGGTACC
GCGCGGCCGAACTCAAGCACGGGCGTGTGTGCATGCTGGCCTCGGTCGGG
TACCTCGTCCAGGGGCTGTACCACCTTCCCGACGGGCCCTTCGAGGCCTC
CAAGCCCATCGACGCCCTGCTCAAGGTCTCAAGCGAACGCCCGCTGGCCG
CCGTGCAGATCgccatcgccatcgccgccctgGAAGTGCTCGGTGCCTCC
ATCCAGAAGTACACGGCCCCGGGAGACCTGACCTTTGACCCCCTTGGCTT
GAAGCCCGAAGACCCTGAGGAGCTCGCGGAGCTGCAGCTGAAGGAGCTGA
AGAACGGGCGGTTGGCCATGTTGGCCACGGCGGGCTTGGCCGCCCAGGAA
TACGTGACTGGCCAGGGGCCGGTGGAGCAGCTGCTCTCGGGCCACATCTC
CCCCTTCGGTGACGGCCAAGGGGCGTTCTGA back to top
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