rna8751, rna8751 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8751
Unique Name	rna8751
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1197
Alignment location	KK037250.1:73791..76169 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100157g3.50.mrna
Orig protein id	gnl\|cribi\|Naga_100157g3.50
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:73791..76169 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100157g3	gene8483	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8751	rna8751-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21947.1	cds8721	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:73791..76169-
coding sequence from alignment at KK037250.1:73791..76169-

mRNA sequence

>rna8751 ID=rna8751|Name=rna8751|organism=Nannochloropsis gaditana|type=mRNA|length=1197bp
ATGGTGGAAGTGCCCCCTCCGGCAGCCGCATCTTCAGCGTCCCCTCCCCC
TATTCCCCTTCCTATCGCATCCGTGTCAATCGACCACGCGGGCACCGCAG
CCAAAGCCCATCCTCCTGCCTCTCATTCGACTCCCGGCACAGCTGGCACA
CTCTCCAATGCAAGCAATTCCTCCTGGGTCTGTCCCAGTAATCGAGTGTA
TCCCGGTCTGGTCAATTTATCATCGTCACCTAAATCAGGGGATGCAGCAG
ACACGACAGGGTCTTGCACCGACTCCTCTCAGCCATTCACTCCTTTCTTT
TTCGCCACCTTAGCTGACACGCAATTGGGCGCCATCGAAAACAACACAAG
CTGGGAGGAAGAAAAAGTTCTCTGTCGCATGGCGGTGCAAAAACTCAATA
ATTTGACCCCACGGCCCCAGTTCGCCATCGTCTGCGGGGACCTCGTTCAC
CACTTCCCTTGCATGTACCCCCACACGGACCCTGCCATTCGAGACCGACA
AGTAGCCGACTTCAAGGCCATTTTTAGCGAGGTCCACCCCTCCATCCCCC
TCCTGTGTGTCTGCGGAAATCACGACGTGGGCAACGCTCCCACGCCTTCC
TCCCTCCGGACATTCCAAGAGGACTTTGGCGACGATTACTTCGGCTTCTG
GGTGGGAGGGATGAAGGGTCTCGTCATCAACTCCAATTTGTACTCGGACC
CCTCCCAGGCACAGGATGAGTACGACAAACACCATCGCTGGCTTCACTGT
GAGCTAGCGGCCGCGCGCGCCCTCCGGGCCAAGCACATTCTCCTCTTCGG
CCACCACCCTCTCTTCCTCCACCGCGATGACGAGGAAGACGAGGAAGGCT
ACCTAGGCTCCTCCTCGTTCAGGACCAAAGCGGGGGAGGTAATGACCATC
CCTAATACCTACTTTCATATCCCACGGGCGCGACGAGAGAAGGTTTTGGA
GGCGATGCACCAATTTGGGTGCAGCCATTATTTCTGCGGGCACTGGCATC
AAAACGGGGTTTCTAAAAGTGCGCGATACCAGGTAGAAAACGTCATTACC
AGCGCCGTGGGTTTGCAGATTGGGGAGGATAAAAGCGGCTTTAGACTGGT
GAAGGTCTTCGAGGACGCCGTCGTACACAAGTATTTTAGTTTCGAAGACA
TGCCTGCGCACGTTTTCTTAGATCTGGATCGGAAACATGCTTGGTGA

protein sequence of rna8751

>rna8751-protein ID=rna8751-protein|Name=rna8751|organism=Nannochloropsis gaditana|type=polypeptide|length=291bp
MSPLTQTHRRGIRGGGDRDPLYTLRGFCCFGFLASVLEFSGPASCQKSSF
SSMQGPGRREPDGLALHPSTATNTNGPKESTNDEHFNLLLQIQQLQDKCA
YLAGGTDGVQLAEVLMEKEEECRMKDREIAVLHEKVEGTLGVVAEMEKEK
EVLKGVMRQQESNILDLTQQISTLRRDFTGSESLVASSRQEIAQLQVSLS
ASRANQEAAETATKKADTERRRAEEVITAQELAMEGLLKREKEHQGRKEE
AEVMMTEVRRKGEELERQLAAAKREVRELKEKLKEARLRHA

mRNA from alignment at KK037250.1:73791..76169-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8751 ID=rna8751|Name=rna8751|organism=Nannochloropsis gaditana|type=mRNA|length=2379bp|location=Sequence derived from alignment at KK037250.1:73791..76169- (Nannochloropsis gaditana)
ATGTCTCCATTAACACAAACACATCGAAGAGGCATCAGAGGAGGAGGCGA
CCGTGACCCGCTTTACACGCTGCGAGGCTTCTGCTGCTTCGGTTTCCTGG
CTTCAGTCCTCGAATTCTCTGGCCCCGCGTCCTGTCAAAAGAGCTCATTT
TCGAGCATGCAAGGCCCTGGAAGGAGAGAGCCGGACGGCCTGGCCCTACA
TCCGAGCACCGCCACCAACACAAACGGCCCAAAAGAGTCCACCAACGACG
AGCACTTCAACCTTCTCCTGCAGATACAACAACTGCAGGACAAATGTGCT
TACCTTGCTGGGGGCACTGATGGAGTGCAACTCGCAGAGGTGTTAATGGA
GAAGGAAGAAGAATGTCGCATGAAGGACCGGGAGATCGCGGTCCTACATG
AAAAAGTGGAAGGAACGCTGGGGGTGGTGGCAGAAATGGAGAAAGAGAAG
GAGGTGTTGAAGGGCGTCATGCGTCAGCAAGAAAGCAACATCCTGGACTT
GACTCAACAGGTGCGCCTCATCAGCTTCCATATTATTCGTCCTTATCGCC
GCACGCGCTGTTTCAAATGTGCATCTTCATTTCAAACAGCCACTATCCTT
TCCTCCGTCTTCATCACTGTCTCTATCTCATCAGACCCCATCCCCTCCCT
TCACTTTTCCTTCTCCCACCCCCTCCTCCCTCCTCTTCTCCCCTCTCATC
CCTCTAGATCAGCACGCTCCGACGCGATTTCACCGGATCCGAATCCCTTG
TTGCTTCTTCCCGCCAGGAAATCGCCCAGCTCCAGGTTTCTCTTTCCGCG
AGTCGTGCCAACCAGGAGGCCGCAGAGACCGCTACGAAAAAGGCCGATAC
AGAACGGAGACGCGCGGAGGAGGTTATAACGGCGCAGGAGCTGGCGATGG
AGGGGTTACTGAAGCGGGAGAAGGAGCATCAGGGGAGGAAGGAGGAAGCG
GAGGTGATGATGACGGAGGTTCGGAGGAAGGGGGAGGAGCTGGAGCGACA
GCTGGCGGCCGCCAAGAGGGAGGTGCGGGAGCTCAAGGAGAAGTTAAAGG
AGTATGTGCTCAGGGAGGAAGCGGCCAGGCGGGCCAAGGAAAAGACCGAG
GCCACAGTCACGGCCCTGGAAACGGAAATTCAAAAGTGGCGGGAACGGAC
GCGAAGCTTGAAGATTTCTTCGCAGGAGATGGAAAAATGGCGGGAAGAAA
GGGCGGACATGCTTTCGAAGATGAAGAACATGGAAGGGGAGAAGGAAACG
TTGGAAGGGCGGGTGGGGAGGGCGCGCCAGGAGTTACGCCTGATGGAGAG
GATGAGCGTGTGCGAGGCAGAGAAAGTGAAGGGCTTGGAGGAGGAGGTGG
AACGGCTCGGGTGGGAGCGGGAGCGAGTGGCCCTAGAGAGGAGGCAGGAG
GAAGAAGGCTGGGAGAAGGAGAAGGCGGCGATGGAAATGGAGTGGGAAGG
GAGGATGAGAGAGGTGGAGAGGGAGGTGAGGCGGAGGGAAGGGGAAGTGA
AGGCCCGGGAGGAGAGGGTGGAGTGGTACAAGAAGCGAGTGGTGGAGCTG
GAGGCGCGGTCGAAGGGTAGGGACCGAGGGAGGGAGGGAGAGAGGGAGCG
GAGGGCGGCTTTACAGGAGGAGGTTCGGGTGATGCGGAGGGAAGGAGGGG
AAGTAGCGCGGCTGAGGCATGAGGAGGTTCGGGTGAGGGAAGAGGAGCCA
AGGCAGGAGTCTCATCAGTCGCGGAGGCTGGTGGCGCAGGGTGTATTGAG
GGGAGGGAGGGTGTCCGATCCTGTCGGACGCAAAGCAGCGGGTGGGGAGG
AAGGGAGGGAACGAGAAAGGGCCATGTGGCATCATTCCTCAGCCTTCGAC
CCTGACGAGGAGGTGCGTCTTCAACGCCGGTTGCTTCGGGCGCACTGCCC
CGCCAGCCCCGCCCCTGCCTGGGCTTGCCCCGACGCGAGGCCGCGGGGTG
GAGGCTCGAGGAGGGAATGGCGCGGGGTGATACCGGGAGAGGAAGAGGGG
AAGGAGGGTGGGAAGGCGGGGTCAGAGGAGGTTCGGGAGGGAGGGAGGAG
TCTGTCTGCGGCGGCACGGGATGAGAAATACGAGAATCGACAGGTTTCTT
CCTATGGGAGCATGGGCATGAGGTTCGAGGACTTTGGAGTGGGAAGGAGG
AAGGCCGCCGGGATGGGAAGGGGGACGGAGACAGGCGGGGGCAGGAGGGC
ATTGAGCCCCTCCACGGCCATCGCCACGCCCCCCCTGTCCCGTTATGGCA
CTTACACGGCCCGATCTCCGCACGCCACACATACACATTCCCCGTTCCCG
TCCACGTACGCCTCCCCCTCCTTCCCTTCCCCTCGCATCACGCACATCCC
ACGCCAGGGCCCGTCTCCGGCACGCTTGA

Coding sequence (CDS) from alignment at KK037250.1:73791..76169-

>rna8751 ID=rna8751|Name=rna8751|organism=Nannochloropsis gaditana|type=CDS|length=2628bp|location=Sequence derived from alignment at KK037250.1:73791..76169- (Nannochloropsis gaditana)
GGCCCGTCTCCGGCACGCTTGAATCAGCACGCTCCGACGCGATTTCACCG
GATCCGAATCCCTTGTTGCTTCTTCCCGCCAGGAAATCGCCCAGCTCCAG
GTTTCTCTTTCCGCGAGTCGTGCCAACCAGGAGGCCGCAGAGACCGCTAC
GAAAAAGGCCGATACAGAACGGAGACGCGCGGAGGAGGTTATAACGGCGC
AGGAGCTGGCGATGGAGGGGTTACTGAAGCGGGAGAAGGAGCATCAGGGG
AGGAAGGAGGAAGCGGAGGTGATGATGACGGAGGTTCGGAGGAAGGGGGA
GGAGCTGGAGCGACAGCTGGCGGCCGCCAAGAGGGAGGTGCGGGAGCTCA
AGGAGAAGTTAAAGGAATGTCTCCATTAACACAAACACATCGAAGAGGCA
TCAGAGGAGGAGGCGACCGTGACCCGCTTTACACGCTGCGAGGCTTCTGC
TGCTTCGGTTTCCTGGCTTCAGTCCTCGAATTCTCTGGCCCCGCGTCCTG
TCAAAAGAGCTCATTTTCGAGCATGCAAGGCCCTGGAAGGAGAGAGCCGG
ACGGCCTGGCCCTACATCCGAGCACCGCCACCAACACAAACGGCCCAAAA
GAGTCCACCAACGACGAGCACTTCAACCTTCTCCTGCAGATACAACAACT
GCAGGACAAATGTGCTTACCTTGCTGGGGGCACTGATGGAGTGCAACTCG
CAGAGGTGTTAATGGAGAAGGAAGAAGAATGTCGCATGAAGGACCGGGAG
ATCGCGGTCCTACATGAAAAAGTGGAAGGAACGCTGGGGGTGGTGGCAGA
AATGGAGAAAGAGAAGGAGGTGTTGAAGGGCGTCATGCGTCAGCAAGAAA
GCAACATCCTGGACTTGACTCAACAGGGCCCGTCTCCGGCACGCTTGAAT
CAGCACGCTCCGACGCGATTTCACCGGATCCGAATCCCTTGTTGCTTCTT
CCCGCCAGGAAATCGCCCAGCTCCAGGTTTCTCTTTCCGCGAGTCGTGCC
AACCAGGAGGCCGCAGAGACCGCTACGAAAAAGGCCGATACAGAACGGAG
ACGCGCGGAGGAGGTTATAACGGCGCAGGAGCTGGCGATGGAGGGGTTAC
TGAAGCGGGAGAAGGAGCATCAGGGGAGGAAGGAGGAAGCGGAGGTGATG
ATGACGGAGGTTCGGAGGAAGGGGGAGGAGCTGGAGCGACAGCTGGCGGC
CGCCAAGAGGGAGGTGCGGGAGCTCAAGGAGAAGTTAAAGGAATGTCTCC
ATTAACACAAACACATCGAAGAGGCATCAGAGGAGGAGGCGACCGTGACC
CGCTTTACACGCTGCGAGGCTTCTGCTGCTTCGGTTTCCTGGCTTCAGTC
CTCGAATTCTCTGGCCCCGCGTCCTGTCAAAAGAGCTCATTTTCGAGCAT
GCAAGGCCCTGGAAGGAGAGAGCCGGACGGCCTGGCCCTACATCCGAGCA
CCGCCACCAACACAAACGGCCCAAAAGAGTCCACCAACGACGAGCACTTC
AACCTTCTCCTGCAGATACAACAACTGCAGGACAAATGTGCTTACCTTGC
TGGGGGCACTGATGGAGTGCAACTCGCAGAGGTGTTAATGGAGAAGGAAG
AAGAATGTCGCATGAAGGACCGGGAGATCGCGGTCCTACATGAAAAAGTG
GAAGGAACGCTGGGGGTGGTGGCAGAAATGGAGAAAGAGAAGGAGGTGTT
GAAGGGCGTCATGCGTCAGCAAGAAAGCAACATCCTGGACTTGACTCAAC
AGGGCCCGTCTCCGGCACGCTTGAATCAGCACGCTCCGACGCGATTTCAC
CGGATCCGAATCCCTTGTTGCTTCTTCCCGCCAGGAAATCGCCCAGCTCC
AGGTTTCTCTTTCCGCGAGTCGTGCCAACCAGGAGGCCGCAGAGACCGCT
ACGAAAAAGGCCGATACAGAACGGAGACGCGCGGAGGAGGTTATAACGGC
GCAGGAGCTGGCGATGGAGGGGTTACTGAAGCGGGAGAAGGAGCATCAGG
GGAGGAAGGAGGAAGCGGAGGTGATGATGACGGAGGTTCGGAGGAAGGGG
GAGGAGCTGGAGCGACAGCTGGCGGCCGCCAAGAGGGAGGTGCGGGAGCT
CAAGGAGAAGTTAAAGGAATGTCTCCATTAACACAAACACATCGAAGAGG
CATCAGAGGAGGAGGCGACCGTGACCCGCTTTACACGCTGCGAGGCTTCT
GCTGCTTCGGTTTCCTGGCTTCAGTCCTCGAATTCTCTGGCCCCGCGTCC
TGTCAAAAGAGCTCATTTTCGAGCATGCAAGGCCCTGGAAGGAGAGAGCC
GGACGGCCTGGCCCTACATCCGAGCACCGCCACCAACACAAACGGCCCAA
AAGAGTCCACCAACGACGAGCACTTCAACCTTCTCCTGCAGATACAACAA
CTGCAGGACAAATGTGCTTACCTTGCTGGGGGCACTGATGGAGTGCAACT
CGCAGAGGTGTTAATGGAGAAGGAAGAAGAATGTCGCATGAAGGACCGGG
AGATCGCGGTCCTACATGAAAAAGTGGAAGGAACGCTGGGGGTGGTGGCA
GAAATGGAGAAAGAGAAGGAGGTGTTGAAGGGCGTCATGCGTCAGCAAGA
AAGCAACATCCTGGACTTGACTCAACAG

Synonyms

Publications