rna8747, rna8747 (mRNA) Nannochloropsis gaditana

Overview
Namerna8747
Unique Namerna8747
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length321
Alignment locationKK037250.1:66377..68094 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101377g1.3826.mrna
Orig protein idgnl|cribi|Naga_101377g1.3826
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:66377..68094 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101377g1gene8479Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8747rna8747-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21956.1cds8717Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8747 ID=rna8747|Name=rna8747|organism=Nannochloropsis gaditana|type=mRNA|length=321bp
ATGACCGCGGCCCCTGACACGGTGCCTAAATGGGCTGGGGGTGACTTTAT
ACGAGCTCTTCAACAAGGCTACGGAATTGTGGATGCTAAGTGTGGACGGT
TGCATCTGTTCGCGGGCGCTGCTCCGTGTCACTGCAGTATCCGGCAAGCA
CCCTGCATTGGCCATCCCACCCTCCTCCTCCTCCGCCTGCTCTCGGCCCT
GCACGAGTCACTATCTCTAGCACGCCCGAAAGCAAAGGGCTGTGGCGAGG
CCCTGTTTATACACGAGTACATACGGAAATTGCATAGCTTCATAGCCCGG
ACAAGCTTTATCTTGCCATGA
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protein sequence of rna8747

>rna8747-protein ID=rna8747-protein|Name=rna8747|organism=Nannochloropsis gaditana|type=polypeptide|length=266bp
MTPVLLDPLIAPPFCLPTSLPLSPPSSSFPPGPSQSMGATASAPTASGGD
TPVHHTGHLFQGFGHRAIPVNTGPFTDAEYAHLKQVFARYARGGGEVKKK
QAGRMGMEGFVALFDVRSEKKFAPALYAVFKDMAVTAAALASALGEEGVG
GSVAEEKEEDGLGFEDFFRGVCACSRASDRSVLQVVYRVMCRLEPPGAAG
GKEEALCPYTGLKEVIRLAYQCHQLATQPLSSSSSSMSSATTSAASSSSS
LASAPPSPPSPPPPWT
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mRNA from alignment at KK037250.1:66377..68094+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8747 ID=rna8747|Name=rna8747|organism=Nannochloropsis gaditana|type=mRNA|length=1718bp|location=Sequence derived from alignment at KK037250.1:66377..68094+ (Nannochloropsis gaditana)
CTTTCCAGTTTATAAAAGGCACCCGGGCCGGCACCGATCCTTTTTCTGAA
CGAGAAACAGTGTTTCAAATGCGTGGTGGATGCGGGTTGGGTTTTGGGTT
TGAGAGGATCCGTTGCATGGCCTTATGTGCcattttttttatttttcccc
tgtaaccctccttcctgcttgaGCTGTCTCGAGCGATTTGATTAAACCAC
CTCGCAGGATAATCGTACGCACACCTATGGCTTGCGCGTAGCAGTGTCTG
CATGCCCGTGGCTGCTCATGGACACTCAGACCTGAGGGTTCTGTCCGTCT
TTGTGGCGTATGTAGGCCTCATGTATTTGTACCCATGGTGTGACGGTTAT
CTGCTCGTTGTGTAGGAATGCCGCCAAGGGTGCGCGGGCCCAAAAATCCA
TCCGTAGGGACACGCGCACTCCTCTTTCGCTGCGTCAGCGCGTTCGAATG
ACTCCGGTCCTCCTCGACCCGCTTATAGCCCCCCCTTTCTGCCTCCCcac
atcccttcccctctcccctccttcctcctcctttcctcccggcccatccc
AGTCCATGGGCGCCACTGCCAGCGCACCTACAGCCAGCGGAGGGGACACT
CCCGTGCATCACACGGGTCACTTGTTCCAGGGATTCGGGCACCGGGCGAT
TCCCGTGAATACGGGGCCGTTCACAGACGCGGAGTACGCGCATTTGAAGC
AAGTCTTCGCCCGGTATGCccggggcggtggagaagtgaagaagaagcag
gcaggaaggatggggatggaaggatTTGTGGCCCTCTTTGACGTGAGGAG
CGAGAAAAAATTCGCGCCCGCGTTGTACGCCGTGTTCAAGGACATGGCGG
TGACGGCCGCCGCCCTGGCATCCGcgttgggggaggaaggggtaggaggg
agcgtagcggaggagaaggaagaggacgggctGGGCTTCGAGGATTTCTT
CCGGGGCGTGTGCGCGTGTTCCCGGGCCTCGGACCGGTCTGTCCTGCAGG
TGGTTTATCGGGTCATGTGTCGCCTGGAACCCCCGGGGGCGgccggcggg
aaggaggaggctctctGTCCCTACACTGGCCTCAAAGAGGTGATCCGTCT
CGCTTACCAATGCCACCAACTCGCCACCcagcctctctcctcttcctcgt
cctccatgtcttcggccaccacctccgccgcctcctcctcctcctccttg
gcctccgcccctccctcccctccctccccaccccccccgtGGACCTGAGC
TTCgacacctccctcttcagcCACCCCTACATCCGGGACCACGACattcc
gcccgccctcccgtccttcctcccgccctccctcccttcctcgaacCCTT
CATCCACCAGCCTCTCCTCGGAATTCGCCctgtcggaggaagaggagccc
ccgctccccttcGACGAGTTCTATGCCTGGGCCACTGattgctttcccct
cctctatcagcccttcgccgccttcttctacgcctccctcttcctccggg
gcccttcccccaccgccttcgcccttcccccctccctccgcctcgccctc
ccccgcctcctcgctccttcctccctcctcacggCCCCACAATCCGTCTT
CGGCCtggcccttgcctccccttccttgcaaGGGGCATGGACGCGGCTCT
ACACGAGCGACGAGAACGGCCTATCCTTCAACCGCATCTGTCACCACATC
CTCGGGTACCGCGGTacg
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Coding sequence (CDS) from alignment at KK037250.1:66377..68094+

>rna8747 ID=rna8747|Name=rna8747|organism=Nannochloropsis gaditana|type=CDS|length=801bp|location=Sequence derived from alignment at KK037250.1:66377..68094+ (Nannochloropsis gaditana)
ATGACTCCGGTCCTCCTCGACCCGCTTATAGCCCCCCCTTTCTGCCTCCC
cacatcccttcccctctcccctccttcctcctcctttcctcccggcccat
cccAGTCCATGGGCGCCACTGCCAGCGCACCTACAGCCAGCGGAGGGGAC
ACTCCCGTGCATCACACGGGTCACTTGTTCCAGGGATTCGGGCACCGGGC
GATTCCCGTGAATACGGGGCCGTTCACAGACGCGGAGTACGCGCATTTGA
AGCAAGTCTTCGCCCGGTATGCccggggcggtggagaagtgaagaagaag
caggcaggaaggatggggatggaaggatTTGTGGCCCTCTTTGACGTGAG
GAGCGAGAAAAAATTCGCGCCCGCGTTGTACGCCGTGTTCAAGGACATGG
CGGTGACGGCCGCCGCCCTGGCATCCGcgttgggggaggaaggggtagga
gggagcgtagcggaggagaaggaagaggacgggctGGGCTTCGAGGATTT
CTTCCGGGGCGTGTGCGCGTGTTCCCGGGCCTCGGACCGGTCTGTCCTGC
AGGTGGTTTATCGGGTCATGTGTCGCCTGGAACCCCCGGGGGCGgccggc
gggaaggaggaggctctctGTCCCTACACTGGCCTCAAAGAGGTGATCCG
TCTCGCTTACCAATGCCACCAACTCGCCACCcagcctctctcctcttcct
cgtcctccatgtcttcggccaccacctccgccgcctcctcctcctcctcc
ttggcctccgcccctccctcccctccctccccaccccccccgtGGACCTG
A
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Synonyms
Publications