rna8746, rna8746 (mRNA) Nannochloropsis gaditana

Overview
Namerna8746
Unique Namerna8746
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1602
Alignment locationKK037250.1:62820..64037 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100845g2.3237.mrna
Orig protein idgnl|cribi|Naga_100845g2.3237
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:62820..64037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100845g2gene8478Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8746rna8746-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21957.1cds8716Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8746 ID=rna8746|Name=rna8746|organism=Nannochloropsis gaditana|type=mRNA|length=1602bp
CTGGTCAATCGTGAACATTGCAAGTGAGACTCTGAAGCTTCGGACGTCGT
GTTCCCTGTTTTGTAAAAACTCTTGGAAAGTGAACCGGTCGACACCTGTG
GCGGGTGTTTATTCTCTCTCCCGAAAGCAGGTTCCCCCGGCCTCAGCAGG
ACTTTCCGTGTATTCCACACGTACATGCATCTCTCTTAAGAGTAAATATA
CATTTATTCGCTAGTCTGGACAAATTTGGAGTGCATTCTCCGCGACCCGA
GAATGGATGCTCATACTCCTGTACCGTCAAAGGAGCGTCACTCCCATGGA
GATACTCCCGAGCCTCGATCCTCCTCTCTTTGGTGCGAAAGCAGAAAGTT
TAAGCATGTACTTTCCCAAATACGGTCTGCAAATCGATCTATAGCCATTA
TACACTCGCCGCCGTTCGGGTCGTCCCTTACTTCTATCTTTTACAGTCCG
CATCGTTTCATGATCCGGTTGCCAGGACCCCAAGCACCATGTTCATTTTT
TTCTTAACCATTCAGAATCACAGTACGACCACGCGCCCGACAAGAATGGA
TCGACAAGCAAGTTTGAGATCGCGCTTGATCCAGGAGTCCTCCGGTGGCT
GTCCAAAGCAGACGGCTTTCATGAAGGAAGACGAAGACACGGCCACCACG
ACCCCCCCCCGGCAAGTTTCCAAGATTGCCATGGGCACGCTCCAACGCAT
GAAGTCCTTCTCCTCTGCCATCCGCCCCGCTTTCCTCCGCGCTATTGGCT
CGGACAAAGACGCGACCGTCTTGTACGCCGGGTATTTGATGAAGTTGAAA
AAGCCCTCGAATGTGCCCGGCAGGCCCGCGTCGACCTCCCTCGCAGCGGC
TCCTCGTCCACAGTCGCCCGCCCCCGGTGCTGTTGGTGGCAACCAAACGC
AGAAGATGGAGGACAACGCGGAGAGGAACCCCTTGCTTGCACGCATGTCA
ATCAGCAGGAAACTGCCTTCTCCTGCTTCTCCGCTCCGTCCCCCTTCCCA
ACCGCACCCACCCCGCTCCCCTCCCCCACCCCCACAACAACCACACTTAA
TTCGTCGATTCGTCGTGCTCACCCCTACATCCTTGCGCTGGTACAAGCGG
GAAGAGAACGACGAGGACGTGGGCGAGCTCCTAGGTCGAGTCCTGTTGAA
GGATATAAAAGACCTCGTCCTCCCTCCCTCCCCATCGTCCTCCCTCCCCC
CCACCCTCGACGGCTTTCCCTTCGAAGTCGTCTGTGGGTCCCGCCGCCGC
ACGTTTGTGGCCGTTGGGGAGGACGAAAGGGAGGCGTGGATGCTGGCCTT
GGAGGCAGCTCGAACGAAAGTCAAAGAGGAGAGGCTCCTGCCTGACAGCA
GCCGGAGGCCCGCATCGGCCGCGGGGGGGGGGGGCGGGCACCCCCTCCCT
CGATCGAGATGGTGTTGGTAAAGGACAAGGCTCTGGTGGAGACGGTGCGG
GCGCATGACGTGGCCTATGGGAGCCCTGTGGTGATCCGCGCGATGAAGAG
GGAAGACATGGTGCTGGTGAAGTTGGGAGGAAGCTCCGGGTGCCTTGTCA
TGGAAGGCGCGGTGCTCGCGGAGAAATTGAAGGAGTACGCGGAGGCGGTG
AA
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protein sequence of rna8746

>rna8746-protein ID=rna8746-protein|Name=rna8746|organism=Nannochloropsis gaditana|type=polypeptide|length=106bp
MTAAPDTVPKWAGGDFIRALQQGYGIVDAKCGRLHLFAGAAPCHCSIRQA
PCIGHPTLLLLRLLSALHESLSLARPKAKGCGEALFIHEYIRKLHSFIAR
TSFILP
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mRNA from alignment at KK037250.1:62820..64037+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8746 ID=rna8746|Name=rna8746|organism=Nannochloropsis gaditana|type=mRNA|length=1218bp|location=Sequence derived from alignment at KK037250.1:62820..64037+ (Nannochloropsis gaditana)
ATGACCGCGGCCCCTGACACGGTGCCTAAATGGGCTGGGGGTGACTTTAT
ACGAGCTCTTCAACAAGGCTACGGAATTGTGGATGCTAGTGATAGCGAca
aatgaaggggagggatgaaaagaTGCATGCtatggtgggaaaggaggagg
atacaAATTATAAAGTACGATAACAGACGAAAAGAAATCCAGTaactctt
tttttttccgtATTATAGAAACGATGGCATTTCATATTCACAAGCAAGAC
CTTGCAAGAACCCGAAAATCCTATTTTACTCGTTCATGCCGACGATGGCA
ATTTGGGAATTTTACGTGCCTAGGGGCAGGTAGGTACTCACgggatcctc
ctcccaaaaCGACAAGAATGGTACCCCCACAGCCTTATACATCCCACACC
AAGCAGAATTCTGATAATGCGATAATTGTCTTTTGATCTAGGGCATTTGA
CTCCCGAAAAACAAGCACTCAGCGACTGTAGTGACAATTATAAGCTACat
accccccctcctttcccgagTCTGAGCGCGGGGTAGCCAAAAGTAGCGTT
GACTGGCGAGATTGCTTCGCTCAACCGTGTCACCGTTGATAAGACACAAC
AGTTCGTAAGACAAAAGTACCCAGCAAAAAgttgagaaaggagaaaaaaa
agaaaaattgtTGCGCCCGGCGGCGTGCAGGTCGAAAGCAGCAACCAGTa
gcggccacgccctccctccctccctccctcccttcctcgcttcctccctc
gcttcctccctttggcAAAGAGAGTCCACCACCTCGGAGAACAAAGAAAC
TGATGTAATACTCTTGTCATACGCGCGGTTTTCGAGGGAGGATCGGGTTT
CAATCGTGAGGGATAGGGACGGAATTGTCATAATCATAACCCTACCTTCT
TTCGGCTTACCTTAGTCTGGTCACCCCTTCCTGACATTCATGCCCTAACC
CCTCTCCTGATCATTCCGTTCTTCTATCCCCACAGAGTGTGGACGGTTGC
ATCTGTTCGCGGGCGCTGCTCCGTGTCACTGCAGTATCCGGCAAGCACCC
TGCATTggccatcccaccctcctcctcctccgcctgctctcGGCCCTGCA
CGAGTCACTATCTCTAGCACGCCCGAAAGCAAAGGGCTGTGGCGAGGCCC
TGTTTATACACGAGTACATACGGAAATTGCATAGCTTCATAGCCCGGACA
AGCTTTATCTTGCCATGA
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Coding sequence (CDS) from alignment at KK037250.1:62820..64037+

>rna8746 ID=rna8746|Name=rna8746|organism=Nannochloropsis gaditana|type=CDS|length=642bp|location=Sequence derived from alignment at KK037250.1:62820..64037+ (Nannochloropsis gaditana)
ATGACCGCGGCCCCTGACACGGTGCCTAAATGGGCTGGGGGTGACTTTAT
ACGAGCTCTTCAACAAGGCTACGGAATTGTGGATGCTAAGTGTGGACGGT
TGCATCTGTTCGCGGGCGCTGCTCCGTGTCACTGCAGTATCCGGCAAGCA
CCCTGCATTggccatcccaccctcctcctcctccgcctgctctcGGCCCT
GCACGAGTCACTATCTCTAGCACGCCCGAAAGCAAAGGGCTGTGGCGAGG
CCCTGTTTATACACGAGTACATACGGAAATTGCATAGCTTCATAGCCCGG
ACAAGCTTTATCTTGCCATGAATGACCGCGGCCCCTGACACGGTGCCTAA
ATGGGCTGGGGGTGACTTTATACGAGCTCTTCAACAAGGCTACGGAATTG
TGGATGCTAAGTGTGGACGGTTGCATCTGTTCGCGGGCGCTGCTCCGTGT
CACTGCAGTATCCGGCAAGCACCCTGCATTggccatcccaccctcctcct
cctccgcctgctctcGGCCCTGCACGAGTCACTATCTCTAGCACGCCCGA
AAGCAAAGGGCTGTGGCGAGGCCCTGTTTATACACGAGTACATACGGAAA
TTGCATAGCTTCATAGCCCGGACAAGCTTTATCTTGCCATGA
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Synonyms
Publications