rna8745, rna8745 (mRNA) Nannochloropsis gaditana

Overview
Namerna8745
Unique Namerna8745
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length927
Alignment locationKK037250.1:59886..61487 -

Link to JBrowse

Properties
Property NameValue
ProductPleckstrin like protein
Orig transcript idgnl|cribi|Naga_100845g1.3238.mrna
Orig protein idgnl|cribi|Naga_100845g1.3238
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:59886..61487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100845g1gene8477Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21958.1cds8715Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8745rna8745-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8745 ID=rna8745|Name=rna8745|organism=Nannochloropsis gaditana|type=mRNA|length=927bp
CCACGAAGCCCCACGCGTTAAGAGTACGCCATGCCTACGTTCCTGCCACC
TTTTTTATCGTCCGTTGACGGGTGTGTCCTTTGTTCTGGGACCCTTTTGT
CTTGACCGGTACGGCCCTAACTTGCAGTCGAGCGAGGAGACCGCTGAGAC
TGAGAGAAGCCCTGGGGCTTAACTGTGATTTTATTGATGCTAGTCGACAT
TATGTGCATGGATTTTCACCCCACCTCCTGTACCGTCAAGAGAACCTTTT
CCATTCTTTCGCGGGACGGGTTTTGGCCCGTGTGCTCGTCACAGCGCCAT
GTCGACGTTGCGGCCGATGCCTACCCCCCTCCACGCCTAGGAGACAGTGT
TTAGGACTGATTACCTGGACCAAACGGTGGTCATTGCGACGCATTATGCT
GAGAAAAAACGCACAGCTTCTCACACGCAGCCGCCAGGATGATTGACTTC
AGCGTTATACGCGCACGGGGTTGGTCTTCGGAGGGTGCTGTCCATTGGCT
CCCGCCCCCCTCTAATTCCATCTCCTCTTCACATGTACAGTACACCCTCC
TTCTTTCCGTTGTAACATGGCCGCTGCTGCTCCTTCCTCCCCTTCACCTT
CCAGCATGGAGAAGCCGAAGCCTAACGTGGGAGAGATTTTGAAAAAATCG
GCCATGCGCGCTCTTGGGGGTGGCATTTCAGGGGCTGCCGCCATGGGCAT
CAACGTGGGCGCACTCATGTGGCTGAGAACAACCGTCAACTACCAATATC
GCAACGGCACGACCATGCGCGTGGCGCTCAAGACGTTGTACGCGGACGGC
GGCATTCCCCGCTTCTACCAGGGACTGCTCCCTGCCCTGGTCCAGGGCCC
GGCCTCCCGATTCGGCGACACGGCGGCCAATGCCGGCGTCATTACCCTGC
TGGATTCCTTCGACGAGACGAAGGTGC
back to top

protein sequence of rna8745

>rna8745-protein ID=rna8745-protein|Name=rna8745|organism=Nannochloropsis gaditana|type=polypeptide|length=310bp
MFIFFLTIQNHSTTTRPTRMDRQASLRSRLIQESSGGCPKQTAFMKEDED
TATTTPPRQVSKIAMGTLQRMKSFSSAIRPAFLRAIGSDKDATVLYAGYL
MKLKKPSNVPGRPASTSLAAAPRPQSPAPGAVGGNQTQKMEDNAERNPLL
ARMSISRKLPSPASPLRPPSQPHPPRSPPPPPQQPHLIRRFVVLTPTSLR
WYKREENDEDVGELLGRVLLKDIKDLVLPPSPSSSLPPTLDGFPFEVVCG
SRRRTFVAVGEDEREAWMLALEAARTKVKEERLLPDSSRRPASAAGGGGG
HPLPRSRWCW
back to top

mRNA from alignment at KK037250.1:59886..61487-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8745 ID=rna8745|Name=rna8745|organism=Nannochloropsis gaditana|type=mRNA|length=1602bp|location=Sequence derived from alignment at KK037250.1:59886..61487- (Nannochloropsis gaditana)
CTGGTCAATCGTGAACATTGCAAGTGAGACTCTGAAGCTTCGGACGTCGT
GTTCCCTGTTTTGTAAAAACTCTTGGAAAGTGAACCGGTCGACACCTGTG
GCGGGTGTTTATTCTCTCTCCCGAAAGCAGGTTCCCCCGGCCTCAGCAGG
ACTTTCCGTGTATTCCACACGTACATGCATCTCTCTTAAGAGTAAATATA
CATTTATTCGCTAGTCTGGACAAATTTGGAGTGCATTCTCCGCGACCCGA
GAATGGATGCTCATACTCCTGTACCGTCAAAGGAGCGTCACTCCCATGGA
GATACTCCCGAGCCTCGATCCTCCTCTCTTTGGTGCGAAAGCAGAAAGTT
TAAGCATGTACTTTCCCAAATACGGTCTGCAAATCGATCTATAGCCATTA
TACACTCGCCGCCGTTCGGGTCGTCCCTTACTTCTATCTTTTACAGTCCG
CATCGTTTCATGATCCGGTTGCCAGGACCCCAAGCACCATGTTCATTTTT
TTCTTAACCATTCAGAATCACAGTACGACCACGCGCCCGACAAGAATGGA
TCGACAAGCAAGTTTGAGATCGCGCTTGATCCAGGAGTCCTCCGGTGGCT
GTCCAAAGCAGACGGCTTTCATGAAGGAAGACGAAGACACGGCCACCACG
ACCCCCCCCCGGCAAGTTTCCAAGATTGCCATGGGCACGCTCCAACGCAT
GAAGTCCTTCTCCTCTGCCATCCGCCCCGCTTTCCTCCGCGCTATTGGCT
CGGACAAAGACGCGACCGTCTTGTACGCCGGGTATTTGATGAAGTTGAAA
AAGCCCTCGAATGTGCCCGGCAGGCCCGCGTCGACCTCCCTCGCAGCGGC
TCCTCGTCCACAGTCGCCCGCCCCCGGTGCTGTTGGTGGCAACCAAACGC
AGAAGATGGAGGACAACGCGGAGAGGAACCCCTTGCTTGCACGCATGTCA
ATCAGCAGGAAACTGCCTTCTCCTGCTTCTCCGCTCCGTCCCCCTTCCCA
ACCGCACCCACCCCGCTCCCCTCCCCCACCCCCACAACAACCACACTTAA
TTCGTCGATTCGTCGTGCTCACCCCTACATCCTTGCGCTGGTACAAGCGG
GAAGAGAACGACGAGGACGTGGGCGAGCTCCTAGGTCGAGTCCTGTTGAA
GGATATAAAAGACCTCGTCCTCCCTCCCTCCCCATCGTCCTCCCTCCCCC
CCACCCTCGACGGCTTTCCCTTCGAAGTCGTCTGTGGGTCCCGCCGCCGC
ACGTTTGTGGCCGTTGGGGAGGACGAAAGGGAGGCGTGGATGCTGGCCTT
GGAGGCAGCTCGAACGAAAGTCAAAGAGGAGAGGCTCCTGCCTGACAGCA
GCCGGAGGCCCGCATCGGCCGCGGGGGGGGGGGGCGGGCACCCCCTCCCT
CGATCGAGATGGTGTTGGTAAAGGACAAGGCTCTGGTGGAGACGGTGCGG
GCGCATGACGTGGCCTATGGGAGCCCTGTGGTGATCCGCGCGATGAAGAG
GGAAGACATGGTGCTGGTGAAGTTGGGAGGAAGCTCCGGGTGCCTTGTCA
TGGAAGGCGCGGTGCTCGCGGAGAAATTGAAGGAGTACGCGGAGGCGGTG
AA
back to top

Coding sequence (CDS) from alignment at KK037250.1:59886..61487-

>rna8745 ID=rna8745|Name=rna8745|organism=Nannochloropsis gaditana|type=CDS|length=933bp|location=Sequence derived from alignment at KK037250.1:59886..61487- (Nannochloropsis gaditana)
ATGTTCATTTTTTTCTTAACCATTCAGAATCACAGTACGACCACGCGCCC
GACAAGAATGGATCGACAAGCAAGTTTGAGATCGCGCTTGATCCAGGAGT
CCTCCGGTGGCTGTCCAAAGCAGACGGCTTTCATGAAGGAAGACGAAGAC
ACGGCCACCACGACCCCCCCCCGGCAAGTTTCCAAGATTGCCATGGGCAC
GCTCCAACGCATGAAGTCCTTCTCCTCTGCCATCCGCCCCGCTTTCCTCC
GCGCTATTGGCTCGGACAAAGACGCGACCGTCTTGTACGCCGGGTATTTG
ATGAAGTTGAAAAAGCCCTCGAATGTGCCCGGCAGGCCCGCGTCGACCTC
CCTCGCAGCGGCTCCTCGTCCACAGTCGCCCGCCCCCGGTGCTGTTGGTG
GCAACCAAACGCAGAAGATGGAGGACAACGCGGAGAGGAACCCCTTGCTT
GCACGCATGTCAATCAGCAGGAAACTGCCTTCTCCTGCTTCTCCGCTCCG
TCCCCCTTCCCAACCGCACCCACCCCGCTCCCCTCCCCCACCCCCACAAC
AACCACACTTAATTCGTCGATTCGTCGTGCTCACCCCTACATCCTTGCGC
TGGTACAAGCGGGAAGAGAACGACGAGGACGTGGGCGAGCTCCTAGGTCG
AGTCCTGTTGAAGGATATAAAAGACCTCGTCCTCCCTCCCTCCCCATCGT
CCTCCCTCCCCCCCACCCTCGACGGCTTTCCCTTCGAAGTCGTCTGTGGG
TCCCGCCGCCGCACGTTTGTGGCCGTTGGGGAGGACGAAAGGGAGGCGTG
GATGCTGGCCTTGGAGGCAGCTCGAACGAAAGTCAAAGAGGAGAGGCTCC
TGCCTGACAGCAGCCGGAGGCCCGCATCGGCCGCGGGGGGGGGGGGCGGG
CACCCCCTCCCTCGATCGAGATGGTGTTGGTAA
back to top
Synonyms
Publications