rna8739, rna8739 (mRNA) Nannochloropsis gaditana

Overview
Namerna8739
Unique Namerna8739
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length696
Alignment locationKK037250.1:49246..49654 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102642g1.90.mrna
Orig protein idgnl|cribi|Naga_102642g1.90
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:49246..49654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102642g1gene8471Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8739rna8739-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21963.1cds8710Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8739 ID=rna8739|Name=rna8739|organism=Nannochloropsis gaditana|type=mRNA|length=696bp
ATGGACACATCGGTACCCCTGAATGAATGGGCCGGCCTCGAGCACCACAT
CCTCTTTCCCCTCCGCGCCGTCCGAGCCCAAGCGCGACTTCGGCGGCTCC
CCTTGGTGGGAAGGGCGGTGCAATACCTCCTGGGGAAAAAACTGGCGTTC
TTCTTTGAATTGGCCGTCGTCTTCATCCAATCGCACTCGAACGCGCACAA
AAAACTGAACGAACTCTTCGGTAAAAACGGGCCCGTGACCCGGCAGCTCG
AGAAGGAAGTGGAGGAGGAAGTGGGCAAGGCCAAGGCCGCCCTGGAAGAG
TTCGTGCCCGTCTTCCCCGACATCATCAACAGCGTCAAGACGGAAATGGC
GGCCCGATACATGCTCAACAAGTGTCGCTCCATGCTGGAGGCGGCCATGG
AGAGCGGCTCCTTGGAAAAACGGGAGTTTGAAGACGCGATCCGGGAGGTC
AGTGCGTGGACGACTCCATGGTTAAACTCCACGACCACACCCACGCCGAG
GCCCCCTCCCCCCGATCCTCCCTCCTGGCCAGCCTCTCCTTCCTCCGCTT
CCTCCCTCCCTCCCAGCGCGACCTCCTCTTCTCCTCTGCCTCCCCCTTCT
GCCGTGACGTGTACATCCGGAGCGACACCTGCTTCCTCCCCAAAACGTCC
TCCCTCCCTTCCTCCCCCCCTCCTTCCCTCCCGGGCTGGTACGTGA
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protein sequence of rna8739

>rna8739-protein ID=rna8739-protein|Name=rna8739|organism=Nannochloropsis gaditana|type=polypeptide|length=118bp
MAPRGGRAGGREDGLSDRERRREGGRAGGREGGQLGGHRGRAGYGLVPPS
CPSEHVPRPTATERLRGGREQSFAVAAGQDGGREGGRGGGRGGGREGGGA
PSAWLAPAVVGAEHRKAG
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mRNA from alignment at KK037250.1:49246..49654+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8739 ID=rna8739|Name=rna8739|organism=Nannochloropsis gaditana|type=mRNA|length=409bp|location=Sequence derived from alignment at KK037250.1:49246..49654+ (Nannochloropsis gaditana)
ATGGccccgaggggggggagggcgggagggaggggttggggcggagaggg
agcttGCCCCCCTTGTCCCTGCCCCACGTGCGGCAGAGGACGGTCTCTCG
GACCGAGAGcgaaggcgagaaggagggcgggcgggaggaagggagggagg
gcagctcGGAGGTCAccgtgggagggcggggtacGGGCTTGTACCCCCCT
CTTGTCCATCGGAACACGTCCCAAGGCCGACGGCCACCGAGCGTCTACGA
GGCGGACGGGAACAGTCAtttgctgttgctgcagggcaggatggaggtcg
ggaaggagggcgggggggagggcggggaggagggcgggaaggaggagggg
caccgTCGGCATGGCTTGCCCCAGCtgtggtgggggcggagcaCCGGAAG
gcaggatga
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Coding sequence (CDS) from alignment at KK037250.1:49246..49654+

>rna8739 ID=rna8739|Name=rna8739|organism=Nannochloropsis gaditana|type=CDS|length=714bp|location=Sequence derived from alignment at KK037250.1:49246..49654+ (Nannochloropsis gaditana)
ATGGccccgaggggggggagggcgggagggagggAGGACGGTCTCTCGGA
CCGAGAGcgaaggcgagaaggagggcgggcgggaggaagggagggagggc
agctcGGAGGTCAccgtgggagggcggggtacGGGCTTGTACCCCCCTCT
TGTCCATCGGAACACGTCCCAAGGCCGACGGCCACCGAGCGTCTACGAGG
CGGACGGGAACAGTCAtttgctgttgctgcagggcaggatggaggtcggg
aaggagggcgggggggagggcggggaggagggcgggaaggaggaggggca
ccgTCGGCATGGCTTGCCCCAGCtgtggtgggggcggagcaCCGGAAGgc
aggatgaATGGccccgaggggggggagggcgggagggagggAGGACGGTC
TCTCGGACCGAGAGcgaaggcgagaaggagggcgggcgggaggaagggag
ggagggcagctcGGAGGTCAccgtgggagggcggggtacGGGCTTGTACC
CCCCTCTTGTCCATCGGAACACGTCCCAAGGCCGACGGCCACCGAGCGTC
TACGAGGCGGACGGGAACAGTCAtttgctgttgctgcagggcaggatgga
ggtcgggaaggagggcgggggggagggcggggaggagggcgggaaggagg
aggggcaccgTCGGCATGGCTTGCCCCAGCtgtggtgggggcggagcaCC
GGAAGgcaggatga
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Synonyms
Publications