rna8735, rna8735 (mRNA) Nannochloropsis gaditana

Overview
Namerna8735
Unique Namerna8735
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1460
Alignment locationKK037250.1:38391..42275 +

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Properties
Property NameValue
Productsalt overly sensitive 1
Orig transcript idgnl|cribi|Naga_100326g1.7808.mrna
Orig protein idgnl|cribi|Naga_100326g1.7808
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:38391..42275 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100326g1gene8467Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8735rna8735-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21970.1cds8706Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8735 ID=rna8735|Name=rna8735|organism=Nannochloropsis gaditana|type=mRNA|length=1460bp
CACAGGAGAAGAGAGGAAAAGTCTGTGCGATGGGATTACGCGTTGGTGAC
GTCTTTGTGTCGGTCTCAACCGTCCTCCTTTTTGGCCTTGCTCAAGGTTT
TTTGACTCCAGCCTCGGTCTCTCCTCAAGGATCGCTGTGGACGGGTGCTT
CCATTCGAGCGAAGGGCTGCACAAGGATCCAAATGATGGCGGGTAAAGAT
GCGACACTCTACGATTTTCCGGTTTCCAACAATGGAGGACGATGCCGCGT
GGTCATCTACGACAAGGGCCTTCAGGACAAGATTGAAATCAAGAAACCGG
ACGGCCCCCTTACCTCCATCAACCCCCAAGGCAAAGTCCCCGTGCTCATC
GACCACACGCTCGCCGATTTTCAAATCTTTGAATCCGACACCATCCTCCG
CCATCTCGTCCACAAATACGCCGAGACCGGCCCATCCTACCTCCCTTTCA
CCCTAGCTGCGCGGACCAAGAGCGACCTCATCTGCCGCTTCCATGACATG
TACATTACCACCGTCCAAGGATGTATGTATAAGGCCGCGCCCCCCTTCGG
AACCTTCGACAACCGGGAGGACGCCCTCAAGGATTTAAAAAAACAAATGG
CCCTCCTCGAGGAGTTAACGGACAGTAACGGCCCTTACCTGTGCGGGGCC
GAGAAGTCCATGGCGGACGCCACCCTCTTCGCCACTGGTGTTTTCTTGGA
ACAGATACTGCCGAATCATTTTGGCTGGACGTATCAGGAGGTGTTTGGGC
CCAAGCTCACCAAGTGGTGGGATTACCTCCTAGCGAACGAAGCGGCTTTT
CAAAAGGTCCATTCGGAAATCATCCTCGGCATCCAAGGCTGGGAAGAGAA
ACGGCGATGGAGCAACATCCTGGGCGCAGACCTTCAAGACCTGGCGCCCG
CCACCGTCTTCGACCAGATCCTTGCCAAGGCCCTGCCGTCTCAGGTTGTG
TTCGAGAACGACAAAGTGTTGGCTTTCCGAGACATCGCCCCTCAGGCCCC
GGTCCACATTCTCGTGATTCCCAAGCGGCGTGCGGGGCTGACGGCCCTGC
GGAAAGCAAGCCGGGAGCAGAAGGGGGTGCTGGGGGAGATGTTGGTGGCG
GTGGCGGAGATTGTGCGGCAGGAAAACATCGAGGGGGGTTATCGGGTGAT
AGTGAATGACGGCGAGGAGGCCGGCCAATCGGTGCACCATCTTCACATGC
ATATCTTGGCGGGGCGCCCGTTGGCATGGCCGCCGGGGTAGCTGAGGGAA
GGAGAGAGGGGGGAAGGGGGGAGAGGGAGGGAAGCAGGGGGAGGAAAAGA
ACGAATGACTGGGTGCTGGCCTTGCCGCTGGAATGTCGAACGTTTCTTTG
GCGGCGAGATCGAAAATTTTCTTGTGGGGAGAGCCATCGGCATTTTTTTG
AAAGTTCCATGATATTTTTCGAAGGAGCATTTACACGACGGAGTCGAAGG
TGGTTGAAGA
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protein sequence of rna8735

>rna8735-protein ID=rna8735-protein|Name=rna8735|organism=Nannochloropsis gaditana|type=polypeptide|length=736bp
MADAASDPTTSKFSHDVGMGTFVLALALGIVARACLSSLVRLPYTCLVLI
FGLLYGFLIYTEVGITGSDIFSRSADLWINISPEAILTVILPILIFGSSF
ASDLHLFLQQLTPVLTLAGPAVLVNAALLGLTAKYVLPYNWDWMTSLMVG
SMLSATDPVAVVAILKELGVVESLSILIDGESLLNDGFAIVLYTIFSRLV
VHEETLSVLETVESAVILCLGGPAIGLVVGALTSYILGVLLNDPASEITM
TILCGYGAYLLAELAEASGVLSMVVAGLYLSFHGLGRISARVTGSLKSFW
AMAAFISETIIFFVSGLIMAEKALISETVQGRDWGYLFLLYLIVNATRFV
GVFLFFPTLARGPYGINWRQAVLLSWGGLRGAVSLTLALVVSQEEGIPEE
TRALILFFTAGIVLLTILINGSTCKLVLQKLKLNNPTRVEQELYIRAMNL
IENELEVSLLKLKNDKYLGNADWNVVYRYLPVFSPQIYWHRVREGHICLD
EAEIALVGRYVREEEEEKEGGEEGGWKEGRKRSHSLMGPTMVGSGPGKLL
GPLFSCCGGSREGGGGGGSKYEELPPRLRHRWREYTTRFNGKLKSGIDGE
RLSGIRKQVWESLALARGVFPPATPSALPPPPPPSHPHAFGLLPLPSWVH
GEEKGEKGGRDGKAKEGREQGGKGVRGREGKRRLALPTCHARHGERGGEG
RAEGGREGRRRRRERAARPRAPGLSAPRLQAPPLPR
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mRNA from alignment at KK037250.1:38391..42275+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8735 ID=rna8735|Name=rna8735|organism=Nannochloropsis gaditana|type=mRNA|length=3885bp|location=Sequence derived from alignment at KK037250.1:38391..42275+ (Nannochloropsis gaditana)
AGGGCgcgcgggagaagaaaaagacgatCCAGACGCGCCGACCACAGAGA GTGCGACCGTACACCTCTTCCGGCGCCATCACGCAGGCAGCTTTCAGGAG TACCCTGCTGAAGGGATTAAAATACCCATGGCAGACGCTGCCAGTGACCC CACCACCTCAAAATTTTCTCACGATGTAGGCATGGGGACTTTCGTCTTGG CTTTGGCGTTGGGAATTGTAGCCCGGGCCTGCCTCTCATCCTTGGTCCGT CTCCCGTACACgtgcctcgtcctcatcttcggACTTCTCTATGGCTTTCT TATCTACACGGAAGTCGGGATCACGGGATCGGACATTTTCAGTCGATCTG CAGACCTGTGGATCAATATCTCGCCCGAAGCTATCTTGACGGTGATCCTG CCTATCCTGATCTTCGGTTCGTCCTTCGCCAGTGACCTTCACCTGTTCTT GCAGCAGCTGACTCCTGTGTTGACGCTTGCCGGGCCTGCTGTGCTCGTGA ACGCAGCACTGCTGGGGCTGACGGCCAAATACGTGCTACCGTACAATTGG GACTGGATGACCTCACTTATGGTAGGGTCGATGCTGTCAGCGACAGACCC tgtggccgtggtggcgatATTGAAGGAGCTGGGAGTGGTGGAAAGCCTGT CCATCCTGATCGACGGGGAGAGCTTGCTGAACGACGGCTTTGCCATCGTC CTGTACACGATATTCAGCCGACTGGTGGTACACGAAGAGACCCTGTCCGT CTTGGAGACGGTGGAGTCCGCCGTCATCCTCTGTCTGGGCGGGCCGGCCA TAGGGCTAGTGGTAGGGGCGTTGACCAGCTACATCTTAGGCGTGCTTTTG AACGACCCAGCGTCGGAAATCACGAGTGAGTGCGTGGAGGTTACGTTTGG GACGGTATTACCCGGTGAATGTGGACTGTGTGGCCCCATCGGGCATGGGA GGCCGCCTGGCAGGATCTCATGGGGGCCGCAGACTGACAGAAGGTTTCAC CGCATACCACACTCTCACCCATTTTTTCCCATCGTCCCGGTCTCTTCTGC CAGTGACCATCCTCTGCGGCTACGGTGCCTACCTCCTTGCCGAGCTCGCC GAAGCCTCGGGTGTCCTCTCCATGGTGGTGGCCGGTCtctacctctcctt ccacggtTTAGGCCGTATCTCCGCCCGCGTCACCGGTTCGCTCAAGTCCT TCTGGGCTATGGCGGCATTCATCAGCGAGACCATTATTTTCTTTGTCAGC GGCTTGAtcatggcggagaaagcccTGATTTCCGAGACGGTACAGGGCCG CGACTGGGgctacctcttccttctctacCTGATCGTAAACGCCACCCGCT TCGTCGGggttttcctcttcttccccaccttaGCCCGTGGTCCCTACGGT ATCAATTGGCGCCAAGCCGTTCTGCTCTCGTGGGGAGGATTGCGGGGTGC AGTCTCCTTAACTTTGGCCTTGGTCGTGAGTCAGGAAGAGGGAATTCCGG AGGAAACCCGCGcactcatcctcttcttcacggCTGGCATTGTCCTTCTG ACCATATTGATCAACGGTTCTACTTGCAAGCTCGTGCTTCAGAAGCTCAA GCTGAACAATCCTACCCGGGTGGAGCAGGAACTTTACATTCGCGCTATGA ACCTGATCGAAAACGAGCTGGAGGTGTCGTTGCTGAAGCTCAAAAACGAT AAGTACCTGGGAAATGCGGATTGGAACGTGGTTTATCGTTATCTGCCCGT ATTCTCGCCGCAAATCTATTGGCACCGTGTAAGGGAAGGGCACATTTGtc tggacgaggcagagatTGCCTTAGTGGGCCGGTAcgtgcgggaagaggag gaggaaaaagaaggaggggaggaaggcgggtggaaggaaggacggaaacG AAGCCACAGTTTGATGGGGCCCACTATGGTGGGGTCGGGCCCCGGGAAGC TCTTGggccccctcttctcctgctgtggagggagtcgggagggcggagga gggggaggaagcaagtaCGAGGAGCTACCCCCCCGCTTGCGTCATCGCTG GCGGGAGTACACGACCCGTTTCAACGGAAAATTAAAATCTGGGATCGACG GAGAGAGATTGAGCGGGATTCGGAAGCAAGTGTGGGAGAGCTTAGCATTG GCCCGTGGCGTgtttcctcccgccaccccttcggccctccctccgccccc ccctccctctcacccgcATGCCTTCGGTTTGttgcccctcccgtcctggg tgcacggggaggagaagggtgagaagggtggaagggatggcaaggcaaag gaggggagggagcagggaggcaagggggtccgggggcgggaaggaaagcg gcgGTTGGCACTTCCGACGTGCCACGCGCGACATGGAGAgcgcgggggag aaggaagggcagaaggagggagggagggaaggaggagaaggagagagcgt gCTGCCCGCCCAAGGGCCCCTGGACTTTCAGCCCCTCGTCTCCAGGCACC ACCACTCCCTCGTTgacccaccccctccccaggTCCTCAAGGGGTCCCCG CAGCGGCCCATGCCCGTGCTCCCCGAGGCCTCCCGGTCGTTGCCTGCTGC TTCGGTCCCCCCCTCTCGGAACCTCTTTGCGAACCTCTTCaccgctcccg ctccccctcctcgtccatcctcccacgcccctgccgccgcctccctccca tccgtCGACGCCAGCTTGGACCCGCCCGTCAATGTGGAGaaccctcccct ccctccctccttccctccctccctccgtccctcctcgcgggcGCTCAGGG AAGCCCGCATTCGCCTGCTCACGGTTCTCCGGCATGtctattcctcctcc ttccactccggcctcctctcccccccaggcctccgAGCTTTTGAACGGAA CCTCTCCATACTCATCAcccagccttccctccccctcaacgAATGGGCGG GTCTGGAGGGACACATTCTACTTCCGTTACGGGCCGTGAAAGCACGGCCC AACTGGCGGCGATTGCCGGTGGTGGGGGGCGCCGTCGAgtttttcctctt tcaaaaGTTGGCGTTCTTCTTTGAATTGGCCGTCGTCTTTATCGAAGCGC ATTCGAGCATCAACATCAAATTGAGCGAACTCTTCGGTAAAAACGGGCCC GTGACCCGGCAGCtcgagaaggaagtggaggaggaagtgggcaaggccaa ggccgccctGGAAGAGTTCgtgcccgtcttccccgacATCATCAACAGCG TCAAGACGGAAATGGCGGCGCGCGTCCTCCTGCACAAGTGTCGCTccatg ctggaggcggccgaggagagCGGCTCCTTGGAAACGCGGGAGTTCGAAGA CGCGATCCGGGAGGTAAGTCTTACATTAGTGCGTTAGGTTTAAGATATGT GAAGGTGTGTATATGGGGAACGGTCGTGCGTGAGTACCGACcttggcctc cctcgtcttcggtGGGTAACCGAAATATGCTATCACCCTTTGCCACCCAC CGAGAAAAATGCACTCAGATCTTGCTTTTTCCTGGCCCCtttcctggcct ccctccctccctccctccctccctccttccctccctccctcccacccagg TGGACGACTCCATGGTCAAGCTCTACGACCACACCCACGccgaggccccc gccccccgttcctccctcctggccagcctctccttcctccgcttcctccc tccctcccagcgcgACAGTCTCTTCGcatcccctgcctcccccttctgcc GCGACGTGTACGTCCGGAGCGacacctgcttcctccccaaaacctcctcc ctcccttcctccccccctccttccctcccgggcTGGTACGTGATAGTCCG GGGCTCCGTGGCGGTGGATcccgacgtggaggagg
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Coding sequence (CDS) from alignment at KK037250.1:38391..42275+

>rna8735 ID=rna8735|Name=rna8735|organism=Nannochloropsis gaditana|type=CDS|length=4422bp|location=Sequence derived from alignment at KK037250.1:38391..42275+ (Nannochloropsis gaditana)
ATGGCAGACGCTGCCAGTGACCCCACCACCTCAAAATTTTCTCACGATGT
AGGCATGGGGACTTTCGTCTTGGCTTTGGCGTTGGGAATTGTAGCCCGGG
CCTGCCTCTCATCCTTGGTCCGTCTCCCGTACACgtgcctcgtcctcatc
ttcggACTTCTCTATGGCTTTCTTATCTACACGGAAGTCGGGATCACGGG
ATCGGACATTTTCAGTCGATCTGCAGACCTGTGGATCAATATCTCGCCCG
AAGCTATCTTGACGGTGATCCTGCCTATCCTGATCTTCGGTTCGTCCTTC
GCCAGTGACCTTCACCTGTTCTTGCAGCAGCTGACTCCTGTGTTGACGCT
TGCCGGGCCTGCTGTGCTCGTGAACGCAGCACTGCTGGGGCTGACGGCCA
AATACGTGCTACCGTACAATTGGGACTGGATGACCTCACTTATGGTAGGG
TCGATGCTGTCAGCGACAGACCCtgtggccgtggtggcgatATTGAAGGA
GCTGGGAGTGGTGGAAAGCCTGTCCATCCTGATCGACGGGGAGAGCTTGC
TGAACGACGGCTTTGCCATCGTCCTGTACACGATATTCAGCCGACTGGTG
GTACACGAAGAGACCCTGTCCGTCTTGGAGACGGTGGAGTCCGCCGTCAT
CCTCTGTCTGGGCGGGCCGGCCATAGGGCTAGTGGTAGGGGCGTTGACCA
GCTACATCTTAGGCGTGCTTTTGAACGACCCAGCGTCGGAAATCACGATG
ACCATCCTCTGCGGCTACGGTGCCTACCTCCTTGCCGAGCTCGCCGAAGC
CTCGGGTGTCCTCTCCATGGTGGTGGCCGGTCtctacctctccttccacg
gtTTAGGCCGTATCTCCGCCCGCGTCACCGGTTCGCTCAAGTCCTTCTGG
GCTATGGCGGCATTCATCAGCGAGACCATTATTTTCTTTGTCAGCGGCTT
GAtcatggcggagaaagcccTGATTTCCGAGACGGTACAGGGCCGCGACT
GGGgctacctcttccttctctacCTGATCGTAAACGCCACCCGCTTCGTC
GGggttttcctcttcttccccaccttaGCCCGTGGTCCCTACGGTATCAA
TTGGCGCCAAGCCGTTCTGCTCTCGTGGGGAGGATTGCGGGGTGCAGTCT
CCTTAACTTTGGCCTTGGTCGTGAGTCAGGAAGAGGGAATTCCGGAGGAA
ACCCGCGcactcatcctcttcttcacggCTGGCATTGTCCTTCTGACCAT
ATTGATCAACGGTTCTACTTGCAAGCTCGTGCTTCAGAAGCTCAAGCTGA
ACAATCCTACCCGGGTGGAGCAGGAACTTTACATTCGCGCTATGAACCTG
ATCGAAAACGAGCTGGAGGTGTCGTTGCTGAAGCTCAAAAACGATAAGTA
CCTGGGAAATGCGGATTGGAACGTGGTTTATCGTTATCTGCCCGTATTCT
CGCCGCAAATCTATTGGCACCGTGTAAGGGAAGGGCACATTTGtctggac
gaggcagagatTGCCTTAGTGGGCCGGTAcgtgcgggaagaggaggagga
aaaagaaggaggggaggaaggcgggtggaaggaaggacggaaacGAAGCC
ACAGTTTGATGGGGCCCACTATGGTGGGGTCGGGCCCCGGGAAGCTCTTG
ggccccctcttctcctgctgtggagggagtcgggagggcggaggaggggg
aggaagcaagtaCGAGGAGCTACCCCCCCGCTTGCGTCATCGCTGGCGGG
AGTACACGACCCGTTTCAACGGAAAATTAAAATCTGGGATCGACGGAGAG
AGATTGAGCGGGATTCGGAAGCAAGTGTGGGAGAGCTTAGCATTGGCCCG
TGGCGTgtttcctcccgccaccccttcggccctccctccgcccccccctc
cctctcacccgcATGCCTTCGGTTTGttgcccctcccgtcctgggtgcac
ggggaggagaagggtgagaagggtggaagggatggcaaggcaaaggaggg
gagggagcagggaggcaagggggtccgggggcgggaaggaaagcggcgGT
TGGCACTTCCGACGTGCCACGCGCGACATGGAGAgcgcgggggagaagga
agggcagaaggagggagggagggaaggaggagaaggagagagcgtgCTGC
CCGCCCAAGGGCCCCTGGACTTTCAGCCCCTCGTCTCCAGGCACCACCAC
TCCCTCGTTgaATGGCAGACGCTGCCAGTGACCCCACCACCTCAAAATTT
TCTCACGATGTAGGCATGGGGACTTTCGTCTTGGCTTTGGCGTTGGGAAT
TGTAGCCCGGGCCTGCCTCTCATCCTTGGTCCGTCTCCCGTACACgtgcc
tcgtcctcatcttcggACTTCTCTATGGCTTTCTTATCTACACGGAAGTC
GGGATCACGGGATCGGACATTTTCAGTCGATCTGCAGACCTGTGGATCAA
TATCTCGCCCGAAGCTATCTTGACGGTGATCCTGCCTATCCTGATCTTCG
GTTCGTCCTTCGCCAGTGACCTTCACCTGTTCTTGCAGCAGCTGACTCCT
GTGTTGACGCTTGCCGGGCCTGCTGTGCTCGTGAACGCAGCACTGCTGGG
GCTGACGGCCAAATACGTGCTACCGTACAATTGGGACTGGATGACCTCAC
TTATGGTAGGGTCGATGCTGTCAGCGACAGACCCtgtggccgtggtggcg
atATTGAAGGAGCTGGGAGTGGTGGAAAGCCTGTCCATCCTGATCGACGG
GGAGAGCTTGCTGAACGACGGCTTTGCCATCGTCCTGTACACGATATTCA
GCCGACTGGTGGTACACGAAGAGACCCTGTCCGTCTTGGAGACGGTGGAG
TCCGCCGTCATCCTCTGTCTGGGCGGGCCGGCCATAGGGCTAGTGGTAGG
GGCGTTGACCAGCTACATCTTAGGCGTGCTTTTGAACGACCCAGCGTCGG
AAATCACGATGACCATCCTCTGCGGCTACGGTGCCTACCTCCTTGCCGAG
CTCGCCGAAGCCTCGGGTGTCCTCTCCATGGTGGTGGCCGGTCtctacct
ctccttccacggtTTAGGCCGTATCTCCGCCCGCGTCACCGGTTCGCTCA
AGTCCTTCTGGGCTATGGCGGCATTCATCAGCGAGACCATTATTTTCTTT
GTCAGCGGCTTGAtcatggcggagaaagcccTGATTTCCGAGACGGTACA
GGGCCGCGACTGGGgctacctcttccttctctacCTGATCGTAAACGCCA
CCCGCTTCGTCGGggttttcctcttcttccccaccttaGCCCGTGGTCCC
TACGGTATCAATTGGCGCCAAGCCGTTCTGCTCTCGTGGGGAGGATTGCG
GGGTGCAGTCTCCTTAACTTTGGCCTTGGTCGTGAGTCAGGAAGAGGGAA
TTCCGGAGGAAACCCGCGcactcatcctcttcttcacggCTGGCATTGTC
CTTCTGACCATATTGATCAACGGTTCTACTTGCAAGCTCGTGCTTCAGAA
GCTCAAGCTGAACAATCCTACCCGGGTGGAGCAGGAACTTTACATTCGCG
CTATGAACCTGATCGAAAACGAGCTGGAGGTGTCGTTGCTGAAGCTCAAA
AACGATAAGTACCTGGGAAATGCGGATTGGAACGTGGTTTATCGTTATCT
GCCCGTATTCTCGCCGCAAATCTATTGGCACCGTGTAAGGGAAGGGCACA
TTTGtctggacgaggcagagatTGCCTTAGTGGGCCGGTAcgtgcgggaa
gaggaggaggaaaaagaaggaggggaggaaggcgggtggaaggaaggacg
gaaacGAAGCCACAGTTTGATGGGGCCCACTATGGTGGGGTCGGGCCCCG
GGAAGCTCTTGggccccctcttctcctgctgtggagggagtcgggagggc
ggaggagggggaggaagcaagtaCGAGGAGCTACCCCCCCGCTTGCGTCA
TCGCTGGCGGGAGTACACGACCCGTTTCAACGGAAAATTAAAATCTGGGA
TCGACGGAGAGAGATTGAGCGGGATTCGGAAGCAAGTGTGGGAGAGCTTA
GCATTGGCCCGTGGCGTgtttcctcccgccaccccttcggccctccctcc
gcccccccctccctctcacccgcATGCCTTCGGTTTGttgcccctcccgt
cctgggtgcacggggaggagaagggtgagaagggtggaagggatggcaag
gcaaaggaggggagggagcagggaggcaagggggtccgggggcgggaagg
aaagcggcgGTTGGCACTTCCGACGTGCCACGCGCGACATGGAGAgcgcg
ggggagaaggaagggcagaaggagggagggagggaaggaggagaaggaga
gagcgtgCTGCCCGCCCAAGGGCCCCTGGACTTTCAGCCCCTCGTCTCCA
GGCACCACCACTCCCTCGTTga
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Synonyms
Publications