rna8732, rna8732 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8732
Unique Name	rna8732
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1292
Alignment location	KK037250.1:28754..32011 +

Link to JBrowse

Properties


Property Name	Value
Product	trehalose synthase
Orig transcript id	gnl\|cribi\|Naga_100326g4.7805.mrna
Orig protein id	gnl\|cribi\|Naga_100326g4.7805
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:28754..32011 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100326g4	gene8464	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8732	rna8732-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21967.1	cds8703	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:28754..32011+
coding sequence from alignment at KK037250.1:28754..32011+

mRNA sequence

>rna8732 ID=rna8732|Name=rna8732|organism=Nannochloropsis gaditana|type=mRNA|length=1292bp
TTGGAGGGGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGAGAT
ATAAGGGTCAGGCCGGATTTTGCGCGGTGGATCTTTTCTGACAAGGGGAC
ACTTGACAGAAACTATTTGTTAAGATGGGAGACAATGGAGAGGGAGGGAG
GGTGGGAGGAAGGGAGTGAGGGTGGGAGGAAGGGAGGGACAGAGGCACGG
GTCTGTGCGTACCTGCACAGCGACATGGGGAAACGTGGAGGAATATGGCA
AGGAACACGCAGAGAAAGTCAACGTCTTGGCGTCCGTCTCCCTACCCGCT
TGGGGCGGAGGAGGAGGAAGGAGGTCGGCGGGCGCAGGAGGAAGGGGAGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCCGAACCACCCGACTCTG
GGCCGAGAGGAGGCGAGGAGGACGCTGTGACATTCTCGGAGGTAGAAGAA
GGGGAAGGTTTTTGGGCAACTGGAACGATGTCGCTTGCCACGGGCACAGA
GGGGGAAGGAAGAGGGGGGAAAGGAGAGGAGGAGGGCGGGGGGGAGGGAA
GAGGCAAAGTGGGGACCGAGGGCGAGGTGGAGATGGGGGGCGGTAAGGAG
GACGGCACCCAGCTGGCAGCTACGCAGGCGAGTGGAGAAAGCGCTGCATC
CTCCGCAACGGCGGGCGAGGGCGAGGGAGGGGCAACGGGAGGAGCCGAGA
TGGCCCCTGCCTGGTTCTCAGGTTCGATCCCCGCTTCGGTCTCTACCACG
GGGATGAAGGAAGGGTGGGGCAACTGTTCGGCGCACATGGGTCGAAGGAG
GGGCGAGCGAGGAGGGGAGGAGGATGATGTGCCGGTTGCGATGCCAGCGC
CCGTGACCATTGCGGTCGTTGTTGCTGTTGTTGTTGTTGTTGTTGTTGTT
GTCACAACTGTTGACTTCTCGGCAGCTGGCTTAGGAGCTTTTTTGTGTCC
TTTACTAGTCTTGGTCTTCTTTTTCCCCATACTTTTGATTTTTAATGGTA
AGCACTTCCCGGATGCGCCTGTCAAATGCATGAGGAAAGGTCATGATGCT
GGCACGGAATGTCAGAGAGAGATACAAGCCAAACCAAAGTAGAAATATTT
TACACGACAATGACCTTTGGGCCGTACCCACAGTCTATAGGCACGTTTGT
ACGTCTCAAGATTAAAAAAAGTAGCTAGATTCAAGCCTTATCATGCAAAG
AATAAGAAGTAGAAATCTCATCCTTCTAAGGTGATGGGGTGATGTATCCG
GTCCCTCGCAAGGCATATCTCTATAAACAACCCGCGAGACTC

protein sequence of rna8732

>rna8732-protein ID=rna8732-protein|Name=rna8732|organism=Nannochloropsis gaditana|type=polypeptide|length=973bp
MAIPGLSLPWNVTPLYLRLIKLSYFRIHHIVYISLFCLVEIKVATGTMAP
PSRYFPPTASTSTSTSGQSRFSTFEPQDLCRPQGSLHDGLPRSTRRQVQA
PDRIPQPIYLGIEVEVLESQEVVRYGLCAHDGSYTLDYYEETIDVSHCNT
TPEKVEFFEAHILQKLKEYQSSMNVKAHLIGLGLRVCNTMCFLKRGCATM
CVDYGRERVFSVYGSDVPSLSSRVWQELDAIPFVMRTRGQTLDERASTAV
RQAVVALSPQYPGNIPRVVVGYRNEVEVDCNMDIHLYDLEHYRQFCSEGT
WHAVLAMADELRRRQIKVSYFNSTPQGGGVALMRHALFRLSHYLRVNTHW
FVATPSPDVFNITKRKFHNVLQGVAPPNVFLEEEEKKKWLEWTQMNVERH
WDDPDGPLMTSDVIVIDDPQVCGLIPWIRRLNPEAKIVYRSHIEVRADLI
RDNPQGPQAQTWDFLWSAIKQADLFVSHPVKNFVPDDVPLENVVMMPAAT
DPLDGLNKPLDDFNVTYYQQVFNRICYDQGSRRVDWDRPYITQVARFDPS
KGIPDVLLAYHRLYCKFLDAGEKNRVEPRRSHGQGTKKAEPANVGDGGQQ
ETEEARGEAESTEEDTGWSALHRQLRMEETTLPQLIICGHGSVDDPDGTW
VFEEAHTMLNKEDFRDLWPHVTIVRIPPCDQILNVVLRGAVCALQLSHRE
GFEVKVTEAMAKGVPVVAYKAGGIPFQIRDKENGYLAPVGDTETVAEHVY
SLCTDAELREKLSRKAREEIGEDFFTVHNWANWAYIWLKINNKPRAPPTL
EEVLEVKKQTEKGEKDQQVKRDVEEGEGGMEGNGGRSDEEETLAALGEVC
LNVDGSRSPCAPPLHRRRKAAHDVLGGGRWVKDLWQAEYVKGETEEGVPR
YKELHARHVEAHEARTWDRNTTLRQEQFTPPPFLIDQRRGNIEGGDDRLP
RIVYTPGPNSKLWVRDAGDLEEA

mRNA from alignment at KK037250.1:28754..32011+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8732 ID=rna8732|Name=rna8732|organism=Nannochloropsis gaditana|type=mRNA|length=3258bp|location=Sequence derived from alignment at KK037250.1:28754..32011+ (Nannochloropsis gaditana)
ATGGCCATACCTGGGCTTAGCCTGCCGTGGAACGTCACGCCATTATATTT
GCGTCTCATAAAGTTAAGTTATTTTCGTATTCATCACATTGTCTACATCT
CTTTGTTTTGCCTTGTGGAAATCAAGGTTGCAACAGGCACTAtggcgcct
ccttctcgttaCTTTCCACCGACTGCATCCACATCTACGAGTACCTCTGG
GCAGTCTCGGTTTTCTACGTTTGAGCCTCAGGATTTGTGCCGCCCTCAAG
GTTCGCTTCACGatggccttcctcgctccaCCCGCCGGCAAGTCCAAGCT
CCGGATCGTATTCCACAGCCCATCTATCTGGGCATTGAAGTGGAGGTACT
AGAGTCtcaggaggtggtgcggTACGGATTGTGCGCACATGACGGCTCCT
ACACGCTGGACTACTACGAGGAAACTATCGACGTTAGTCATTGCAATACG
ACGCCGGAGAAAGTTGAGTTTTTTGAAGCACATATTCTCCAGAAGCTGAA
AGAATACCAATCGAGCATGAACGTCAAGGCTCATTTAATTGGCCTGGGCC
TGCGAGTCTGTAACACCATGTGTTTTTTGAAACGGGGCTGCGCTACCATG
TGTGTGGACTACGGACGTGAACGCGTGTTCAGTGTGTACGGCTCCGACgt
accctccttgtcttcgcgCGTCTGGCAGGAACTTGACGCCATCCCCTTCG
TCATGCGGACACGGGGCCAAACACTGGACGAGCGCGCCAGCACCGCGGTG
CGTCAGGCGGTAGTGGCCTTATCCCCGCAATACCCCGGGAACATCCCGAG
AGTGGTGGTGGGCTACCGGAACGAGGTAGAGGTCGATTGCAACATGGACA
TCCATTTGTATGACCTGGAGCATTACCGACAATTTTGCTCGGAAGGTACC
TGGCATGCGGTGTTGGCCATGGCCGACGAGCTACGGCGGCGGCAAATCAA
GGTTTCTTACTTCAACTCCACCCctcaaggggggggagtggctTTGATGC
GCCACGCCCTGTTCCGACTGAGCCATTACCTTCGGGTGAACACGCATTGG
TTCGTGGCGACGCCGTCTCCGGATGTATTCAACATCACCAAGCGGAAATT
CCACAACGTCCTGCAGGGCGTCGCGCCCCCGAATGTCtttttggaagagg
aagagaagaagaagtggCTGGAGTGGACGCAAATGAATGTGGAACGTCAC
TGGGACGACCCCGATGGACCCTTGATGACATCGGACGTGATTGTCATTGA
TGACCCGCAGGTTTGTGGCCTGATCCCGTGGATCCGACGCTTGAATCCAG
AGGCGAAGATCGTCTACCGTTCTCACATTGAAGTCCGAGCCGACCTCATC
CGCGACAACCCGCAGGGGCCGCAGGCGCAGACCTGGGACTTTCTGTGGTC
TGCGATCAAGCAAGCCGACCTCTTTGTTTCCCACCCCGTGAAGAACTTTG
TACCCGACGACGTGCCTTTGGAAAACGTGGTGATGATGCCCGCCGCCACA
GACCCGTTGGACGGATTGAATAAACCCCTGGACGACTTCAACGTCACCTA
TTATCAACAGGTTTTCAATCGTATCTGCTACGATCAGGGCTCTCGGCGCG
TAGATTGGGACCGTCCCTACATCACCCAAGTCGCGCGCTTCGACCCTTCC
AAGGGCATCCCGGACGTCCTCTTAGCCTATCATCGACTTTACTGCAAATT
TCTTGacgcgggggaaaagaatcGTGTCGAGCCCCGTCGCAGCCATGGAC
AGGGCACGAAAAAGGCGGAACCTGCCAATGTGGGGGATGGCGGCCAGCAG
GAGACTGAGGAGGCGCGTGGGGAGGCTGAGTCGACAGAGGAGGACACCGG
GTGGTCTGCGCTACACAGGCAGCTTCGCATGGAGGAAACGACGCTGCCCC
AGCTCATTATTTGCGGACACGGCTCCGTGGACGATCCGGACGGGACGTGG
GTGTTTGAAGAGGCGCATACGATGCTGAACAAGGAGGACTTCCGGGACCT
CTGGCCCCACGTGACCATCGTGCGCATACCCCCTTGCGACCAGATTTTGA
ATGTGGTTTTACGGGGCGCCGTCTGCGCCTTGCAGCTCAGCCATCGCGAA
GGCTTTGAAGTGAAAGTGACGGAAGCCATGGCCAAAGGTGTGCCGGTCGT
GGCTTacaaggcggggggcatTCCTTTCCAGATCCGGGACAAGGAAAACG
GTTATCTGGCTCCGGTAGGTGATACAGAGACGGTAGCAGAGCACGTGTAT
TCCTTGTGTACGGATGCCGAGTTGAGGGAAAAGCTCTCACGGAAGGCCCG
GGAAGAGATTGGAGAAGATTTCTTTACGGTCCATAATTGGGCGAATTGGG
CCTATATTTGGCTCAAAATTAATAACAAACCTCgtgccccgcccaccctt
GAGGAGGTACTGGAGGTTAAAAAACAAacagaaaaaggggagaaagaccA
GCAGGTCAAGCGTGATgttgaggagggggagggagggatggaaggtaACG
GTGGGCgaagcgacgaggaggagacgctggCTGCATTGGGCGAGGTCTGT
CTGAATGTGGACGGTAGTCGCAGTCCTTGTGCGCCCCCGTTGCACCGACG
GCGCAAGGCAGCTCATGACGTgctggggggagggcggtgggtCAAGGACT
TGTGGCAGGCCGAATACGTGAAGGGCGAGACGGAAGAGGGGGTGCCACGT
TACAAAGAACTACATGCCCGTCACGTCGAGGCGCACGAGGCCAGGACGTG
GGACCGCAACACCACCCTTCGACAGGAACAATTCAcgccacctcccttct
tgaTCGACCAGCGAAGAGGAAACATCGAGGGCGGTGACGACAGGCTCCCG
CGCATCGTGTACACGCCCGGGCCGAACAGCAAGCTCTGGGTCCGAGATGC
CGGcgatttggaggaggcgtgagaagaaaggaatggCCCATGTACGGAGA
GTAAGAGAAAGATAGAGGGATTGGGTTAGGGTTGACCCTAACCCGAAGCC
TACCAGAAGTATATAGCTTTGTGATGTCAGAGGGAAAATGCAGATCACCC
ACAGCGACGAAGACGGCCTCTTGGCGTGTACAGGCTTGAAAAGAGGGATG
AAGTAATGGCATGGTAGGGCATTGGAGTTGTATGGCTGGAGGCTTGCATG
GCTATCAACGACTTGCCATTCCAAGTGTCGGATATATCTTGGCATGGCAT
GTGAGGTTGTGGGAAACACTTTTTCTTGGAAACAATGCTTTTTTTGAGTG
TGTTACAA

Coding sequence (CDS) from alignment at KK037250.1:28754..32011+

>rna8732 ID=rna8732|Name=rna8732|organism=Nannochloropsis gaditana|type=CDS|length=2922bp|location=Sequence derived from alignment at KK037250.1:28754..32011+ (Nannochloropsis gaditana)
ATGGCCATACCTGGGCTTAGCCTGCCGTGGAACGTCACGCCATTATATTT
GCGTCTCATAAAGTTAAGTTATTTTCGTATTCATCACATTGTCTACATCT
CTTTGTTTTGCCTTGTGGAAATCAAGGTTGCAACAGGCACTAtggcgcct
ccttctcgttaCTTTCCACCGACTGCATCCACATCTACGAGTACCTCTGG
GCAGTCTCGGTTTTCTACGTTTGAGCCTCAGGATTTGTGCCGCCCTCAAG
GTTCGCTTCACGatggccttcctcgctccaCCCGCCGGCAAGTCCAAGCT
CCGGATCGTATTCCACAGCCCATCTATCTGGGCATTGAAGTGGAGGTACT
AGAGTCtcaggaggtggtgcggTACGGATTGTGCGCACATGACGGCTCCT
ACACGCTGGACTACTACGAGGAAACTATCGACGTTAGTCATTGCAATACG
ACGCCGGAGAAAGTTGAGTTTTTTGAAGCACATATTCTCCAGAAGCTGAA
AGAATACCAATCGAGCATGAACGTCAAGGCTCATTTAATTGGCCTGGGCC
TGCGAGTCTGTAACACCATGTGTTTTTTGAAACGGGGCTGCGCTACCATG
TGTGTGGACTACGGACGTGAACGCGTGTTCAGTGTGTACGGCTCCGACgt
accctccttgtcttcgcgCGTCTGGCAGGAACTTGACGCCATCCCCTTCG
TCATGCGGACACGGGGCCAAACACTGGACGAGCGCGCCAGCACCGCGGTG
CGTCAGGCGGTAGTGGCCTTATCCCCGCAATACCCCGGGAACATCCCGAG
AGTGGTGGTGGGCTACCGGAACGAGGTAGAGGTCGATTGCAACATGGACA
TCCATTTGTATGACCTGGAGCATTACCGACAATTTTGCTCGGAAGGTACC
TGGCATGCGGTGTTGGCCATGGCCGACGAGCTACGGCGGCGGCAAATCAA
GGTTTCTTACTTCAACTCCACCCctcaaggggggggagtggctTTGATGC
GCCACGCCCTGTTCCGACTGAGCCATTACCTTCGGGTGAACACGCATTGG
TTCGTGGCGACGCCGTCTCCGGATGTATTCAACATCACCAAGCGGAAATT
CCACAACGTCCTGCAGGGCGTCGCGCCCCCGAATGTCtttttggaagagg
aagagaagaagaagtggCTGGAGTGGACGCAAATGAATGTGGAACGTCAC
TGGGACGACCCCGATGGACCCTTGATGACATCGGACGTGATTGTCATTGA
TGACCCGCAGGTTTGTGGCCTGATCCCGTGGATCCGACGCTTGAATCCAG
AGGCGAAGATCGTCTACCGTTCTCACATTGAAGTCCGAGCCGACCTCATC
CGCGACAACCCGCAGGGGCCGCAGGCGCAGACCTGGGACTTTCTGTGGTC
TGCGATCAAGCAAGCCGACCTCTTTGTTTCCCACCCCGTGAAGAACTTTG
TACCCGACGACGTGCCTTTGGAAAACGTGGTGATGATGCCCGCCGCCACA
GACCCGTTGGACGGATTGAATAAACCCCTGGACGACTTCAACGTCACCTA
TTATCAACAGGTTTTCAATCGTATCTGCTACGATCAGGGCTCTCGGCGCG
TAGATTGGGACCGTCCCTACATCACCCAAGTCGCGCGCTTCGACCCTTCC
AAGGGCATCCCGGACGTCCTCTTAGCCTATCATCGACTTTACTGCAAATT
TCTTGacgcgggggaaaagaatcGTGTCGAGCCCCGTCGCAGCCATGGAC
AGGGCACGAAAAAGGCGGAACCTGCCAATGTGGGGGATGGCGGCCAGCAG
GAGACTGAGGAGGCGCGTGGGGAGGCTGAGTCGACAGAGGAGGACACCGG
GTGGTCTGCGCTACACAGGCAGCTTCGCATGGAGGAAACGACGCTGCCCC
AGCTCATTATTTGCGGACACGGCTCCGTGGACGATCCGGACGGGACGTGG
GTGTTTGAAGAGGCGCATACGATGCTGAACAAGGAGGACTTCCGGGACCT
CTGGCCCCACGTGACCATCGTGCGCATACCCCCTTGCGACCAGATTTTGA
ATGTGGTTTTACGGGGCGCCGTCTGCGCCTTGCAGCTCAGCCATCGCGAA
GGCTTTGAAGTGAAAGTGACGGAAGCCATGGCCAAAGGTGTGCCGGTCGT
GGCTTacaaggcggggggcatTCCTTTCCAGATCCGGGACAAGGAAAACG
GTTATCTGGCTCCGGTAGGTGATACAGAGACGGTAGCAGAGCACGTGTAT
TCCTTGTGTACGGATGCCGAGTTGAGGGAAAAGCTCTCACGGAAGGCCCG
GGAAGAGATTGGAGAAGATTTCTTTACGGTCCATAATTGGGCGAATTGGG
CCTATATTTGGCTCAAAATTAATAACAAACCTCgtgccccgcccaccctt
GAGGAGGTACTGGAGGTTAAAAAACAAacagaaaaaggggagaaagaccA
GCAGGTCAAGCGTGATgttgaggagggggagggagggatggaaggtaACG
GTGGGCgaagcgacgaggaggagacgctggCTGCATTGGGCGAGGTCTGT
CTGAATGTGGACGGTAGTCGCAGTCCTTGTGCGCCCCCGTTGCACCGACG
GCGCAAGGCAGCTCATGACGTgctggggggagggcggtgggtCAAGGACT
TGTGGCAGGCCGAATACGTGAAGGGCGAGACGGAAGAGGGGGTGCCACGT
TACAAAGAACTACATGCCCGTCACGTCGAGGCGCACGAGGCCAGGACGTG
GGACCGCAACACCACCCTTCGACAGGAACAATTCAcgccacctcccttct
tgaTCGACCAGCGAAGAGGAAACATCGAGGGCGGTGACGACAGGCTCCCG
CGCATCGTGTACACGCCCGGGCCGAACAGCAAGCTCTGGGTCCGAGATGC
CGGcgatttggaggaggcgtga

Synonyms

Publications