rna8729, rna8729 (mRNA) Nannochloropsis gaditana

Overview
Namerna8729
Unique Namerna8729
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length615
Alignment locationKK037250.1:12537..13873 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100565g3.8995.mrna
Orig protein idgnl|cribi|Naga_100565g3.8995
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:12537..13873 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100565g3gene8460Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8729rna8729-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21972.1cds8700Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8729 ID=rna8729|Name=rna8729|organism=Nannochloropsis gaditana|type=mRNA|length=615bp
TCCTCGGCGCCGGCTGTCGGGTCGGGACTCGGGTTAAGATTCATCAATGC
GTGCTCATGGATAATGTAACGGTCTTGGACGGGGTGACCCTTACCAACAC
GATCGTATGCTCGCACGCCACCGTCCAGGTGAGGCGCAATGAAAGGGGGG
GGGGGGGGGAGAAGGGTATAAAAAGGAGGACACAAACATGGTTGGAAGAC
GGTATGGAGGAGGTATGGATACACAACGTTTAGTGCGGATGGGGAAGGGA
GAGGAGGTCTTTCGTTGGATTAAGCGCTCGATTGCCACGTACGCCGACAA
CCTCCTGTCAAAGGGATGGTTCTGCATGGACCCTGTAGCCTCTTTCACGC
TCCCATTATTCCTCCATTTACCCCACTTGAACGAGAATTATGATCCGCTA
TACCTGCCTCATTCTCATTGGAACGACGACGGTCATTCTCATACGGAATA
TAGGAATCTTGCTCCCTCCAAGATTCGTTCGTCGGGTCCTACATGACGGT
GCCACCCAAGACAAAGTTAAAGAATGGAGAATTGCTACGGGACTGAACCA
GCCATGGAGACAGAGCGCATGACACGCTATCATTGAAAGCAAATTCATCT
TAAAGGATCTATCAA
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protein sequence of rna8729

>rna8729-protein ID=rna8729-protein|Name=rna8729|organism=Nannochloropsis gaditana|type=polypeptide|length=150bp
MLHCFCAGISIQARKGGDNAGGYSEACRAEIFSSPFLFSIILSHFAPRNN
LWYGQAGARKEGTLMAHVPHYSYPHHNHSLTHVLMLKLTFTPTLALPSAL
SPPSHLTCLKRAARGLDGLRSGHVAHLNSFFPFRHAEGSNHGKVSCYRGD
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mRNA from alignment at KK037250.1:12537..13873+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8729 ID=rna8729|Name=rna8729|organism=Nannochloropsis gaditana|type=mRNA|length=1337bp|location=Sequence derived from alignment at KK037250.1:12537..13873+ (Nannochloropsis gaditana)
ATGCTTCATTGTTTTTGTGCAGGAATTTCCATCCaggcgaggaagggtgg
agacAATGCAGGAGGTTATTCGGAAGCTTGCCGGGCTGaaattttctcct
cccctttccttttttccattATTTTATCTCACTTTGCCCCAAGGAACAAT
CTATGGTATGGACAAGCCGGCGCGCGAAAGGAAGGCACCCTCATGGCCCA
TGTTCCCCATTACTCTTACCCTCACCATAATCACTCTCTCACTCATGTCC
TCATGCTTAAGCTCACTTTTACCCCAACACTTGCTCTTCCTTCGGCCTTA
TCCCCACCATCACACCTCACCTGTCTCAAACGTGCCGCGCGCGGTCTCGA
TGGTCTCCGCTCCGGCCATGTTGCTCACCTgaattctttttttccttttc
gccATGCCGAAGGCAGCAATCATGGAAAAGTCTCTTGTTATCGGGGAGAT
TAACGTCATCGGAATAATAATTCTTGTTTTCGGTGCTCTGAACTTGGGCA
TGGTTCTCCTTAGTCCTGACAACTTCTGCCTCTACAAGGTATTGGCGGCC
AGAGCGAGGCTCTGCGTCGGGACGGGGAACGAGCGAAAGTTCATAGCGGC
ATACAGCGTGATAATCATTGTTGTCGGCACGCTGATCATGCTTCGCGTGT
TCTAAGATGTTTTGTTCATGTTCAAACAGAGCACGGTGGAACATCAACAC
ATCCATAAatccctttcttgcctcaacaagggaggtgaaggcgggGCGGC
GGAGATGCCCCGTGCTCTGGTGTACATGACTCTCGGAGAGGGGTCGGGGG
AGAAGTATGATTGATTCGAGTAGAGTACCAAGTGTAAATGCGAGGATGTT
CTGCAAACAAGCACGTTCAGGAAGGGGTGTGATTtgtttttggggggagg
gcaattCTTAGGATAGAAATGGGAACTTTTAAATTCATGTTGGATGGATC
TTAAAATTATTGCTTCATTTGCTATCTTAGTTTCTCTGACTAGACTGGTA
CTATATATACATGCTTCACGTCTGTCCCCCGGCATATATAATTCGAAACG
CACACGCAAAGCTCCAAAAATTACGTTTCAGCTGACCGCTCGACCAATGT
AAATGCCTGAGTATACGCGAAGGCGTCTTGGACTTGCGAGGTCACCACGA
TGGAATAGTTTCCTGTGAGGTGCTTTGTCTTGGAcaccctccacgtccat
tcCTGCGAAGGGCCCAAGGAGTGTAATGGCAAGGAAGCagtggtgggcgg
gggggagattgggagaaggacatggcACGGACACTGCCTCCAAGCCTTAC
ACATTTCTACGGCGTCTGAGAGCTTCCACGTTTGAGG
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Coding sequence (CDS) from alignment at KK037250.1:12537..13873+

>rna8729 ID=rna8729|Name=rna8729|organism=Nannochloropsis gaditana|type=CDS|length=453bp|location=Sequence derived from alignment at KK037250.1:12537..13873+ (Nannochloropsis gaditana)
ATGCTTCATTGTTTTTGTGCAGGAATTTCCATCCaggcgaggaagggtgg
agacAATGCAGGAGGTTATTCGGAAGCTTGCCGGGCTGaaattttctcct
cccctttccttttttccattATTTTATCTCACTTTGCCCCAAGGAACAAT
CTATGGTATGGACAAGCCGGCGCGCGAAAGGAAGGCACCCTCATGGCCCA
TGTTCCCCATTACTCTTACCCTCACCATAATCACTCTCTCACTCATGTCC
TCATGCTTAAGCTCACTTTTACCCCAACACTTGCTCTTCCTTCGGCCTTA
TCCCCACCATCACACCTCACCTGTCTCAAACGTGCCGCGCGCGGTCTCGA
TGGTCTCCGCTCCGGCCATGTTGCTCACCTgaattctttttttccttttc
gccATGCCGAAGGCAGCAATCATGGAAAAGTCTCTTGTTATCGGGGAGAT
TAA
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Synonyms
Publications