rna8715, rna8715 (mRNA) Nannochloropsis gaditana

Overview
Namerna8715
Unique Namerna8715
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length471
Alignment locationKK037249.1:644845..645708 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101706g2.9460.mrna
Orig protein idgnl|cribi|Naga_101706g2.9460
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:644845..645708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101706g2gene8446Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8715rna8715-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21987.1cds8686Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8715 ID=rna8715|Name=rna8715|organism=Nannochloropsis gaditana|type=mRNA|length=471bp
ATGCGGACGCATTTTGGGGGATGTCGTTGTCCTGTAACACCCACCTCTGC
CCAACGTTCAACCTCAAAGCTGATTCGATCGCCCCCCTACCATCTTGTAT
TTTCCGGGGAAATCGACAGGCGCAACGCAACCTACCTGACTGTATTGGAG
GTTGAAATAGCACGTGCTGCCGCAAAGTACCCGTGTAAGTTTTGGCAGTG
GTGTTTATCAAGCCTGCCAGCGGTAGTTTCCTCTCTCCAAGCGAGCAGCA
CGTGGAGGGGAGAGCAGGGAAAAACTAACCCAACACAGACAAGGGTTTTT
GCACGGCGCACAAGCACGCGGCGCTTTTCTCGAACTCTGTGGAAGTTGGA
GACATTTTGGGTGAATAACACGCGTTGGCGCCCCATCATAAAGCATTCGG
GTTGCGTGGTCCTTCCAAAGACATCCAAGTCGGGCGCCGTTGGACGTTTG
CTGGCAGTAAAACAGGCGTGA
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protein sequence of rna8715

>rna8715-protein ID=rna8715-protein|Name=rna8715|organism=Nannochloropsis gaditana|type=polypeptide|length=102bp
MGQNQSSAPSQAEVSSALAVMEAVTQEDCPRWTKKKLKELMRAMKALGAR
SGKPTLIYRCDLEAALKKTGLQDTVEGEILGNERGGGRKRAGQRHSDEVG
RQ
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mRNA from alignment at KK037249.1:644845..645708+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8715 ID=rna8715|Name=rna8715|organism=Nannochloropsis gaditana|type=mRNA|length=864bp|location=Sequence derived from alignment at KK037249.1:644845..645708+ (Nannochloropsis gaditana)
CAGTTGCCTCGCTCAAAAACACTCACCACAGCTTCAGCGACAGGCTAAAC
TACAAGCACGTCGTGGCAACAGGCACGAAGCCTCCCAGCTATTGACCTGG
TCGAGGTCGTTGCTCAAGAAAAATTGTGCGTCAAGGGTTTTTTCGTCTGC
CGCCTGGTTGCTGTGCTGTCCGCTAGAGACTTCGTCAACCCAACATTTCC
ATCCATAGCCTCTCCTGCCACCTCCCGAATCCAGCCCTTCCAACAGCAAC
AAGGCGTGCACACACCATTCCAGCTTAAACATGGGGCAAAATCAATCGAG
TGCTCCTTCCCAGGCTGAGGTATCATCAGCCCtggcggtgatggaggccg
tgACCCAGGAAGATTGCCCTCGATGGACGAAAAAGAAACTGAAGGAGTTA
ATGCGGGCCATGAAAGCCTTGGGGGCACGCTCGGtaggtggagaggaggc
aaggtGGAAAGGAAATGCTCATTGCATGAAGTGCTCCTTGAAACGGGAGG
GCACGTCAGTAGATACGGGCATGATGATGGAATTCGTCGAGGatcacctc
ctgcccctcccacgccatcTCCGCGTCAGGGAAAGCCAACGCTCATCTAC
CGGTGTGATCTGGAGGCAGCGTtgaagaagacggggctCCAGGATACGGT
AGAAGGAGAAATATTGGGTaatgagaggggagggggaaggaagagagcag
gACAGCGCCACAGTGATGAGGTTGGAAGACAATGAAAGCGggcgatggaa
ggaagcgggaggacggaaaggCTGTACATCGGTCGTTCTAGAAGAACGTC
CTTTCTACTTTGTGATAGGGCAAAACACGAGCCACGGACCCGGCCAAAGC
TCacgccccacccc
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Coding sequence (CDS) from alignment at KK037249.1:644845..645708+

>rna8715 ID=rna8715|Name=rna8715|organism=Nannochloropsis gaditana|type=CDS|length=618bp|location=Sequence derived from alignment at KK037249.1:644845..645708+ (Nannochloropsis gaditana)
ATGGGGCAAAATCAATCGAGTGCTCCTTCCCAGGCTGAGGTATCATCAGC
CCtggcggtgatggaggccgtgACCCAGGAAGATTGCCCTCGATGGACGA
AAAAGAAACTGAAGGAGTTAATGCGGGCCATGAAAGCCTTGGGGGCACGC
TCGGGAAAGCCAACGCTCATCTACCGGTGTGATCTGGAGGCAGCGTtgaa
gaagacggggctCCAGGATACGGTAGAAGGAGAAATATTGGGTaatgaga
ggggagggggaaggaagagagcaggACAGCGCCACAGTGATGAGGTTGGA
AGACAATGAATGGGGCAAAATCAATCGAGTGCTCCTTCCCAGGCTGAGGT
ATCATCAGCCCtggcggtgatggaggccgtgACCCAGGAAGATTGCCCTC
GATGGACGAAAAAGAAACTGAAGGAGTTAATGCGGGCCATGAAAGCCTTG
GGGGCACGCTCGGGAAAGCCAACGCTCATCTACCGGTGTGATCTGGAGGC
AGCGTtgaagaagacggggctCCAGGATACGGTAGAAGGAGAAATATTGG
GTaatgagaggggagggggaaggaagagagcaggACAGCGCCACAGTGAT
GAGGTTGGAAGACAATGA
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Synonyms
Publications