rna8713, rna8713 (mRNA) Nannochloropsis gaditana

Overview
Namerna8713
Unique Namerna8713
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length729
Alignment locationKK037249.1:642090..642610 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102688g1.7405.mrna
Orig protein idgnl|cribi|Naga_102688g1.7405
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:642090..642610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102688g1gene8444Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8713rna8713-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21989.1cds8684Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8713 ID=rna8713|Name=rna8713|organism=Nannochloropsis gaditana|type=mRNA|length=729bp
ATGGACGCTGAATCCACCAAGATGGGGTCGTCCGCCACGTCTTTTTCTCC
CTCCCTCCCTCCTTCCCTTTCCACCTCCTCGCTGCCGGAGGCAGACGGCG
AGATAGCGACGGAACAAAATAAAACCACGGACCATGCCAAACTCACTTTT
CAGGCGACGGTCGTGCCCGCAAAATTCGCCACAGCCAGCACAAAGACCAC
CGAAACGTCAGCGGCGGGTTCTTCTAGCCCCAAGAAACCCTCCGCCGCCG
TCAACACCACCAGCAGCCCTCCTCCTTCCATTGGTCTTCCTACTTCCTCC
CCCTACCCCTCGTCTGCTGCCGTTTCGCCCTCCTGCCCTCGCCCTACCTC
GTCACCTGCCCGTTCTTCCACCTCCACTGCCGCATCGCCTTCCCTCTCTC
CCGCCCACTCCGGCATGGTAGCCTCTCCTTCCCCTCCCTCCGCTGTTTCC
TCCTCCTCTCCCTCCTCCTCCCCCTCCTCCTCCTCCTCCCTCCCCGACGA
GAAGACTCTTGTCCGTTGGTGTCAAAGGGTGGTGGCAAACGACATGGGGT
TGAAAAATGAAAGCCTCCTGGACGATGACTTCTACTTCATCGGGCCCTTC
GACGGTCCCATCGGGAAGACTGCCTTTCTGGAAGGTCGGTCCCTCCCTCC
TTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCCCCCTCCGCT
CCTCCCTCCTTCCTACGTCCCCCGTCTAG
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protein sequence of rna8713

>rna8713-protein ID=rna8713-protein|Name=rna8713|organism=Nannochloropsis gaditana|type=polypeptide|length=105bp
MRSLKGGRGSREGGEMLRNGNERKSIASRYIKPLFRHLQRAQRMSNRLNR
SMGKEANVPDGNTRAHNEEVHVRRERGGGRRELRRVITLGYTESSASLPI
PSSST
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mRNA from alignment at KK037249.1:642090..642610+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8713 ID=rna8713|Name=rna8713|organism=Nannochloropsis gaditana|type=mRNA|length=521bp|location=Sequence derived from alignment at KK037249.1:642090..642610+ (Nannochloropsis gaditana)
ATGCGAAGCCttaaaggaggaagaggaagcagggaggggggcgaaaTGTT
aaggaagtgaaggaggaaaaatagACGAAAAAAataaagaggaagaaagg
gagagacaggaagggggaggggatgaaacGAAGAAAAAGTTGTTAAAAAA
AGGCCAATCAGGGCACAAGCGCGAAGTAGGAGGGAGACGCGGTAGCTTTT
ATCATGCCGGGAATAAAAAATAGataggggggggagggagagagcccAAT
ATATGGCAGTGGGAACGAGAGGAAATCGATCGCAAGCCGTTACATAAAGC
CTCTCTTTCGTCATCTTCAACGCGCACAACGGATGTCAAATCGGCTTAAC
AGGAGtatgggaaaggaagcaaatGTTCCTGATGGCAATACACGTGCGCA
CAACGAGGAAGTACATgtgaggagagagaggggggggggaaggagggaac
tcCGTCGTGTCATCACTCTGGGCTATACAGAGAGCAGCGCATCACTTCca
atcccttcttcttccacttgA
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Coding sequence (CDS) from alignment at KK037249.1:642090..642610+

>rna8713 ID=rna8713|Name=rna8713|organism=Nannochloropsis gaditana|type=CDS|length=636bp|location=Sequence derived from alignment at KK037249.1:642090..642610+ (Nannochloropsis gaditana)
ATGCGAAGCCttaaaggaggaagaggaagcagggaggggggcgaaaTGTT
aaggaaTGGGAACGAGAGGAAATCGATCGCAAGCCGTTACATAAAGCCTC
TCTTTCGTCATCTTCAACGCGCACAACGGATGTCAAATCGGCTTAACAGG
AGtatgggaaaggaagcaaatGTTCCTGATGGCAATACACGTGCGCACAA
CGAGGAAGTACATgtgaggagagagaggggggggggaaggagggaactcC
GTCGTGTCATCACTCTGGGCTATACAGAGAGCAGCGCATCACTTCcaatc
ccttcttcttccacttgAATGCGAAGCCttaaaggaggaagaggaagcag
ggaggggggcgaaaTGTTaaggaaTGGGAACGAGAGGAAATCGATCGCAA
GCCGTTACATAAAGCCTCTCTTTCGTCATCTTCAACGCGCACAACGGATG
TCAAATCGGCTTAACAGGAGtatgggaaaggaagcaaatGTTCCTGATGG
CAATACACGTGCGCACAACGAGGAAGTACATgtgaggagagagagggggg
ggggaaggagggaactcCGTCGTGTCATCACTCTGGGCTATACAGAGAGC
AGCGCATCACTTCcaatcccttcttcttccacttgA
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Synonyms
Publications