rna8695, rna8695 (mRNA) Nannochloropsis gaditana

Overview
Namerna8695
Unique Namerna8695
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length575
Alignment locationKK037249.1:610370..611897 +

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Properties
Property NameValue
ProductV-type H -transporting ATPase subunit I
Orig transcript idgnl|cribi|Naga_100353g1.3234.mrna
Orig protein idgnl|cribi|Naga_100353g1.3234
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:610370..611897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100353g1gene8428Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8695rna8695-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22007.1cds8666Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8695 ID=rna8695|Name=rna8695|organism=Nannochloropsis gaditana|type=mRNA|length=575bp
GCTCACTAGAACCATCTGCTGCTGTTGCCGTAGCGTAGGCAAGTGCTCAG
CAGGGGTGGAAGAGCGGCGGCAGTCTCTTGTTTGGGTTTCAGGTTCCAGT
CCGCGAGAAGAAAACGGTTGTGGAGATTCTTGCCCCGGCGCTCGGGACTC
CACCCTTGTTATCCTTGTGGCTTTCAGTGCAAACGGGATAAATCATGGCC
AAATGGTTTCGTTCGGAGGAAATGGAGTACGTCTCCTTGATTGTCAACGA
GGACGCTGCGCACGGAGCGGTCAATGACTTGGGTATGCTGGGAATAATTC
AATTTACTGATCTGAACCACGAGCAAACAGCCTTCCAGCGTCGATACATC
TCGTACATTAAACGTTGTGACGAATTGGAGCGCAAACTACGCTATATGCG
CACCGAAATCGCAAAATTTGGCCTTGATACCGAGGTAAACAGGGAGCGGA
GAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGAGGGGTGCAGC
GACAAAGCAACGATGTGCGAAGTTGAAGATATTAAGAGAGCATTTCTACC
GGCACATAGCTGGCACTGCGCCTGA
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protein sequence of rna8695

>rna8695-protein ID=rna8695-protein|Name=rna8695|organism=Nannochloropsis gaditana|type=polypeptide|length=198bp
MKRKQAGLAGGHQGAVTHQALGEEGEEEGAHGHGHGHGGHEDHGGVGEIV
IHQMIETIEFVLGMVSNTASYLRLWALSLAHSQLAEVFFEKTLKGQMESG
SVIGVFIGFAIFGGREKLGAKDSMGSQFLYSSCLCPPSIPFSPSAVTFGV
ILSMDVVECFLHALRLHWVEFQNKFYKADGYKFAPLSIPALCKKVVLT
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mRNA from alignment at KK037249.1:610370..611897+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8695 ID=rna8695|Name=rna8695|organism=Nannochloropsis gaditana|type=mRNA|length=1528bp|location=Sequence derived from alignment at KK037249.1:610370..611897+ (Nannochloropsis gaditana)
cttccttcccttcccggggtccagatgaagaggaagcaggcgggTCTGGC
CGGGGGGCACCAGGGCGCGGTGACGCACCaggcgctgggggaggaagggg
aggaggaaggggcgcaCGGTCACGGACACGGGCACGGCGGCCATGAAGAC
CATGGTGGGCgaccttcttccctctctccctccctcccttcctccctccc
ttcctttctccctccctctctacctcccacccttgtCTGACGCCTGTGGC
TAACcacttcccccttctcctctctttctccctccctcccttgtcagGCG
GCGTTGGCGAGATCGTGATCCACCAAATGATCGAGACGATCGAGTTCGTT
CTGGGCATGGTCTCCAACACCGCGTCGTACCTCCGGCTGTGGGCGCTTTC
CCTCGCGCACTCTCagctggcggaggtggggagggagggagaaagggagg
gaggggatgaagggcAAGCATGGCGCCAGATGGGGGTCCCGGGGATGTGT
CCTAGTCTCATCTTcacgctttccctttcttcccctctacTCAGGTGTTC
TTTGAGAAAACCTTGAAGGGTCAGATGGAATCTGGATCGGTCATCGGCGT
CTTCATTGGCTTTGCAATTTTTGGCGGTAGGGAGAAATTGGGAGCAAAGG
ACTCTATGGGTTCTCAATTTCTTTACTCATCGTGCCTCTGTCCACCCTCG
attcccttctcgccctcagCCGTGACCTTCGgcgtcatcctctccatgga
cgtggtcgaATGTTTCCTGCACGCGCTTCGCCTCCACTGGGTCGAGTTCC
AGAACAAATTCTACAAGGtacagggaaagaaagggaaagcctgcactgaa
gaggatggagcaCTCGGTCCGACGGTTGCTTGCCTCTCACTAGCTCCTCA
CTAGACCTTCCATTCTTttgtcaccctccctccttccacaggcGGATGGC
TACAAattcgcccctctctccattccAGCACTCTGCAAAAAAGTGGTGCT
CACGTAGGTAAGACCGAGGGAGAAGCGTGGGatagagaaaggaaaagcag
gaaaaaggggCGCGCCAAAGACATGGCACCACCGGCTTCCAGGCACCGTT
TGTTCTGGGTCTCCTCTCTTGGCTCCGTGCCTTCCTTTTGACATTCTGGT
CAGCTGTCTGAGAGTCATTCCTTGCTTTGCAACACCCCCCAGAGCTATGT
AAAAGTCTTCCATTCGCGAGCGGAGCAGCCTGCTTCTCAGTCCggatgga
aggaaatgggGTTGAGAGTGATTCGTGCGTGGTTAGGGTATAGAGATATT
CAAGGGAGACAGTTTGTGAGGGTCCATCGATGTGTGTTCACGGCGCGCTC
CTAAGCTCTCCTCGGAATAGCCTCTTTCggggtggagaggacggagcTAG
AAATCGGACATGACGGTGGATTCTTCCGCGTCGACGGATAAGGGAAAGAA
GACCAGACCATCCTCGTTTGGAAGAAGTCAGAAAAGAATATCTGGGACCG
ACAAGAGCACCGCCAGCGGCACATAATA
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Coding sequence (CDS) from alignment at KK037249.1:610370..611897+

>rna8695 ID=rna8695|Name=rna8695|organism=Nannochloropsis gaditana|type=CDS|length=2388bp|location=Sequence derived from alignment at KK037249.1:610370..611897+ (Nannochloropsis gaditana)
atgaagaggaagcaggcgggTCTGGCCGGGGGGCACCAGGGCGCGGTGAC
GCACCaggcgctgggggaggaaggggaggaggaaggggcgcaCGGTCACG
GACACGGGCACGGCGGCCATGAAGACCATGGCGGCGTTGGCGAGATCGTG
ATCCACCAAATGATCGAGACGATCGAGTTCGTTCTGGGCATGGTCTCCAA
CACCGCGTCGTACCTCCGGCTGTGGGCGCTTTCCCTCGCGCACTCTCagc
tggcggagGTGTTCTTTGAGAAAACCTTGAAGGGTCAGATGGAATCTGGA
TCGGTCATCGGCGTCTTCATTGGCTTTGCAATTTTTGGCGGTAGGGAGAA
ATTGGGAGCAAAGGACTCTATGGGTTCTCAATTTCTTTACTCATCGTGCC
TCTGTCCACCCTCGattcccttctcgccctcagCCGTGACCTTCGgcgtc
atcctctccatggacgtggtcgaATGTTTCCTGCACGCGCTTCGCCTCCA
CTGGGTCGAGTTCCAGAACAAATTCTACAAGgcGGATGGCTACAAattcg
cccctctctccattccAGCACTCTGCAAAAAAGTGGTGCTCACGTAGatg
aagaggaagcaggcgggTCTGGCCGGGGGGCACCAGGGCGCGGTGACGCA
CCaggcgctgggggaggaaggggaggaggaaggggcgcaCGGTCACGGAC
ACGGGCACGGCGGCCATGAAGACCATGGCGGCGTTGGCGAGATCGTGATC
CACCAAATGATCGAGACGATCGAGTTCGTTCTGGGCATGGTCTCCAACAC
CGCGTCGTACCTCCGGCTGTGGGCGCTTTCCCTCGCGCACTCTCagctgg
cggagGTGTTCTTTGAGAAAACCTTGAAGGGTCAGATGGAATCTGGATCG
GTCATCGGCGTCTTCATTGGCTTTGCAATTTTTGGCGGTAGGGAGAAATT
GGGAGCAAAGGACTCTATGGGTTCTCAATTTCTTTACTCATCGTGCCTCT
GTCCACCCTCGattcccttctcgccctcagCCGTGACCTTCGgcgtcatc
ctctccatggacgtggtcgaATGTTTCCTGCACGCGCTTCGCCTCCACTG
GGTCGAGTTCCAGAACAAATTCTACAAGgcGGATGGCTACAAattcgccc
ctctctccattccAGCACTCTGCAAAAAAGTGGTGCTCACGTAGatgaag
aggaagcaggcgggTCTGGCCGGGGGGCACCAGGGCGCGGTGACGCACCa
ggcgctgggggaggaaggggaggaggaaggggcgcaCGGTCACGGACACG
GGCACGGCGGCCATGAAGACCATGGCGGCGTTGGCGAGATCGTGATCCAC
CAAATGATCGAGACGATCGAGTTCGTTCTGGGCATGGTCTCCAACACCGC
GTCGTACCTCCGGCTGTGGGCGCTTTCCCTCGCGCACTCTCagctggcgg
agGTGTTCTTTGAGAAAACCTTGAAGGGTCAGATGGAATCTGGATCGGTC
ATCGGCGTCTTCATTGGCTTTGCAATTTTTGGCGGTAGGGAGAAATTGGG
AGCAAAGGACTCTATGGGTTCTCAATTTCTTTACTCATCGTGCCTCTGTC
CACCCTCGattcccttctcgccctcagCCGTGACCTTCGgcgtcatcctc
tccatggacgtggtcgaATGTTTCCTGCACGCGCTTCGCCTCCACTGGGT
CGAGTTCCAGAACAAATTCTACAAGgcGGATGGCTACAAattcgcccctc
tctccattccAGCACTCTGCAAAAAAGTGGTGCTCACGTAGatgaagagg
aagcaggcgggTCTGGCCGGGGGGCACCAGGGCGCGGTGACGCACCaggc
gctgggggaggaaggggaggaggaaggggcgcaCGGTCACGGACACGGGC
ACGGCGGCCATGAAGACCATGGCGGCGTTGGCGAGATCGTGATCCACCAA
ATGATCGAGACGATCGAGTTCGTTCTGGGCATGGTCTCCAACACCGCGTC
GTACCTCCGGCTGTGGGCGCTTTCCCTCGCGCACTCTCagctggcggagG
TGTTCTTTGAGAAAACCTTGAAGGGTCAGATGGAATCTGGATCGGTCATC
GGCGTCTTCATTGGCTTTGCAATTTTTGGCGGTAGGGAGAAATTGGGAGC
AAAGGACTCTATGGGTTCTCAATTTCTTTACTCATCGTGCCTCTGTCCAC
CCTCGattcccttctcgccctcagCCGTGACCTTCGgcgtcatcctctcc
atggacgtggtcgaATGTTTCCTGCACGCGCTTCGCCTCCACTGGGTCGA
GTTCCAGAACAAATTCTACAAGgcGGATGGCTACAAattcgcccctctct
ccattccAGCACTCTGCAAAAAAGTGGTGCTCACGTAG
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Synonyms
Publications