rna8691, rna8691 (mRNA) Nannochloropsis gaditana

Overview
Namerna8691
Unique Namerna8691
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1421
Alignment locationKK037249.1:598704..599502 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101204g2.4497.mrna
Orig protein idgnl|cribi|Naga_101204g2.4497
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:598704..599502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101204g2gene8424Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8691rna8691-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22012.1cds8662Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8691 ID=rna8691|Name=rna8691|organism=Nannochloropsis gaditana|type=mRNA|length=1421bp
GCCAACCTGGCAGCTTTGGGCCTTGCCCCCCTCCCCCGTCCCTGCCTTTG
CGGCTTGCGCGACTTCTTTTTTTCATCATTATCGGATATGAGAGGCGTTT
TAAGTCTAATTTTGATAGAAGAATACCGCGTTAGGCCCTGGTACTTTTTT
GAGATCCTCTATTAACATGCCATGTCCTTTCCGTCCCCCATTTTCTCCTC
CTTCGAGCAGGGATTGTTTGCTTCCTCCTTCGTCGCCCTCTTCCGAGCCG
TCCAAATCTGAGGTCGCTTGGCACAAGCCTTTTGCGTCATGGCCAATTTC
AGTGGTGATGCTCGTCGCTATCCCGCGTCCTTCCCTTCCCAAGGACCTCC
CGTCTCCCTCTCCTCCGATGGACCTGCCCCCACCTCCTCCGGAGCCCCAC
CCCCTCCATTTCGGCATCACACCGTCCACCGGACAGGAACGAACGAGTAC
GCACAGGCCATGGAAGACCGCGCAGCCATGGCAGAGCAAATGATCGAGGC
GAGTAAGGAAGGGCACGTTTCGATGGCGGACGGCCTATTGCGTCAAGATC
CGTCCTTGGCGCTCTGCCGCGACAGCGTCGGGCAATCTCCTCTCATGTGG
GCAGCCTACAAAGGCCACGCCGAGCTGGCTTCCCTCTTGATCAAGGCAGG
CGCGCCCCTGGACGACCACGACTGTCAATCCTCCCGCTCCGCCCTCTACA
TGGCATGTGAATTTGGGAACTGGGCAGTCGCCGCCCTCCTCCTCCAGCAC
GGGGCCGACCCCTCCTTCCGCCGGCAGCTCTACGGCCGGACCTGTCTGCA
GATCGCAGCCTACAACAACCACGCCCACGTCGTCCAGGGTGTCCTCCACT
TCGCCGCCTTCTCCTCCCGGGGCCCCGGCCCCTGCCGAGTGGACATCAAC
GCGGTGGACAACCACGGGTCGACGGCCCTCCACCTCGCCATCCGAGATGA
CCATCTCCACCCGCCCTTCCAAGCCACTTCCGCCGTCCTCGACATCAGTG
AGACGGTGCGCATTCTCCTCCAATGGGGCGCGGACCCCCTCCTGCCCGAC
CACACCGGCGGCCTCCCCCTGGCTGCTGCCCACCGCCTCGGGCACAAGAG
ATGCATCGCCCTGCTCGCCAACTGGGAGCGGGCTGCCCTCGTCCACAAGG
CACGCTGGTGCCTGCGGGAAGCCCGGCTTCTAGAAGTCGAAGCTCGGGCC
GAGTCGGCGATGCTCGGTCCCAAGGAAGACGGGCGCCGGCGCCGGCTCTG
GAGGGAGGCGCAGCAGGAAAGGTTGGCGACCAGCGCAGTCACCCTCTTCG
TCCAACGTCGGCTCTATCAACCTTGCTTGTGGGCGATGCCCTCCATGCCG
GTGCCGTCGCCGAGTGCCTGGGGGGCCCCTGCGAACGGGGCCTGGGCGCA
GGGAGGGAGGGAGGGAGGGAG
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protein sequence of rna8691

>rna8691-protein ID=rna8691-protein|Name=rna8691|organism=Nannochloropsis gaditana|type=polypeptide|length=164bp
MLQQRLQVSTNILRVRWNALLQLMNDVPVKDDTLFVHHARRAMRGPHPVG
FKSQEGRGLDSAAGSRGRGRAHFYRRQTTPAYARRKSWHPNAFWRHLRPP
VSYPFSTSTPRSHSSPHAWPRPSPLAPAEIARLEAIGAQGGDSEGWKAWK
ELGMRYWSCAYGSR
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mRNA from alignment at KK037249.1:598704..599502+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8691 ID=rna8691|Name=rna8691|organism=Nannochloropsis gaditana|type=mRNA|length=799bp|location=Sequence derived from alignment at KK037249.1:598704..599502+ (Nannochloropsis gaditana)
CAGATAAAGACGCTCGGAAAGGTTTGTAGGATGGATTTTGTCGAAAGTGT
TTGCAAGGATTGTTGGTGGGTTAAAGCACACCTTGTCAGCAAAAGgtcag
gaagaaggagagggactcGAGCATGGGGGGACAGAACAAACAAAAGCAAC
TTTCACCATCTCGCTGAAGCATGAGGTACGACGTCGATTCGTGTCGCATG
ACCCACCGTTGACGCAATCCTAATTAATACCTACACGCGTGATGCAGTTG
CAACTGACAGTCAGGACCATATACCTTAGCCCTCCGCGAGCTTAAATCTT
GTCGATGCTGCAACAGCGTTTGCAAGTAAGTACGAATATACTTCGAGTAC
GGTGgaatgccctcctccagctgaTGAACGACGTTCCCGTGAAAGACGAC
ACGTTGTTCGTGCACCACGCCAGGCGCGCAATGCGCGGGCCGCACCCTGT
TGGCTTTAAAAgccaggagggacggggatTAGACTCAGCCGCCGGCAGTC
GTGGCCGAGGTCGTGCTCATTTTTATCGCAGACAAACAACCCCGGCATAT
GCCCGACGCAAGTCATGGCACCCCAATGCTTTCTGGAGACACCTCCGGCC
CCCTGTCTCCTatcccttctccacctccactcCGCGCTCCCATTCCTCAC
CTCATGCATggcctcgcccctcccccctcgcccccgccgagATCGCGCGT
CTGGAGGCCATCGGCGCGCAAGGAGGGGACtcagagggatggaaagcctG
GAAAGAGCTGGGAATGCGGTATTGGAGCTGTGCGTATGGATCCAGATGA
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Coding sequence (CDS) from alignment at KK037249.1:598704..599502+

>rna8691 ID=rna8691|Name=rna8691|organism=Nannochloropsis gaditana|type=CDS|length=495bp|location=Sequence derived from alignment at KK037249.1:598704..599502+ (Nannochloropsis gaditana)
ATGCTGCAACAGCGTTTGCAAGTAAGTACGAATATACTTCGAGTACGGTG
gaatgccctcctccagctgaTGAACGACGTTCCCGTGAAAGACGACACGT
TGTTCGTGCACCACGCCAGGCGCGCAATGCGCGGGCCGCACCCTGTTGGC
TTTAAAAgccaggagggacggggatTAGACTCAGCCGCCGGCAGTCGTGG
CCGAGGTCGTGCTCATTTTTATCGCAGACAAACAACCCCGGCATATGCCC
GACGCAAGTCATGGCACCCCAATGCTTTCTGGAGACACCTCCGGCCCCCT
GTCTCCTatcccttctccacctccactcCGCGCTCCCATTCCTCACCTCA
TGCATggcctcgcccctcccccctcgcccccgccgagATCGCGCGTCTGG
AGGCCATCGGCGCGCAAGGAGGGGACtcagagggatggaaagcctGGAAA
GAGCTGGGAATGCGGTATTGGAGCTGTGCGTATGGATCCAGATGA
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Synonyms
Publications