rna8667, rna8667 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8667
Unique Name	rna8667
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1289
Alignment location	KK037249.1:544714..547936 -

Link to JBrowse

Properties


Property Name	Value
Product	Nop14-like protein
Orig transcript id	gnl\|cribi\|Naga_100052g32.1184.mrna
Orig protein id	gnl\|cribi\|Naga_100052g32.1184
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:544714..547936 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100052g32	gene8400	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22059.1	cds8640	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8667	rna8667-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:544714..547936-
coding sequence from alignment at KK037249.1:544714..547936-

mRNA sequence

>rna8667 ID=rna8667|Name=rna8667|organism=Nannochloropsis gaditana|type=mRNA|length=1289bp
TATACAAGTCATCAGCTGCGACCACCACTCATTCATATCAAAAAAGCAGC
CGCCCTGTCGGTGTCGGAGGGCACCGCTGGAGTGGTCGAGGGGTCGGTGC
CAGCCTAGGGCGAGGTATCGCCTCTGGAGTATCCGGACACGAAAGACTCG
AATAACGAAACCACCATAACAATCTTTGGTTGGTGATGAGTGTGATCGGT
GCTTATAGTCCTGCCCTGTCTTCTTATTGAATGTTTTCGACTCACGAGTG
CTTTAGCTGCAAAACTAACTCTGACATGTCAAAGAAGAGGGGAGGTAAAC
TACGATGACAAGAGGGCGTTCTTTGCAAGGCGACATAGCTATCCCGCTAT
TACCATGTTTTTAAATGACGTGTTTTATACGGTATATACTCCTACAGGTT
GCTGGCCTGAGAAGCCAGGGGATGAAATTGCGGCATCTTGAATCGTTCCT
GTCGCAGGTGGACGGTTTTGAGGCGCCCAAATGGGGCCTTGAGCAATACT
TGACCCCGCCGCATTTGGCTGCGAGAGTATTGCACTGCGTAGCATCTTAC
GACGACTTGGAAGGATGTGCAGTTGCTGACCTGGGCTGTGGAACTGGTAT
GTTGCTTGCGGGGGCTGCACTTATGGATTGTGACGAAACTTTGAGCGTAG
GCGTGGACGCTGACCCGGACGCCTTGAGCACCGCGCGAGGCAATCTAGAC
AAATTGGAGCTCAATTTTTCATTGCTTCAAGCGGACATTGTGGTAAATAA
TGGTTTACCTTTTCGCCGTGTCATCAGCGAAGGCAGCAATTTTGATACGG
TGATCATGAATCCACCCTTCGGAACAAAAAATCAAGGGGTAGACATGTTG
TTTGTAAGGCGTGCTCTGGCCTTTGCACCCATAGTGTACTCTTTGCATAA
AACCTCTACTCGGGACTTTTTGATGGGCTGTGGTGCAGCAGGTTGTGGAA
AGCATGTGCAGGCAGAGGTCATCGCAAACATGCAGTTCGAAATCCCGGCC
ACCTACTCGTTCCACAAGCAGAAGTCTGTAAACATAGATGTCGACCTCTT
TAGGTTCTCGCGCCGGAATAGTGAAGACATGGAAGAGGCGATTACTGGAT
GAAGATGAGAAGTATCGAGCGATGCGGAGAAAGGATGCAGTGGAGTCGTT
TACTAGAAGACCTGCGGCATATAAGACATTCATCCGCTTTATCTTTTGAG
AACTGGGAAGATTGTGCATAACGAAAGATCGTCCCCCTGTAATAAGTGTC
GTGCAAAAGAAAGTACCACGTCCTGGTTGTGCAACTCAG

protein sequence of rna8667

>rna8667-protein ID=rna8667-protein|Name=rna8667|organism=Nannochloropsis gaditana|type=polypeptide|length=1001bp
MGATKKKYSESTLGRQSGADRGDRKMRKWAGGGKFRGLGPLGPGSRSTTR
SPTASGNPFDAVGNRRAKFTVLNKRAKGQVRNVGKARQMAVERRKKTLLV
EYRASKKDNVFKDRRFGEDDPTLSLEEKMLLRFQKERQKRARRSGAGRFN
LEQEEENEDDNYGGLTLTHKGKALTAEDDYLDKDGVASSDDEDKKRGLNK
EIVKELHFGGTRIGDRKRPLPGDEEGHYGPSAAKKSRAELIEEIIAKSKM
HKAAKAKLKDAQELVLSQLDESFKDLVGDLEFRDKFKSKREEQAKTSRGG
DLATSGLLLADNQDYDELVTAIRGESFAAKARDRTKTPEEEAREEREKLE
RLEAARRARMRGEVDAEVDSEVEIGGSSGEDAEARSGEGGESEEEEKEEG
EEDLKGLGTGWDTDSWSDEEATSARLSCEDESHEEKSDSSEGEERAGSGS
ALKDVKARRREAGHGKRLGETERQNGKESGAPPVGNVRPVHKNARLRGVV
AKAVAEVAEEGKGVNPRMPYVLECPSSLEDFSLLVREHARGPQDVAELIT
RIRRYHAIRSGGDRARVHAFYDVLMRRLACLGDALTAAGEVEVNAIAEAL
TMMAEEMPSAAAGLWGRMLTGLQARLGKGLRDHELGERARSPWPSPGALL
LLRLLPRVFCATDFRHPVVTPALLYMGQALTQCPLLRPRDVERGLFVAAL
ALQYTEESGRLMPEFFAFLQSLLAALAGESSALCLPTLGPSLAEMLHKQT
VAALQEDAETPPGPAVLGGWGRRRGNEEQDLDGTEAGPEEQEVGPSLLAV
QCLSMTCHLVKRVCEGPLSRSPAAVELFQPLVECLAAVEAAVPKDKEAPA
KCLLASVVRETAQRLEGAVAAARGSRAPLIWRKKNVEAIPSLAPRIIDNF
IVRRDEGLEREAARIKQLTRQVKREKKGVMRELRRDAAFLDAEKVRLERE
RETVRRQVVKDNTAWLEASAADFNKQVKQAKGETLRGGGSGLKQMLLGKR
K

mRNA from alignment at KK037249.1:544714..547936-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8667 ID=rna8667|Name=rna8667|organism=Nannochloropsis gaditana|type=mRNA|length=3223bp|location=Sequence derived from alignment at KK037249.1:544714..547936- (Nannochloropsis gaditana)
TCGCCTTCAAAAACCAATCTATCGACTTCGGGCCACGACTAGTGTTGATG
TTTTATAAATGGGAGTCTCCATGCTTCAAAAGCGTGCTTCAACGGTATCT
CTGGTGAGCAAAGTATCGACTGCTTGTGCTTACCTTCCACTGCATCATGA
CTTTCAAACCCCTCCCAGGTTATATAGAAAGAAATGGGAGCGACTAAAAA
GAAGTACTCAGAGTCAACATTGGGTAGACAATCAGGGGCCGACCGTGGGG
ACCGCAAGATGAGAAAATGGGCTGGAGGAGGCAAGTTCAGAGGATTAGGG
CCTCTCGGCCCGGGAAGTAGGTCCACCACTAGGTCCCCTACTGCTAGTGG
AAACCCGTTTGATGCTGTGGGAAACCGCAGAGCAAAGTTCACAGTCTTAA
ACAAACGCGCAAAAGGTCAAGTACGAAATGTCGGCAAAGCGCGGCAAATG
GCTGTGGAGCGTCGAAAAAAGACTCTCCTTGTGGAGTACCGTGCCTCGAA
GAAGGACAATGTCTTCAAGGACCGCCGCTTTGGAGAGGATGACCCGACTT
TGTCTTTGGAAGAGAAGATGCTTCTACGATTCCAGAAAGAGCGTCAAAAA
CGAGCCCGACGGTCGGGAGCTGGACGTTTTAATCTCGAGCAAGAGGAGGA
AAATGAGGATGACAACTATGGGGGCCTGACGCTAACGCACAAGGGAAAGG
CATTGACCGCAGAGGACGACTATCTAGATAAAGACGGAGTGGCATCGAGT
GACGATGAGGACAAAAAGCGCGGACTGAACAAAGAAATTGTGAAGGAGCT
GCACTTCGGTGGGACGAGAATTGGAGACCGCAAGCGGCCCCTGCCGGGAG
ACGAAGAAGGTCACTACGGCCCCTCCGCGGCGAAAAAGTCTCGGGCGGAG
CTCATCGAGGAGATCATAGCCAAATCCAAGATGCACAAGGCGGCAAAAGC
GAAGTTGAAGGACGCCCAAGAGTTGGTGCTGTCTCAGCTGGACGAGAGCT
TCAAGGACCTGGTGGGTGACCTGGAGTTCAGGGACAAGTTCAAGAGCAAG
AGGGAGGAGCAGGCGAAGACGTCGCGCGGAGGAGATTTGGCCACCTCCGG
GCTCCTCCTTGCAGACAACCAAGACTACGACGAGCTGGTAACAGCCATAC
GGGGCGAGAGCTTCGCAGCCAAGGCAAGGGACCGCACGAAGACGCCGGAA
GAGGAGGCCCGGGAGGAAAGGGAGAAGCTGGAGAGGCTGGAGGCCGCGCG
CCGGGCGCGCATGCGGGGGGAAGTGGACGCAGAGGTGGACAGCGAAGTAG
AAATCGGAGGGAGCAGTGGTGAGGACGCAGAGGCTCGGTCGGGGGAGGGC
GGTGAGAGCGAGGAGGAGGAAAAGGAGGAGGGGGAGGAGGACCTCAAGGG
GTTGGGAACCGGCTGGGACACCGACAGCTGGAGCGACGAAGAAGCTACGT
CTGCCCGGTTATCTTGTGAGGACGAGTCACACGAGGAGAAGAGCGATAGT
AGTGAGGGGGAAGAGCGTGCGGGGAGCGGCTCGGCGTTGAAAGACGTCAA
GGCACGGCGAAGGGAGGCGGGACATGGAAAAAGGTTGGGAGAGACCGAGA
GGCAGAATGGCAAAGAGAGCGGGGCGCCTCCAGTTGGAAACGTCCGACCT
GTGCACAAAAACGCACGCTTGAGGGGGGTCGTGGCCAAGGCGGTGGCGGA
GGTAGCAGAGGAAGGCAAGGGGGTGAACCCGCGCATGCCGTACGTGCTGG
AGTGCCCTTCGAGCCTGGAGGATTTTTCGCTCCTCGTGAGGGAGCACGCG
CGCGGGCCCCAAGACGTGGCCGAGTTGATCACCCGAATCCGTCGATACCA
CGCGATCCGATCGGGCGGGGACCGGGCGCGGGTGCACGCCTTCTACGATG
TGCTAATGCGGCGCTTGGCCTGCCTGGGAGACGCTCTGACGGCCGCCGGG
GAGGTGGAGGTAAACGCCATCGCGGAGGCGCTGACTATGATGGCCGAGGA
GATGCCAAGCGCCGCCGCCGGGCTCTGGGGCCGCATGCTTACGGGGTTGC
AGGCGAGGCTGGGGAAGGGCCTGCGCGACCACGAGCTGGGCGAGAGGGCA
CGTAGCCCCTGGCCCTCCCCCGGGGCCCTCCTGCTCCTACGCCTCCTGCC
TCGCGTCTTCTGCGCCACCGACTTCCGGCACCCGGTGGTCACACCAGCCT
TGCTCTACATGGGCCAGGCCCTGACGCAGTGTCCCCTGCTCAGGCCGCGC
GACGTGGAGCGGGGGCTGTTCGTGGCGGCTCTGGCGCTGCAGTACACGGA
GGAGTCGGGGCGTCTGATGCCGGAGTTCTTCGCCTTCCTCCAGTCCCTCC
TGGCGGCCCTTGCCGGCGAGAGCTCAGCGCTTTGTCTACCGACCCTGGGC
CCCTCCCTTGCGGAGATGCTCCACAAACAGACGGTGGCCGCACTGCAAGA
AGACGCCGAGACCCCCCCAGGACCTGCTGTGCTGGGTGGTTGGGGGCGGC
GGAGGGGGAATGAGGAGCAGGACCTAGACGGAACCGAGGCTGGCCCAGAA
GAGCAGGAGGTGGGCCCCTCGCTATTAGCGGTTCAGTGCCTCTCCATGAC
TTGCCACCTGGTTAAGCGTGTCTGTGAGGGCCCCCTGAGCAGGAGTCCTG
CCGCAGTCGAGCTCTTCCAGCCTTTGGTGGAATGTCTCGCGGCTGTGGAA
GCCGCTGTGCCGAAGGATAAGGAGGCCCCCGCCAAGTGTCTGCTAGCATC
TGTGGTGCGAGAGACTGCGCAGCGATTGGAAGGAGCGGTGGCGGCAGCCC
GGGGGTCGAGGGCCCCCCTGATCTGGCGAAAGAAAAACGTGGAGGCCATC
CCCTCGCTAGCCCCGCGCATAATAGACAACTTCATAGTGCGGAGGGACGA
GGGCCTGGAGCGGGAGGCGGCGCGTATCAAGCAGCTCACTCGGCAGGTGA
AGCGTGAGAAGAAAGGTGTGATGCGGGAACTGAGGAGAGACGCGGCATTC
CTGGACGCAGAGAAAGTGCGCCTGGAGAGAGAGAGAGAGACGGTGCGGAG
ACAGGTAGTCAAGGACAACACGGCGTGGCTGGAGGCGTCAGCAGCGGACT
TCAATAAACAGGTCAAACAGGCCAAGGGAGAGACTCTGCGGGGGGGGGGT
TCTGGACTGAAGCAGATGTTGCTTGGAAAAAGAAAGTAAATCAAAGATAA
ATGTCTTACTGAGTTGCACAACC

Coding sequence (CDS) from alignment at KK037249.1:544714..547936-

>rna8667 ID=rna8667|Name=rna8667|organism=Nannochloropsis gaditana|type=CDS|length=3006bp|location=Sequence derived from alignment at KK037249.1:544714..547936- (Nannochloropsis gaditana)
ATGGGAGCGACTAAAAAGAAGTACTCAGAGTCAACATTGGGTAGACAATC
AGGGGCCGACCGTGGGGACCGCAAGATGAGAAAATGGGCTGGAGGAGGCA
AGTTCAGAGGATTAGGGCCTCTCGGCCCGGGAAGTAGGTCCACCACTAGG
TCCCCTACTGCTAGTGGAAACCCGTTTGATGCTGTGGGAAACCGCAGAGC
AAAGTTCACAGTCTTAAACAAACGCGCAAAAGGTCAAGTACGAAATGTCG
GCAAAGCGCGGCAAATGGCTGTGGAGCGTCGAAAAAAGACTCTCCTTGTG
GAGTACCGTGCCTCGAAGAAGGACAATGTCTTCAAGGACCGCCGCTTTGG
AGAGGATGACCCGACTTTGTCTTTGGAAGAGAAGATGCTTCTACGATTCC
AGAAAGAGCGTCAAAAACGAGCCCGACGGTCGGGAGCTGGACGTTTTAAT
CTCGAGCAAGAGGAGGAAAATGAGGATGACAACTATGGGGGCCTGACGCT
AACGCACAAGGGAAAGGCATTGACCGCAGAGGACGACTATCTAGATAAAG
ACGGAGTGGCATCGAGTGACGATGAGGACAAAAAGCGCGGACTGAACAAA
GAAATTGTGAAGGAGCTGCACTTCGGTGGGACGAGAATTGGAGACCGCAA
GCGGCCCCTGCCGGGAGACGAAGAAGGTCACTACGGCCCCTCCGCGGCGA
AAAAGTCTCGGGCGGAGCTCATCGAGGAGATCATAGCCAAATCCAAGATG
CACAAGGCGGCAAAAGCGAAGTTGAAGGACGCCCAAGAGTTGGTGCTGTC
TCAGCTGGACGAGAGCTTCAAGGACCTGGTGGGTGACCTGGAGTTCAGGG
ACAAGTTCAAGAGCAAGAGGGAGGAGCAGGCGAAGACGTCGCGCGGAGGA
GATTTGGCCACCTCCGGGCTCCTCCTTGCAGACAACCAAGACTACGACGA
GCTGGTAACAGCCATACGGGGCGAGAGCTTCGCAGCCAAGGCAAGGGACC
GCACGAAGACGCCGGAAGAGGAGGCCCGGGAGGAAAGGGAGAAGCTGGAG
AGGCTGGAGGCCGCGCGCCGGGCGCGCATGCGGGGGGAAGTGGACGCAGA
GGTGGACAGCGAAGTAGAAATCGGAGGGAGCAGTGGTGAGGACGCAGAGG
CTCGGTCGGGGGAGGGCGGTGAGAGCGAGGAGGAGGAAAAGGAGGAGGGG
GAGGAGGACCTCAAGGGGTTGGGAACCGGCTGGGACACCGACAGCTGGAG
CGACGAAGAAGCTACGTCTGCCCGGTTATCTTGTGAGGACGAGTCACACG
AGGAGAAGAGCGATAGTAGTGAGGGGGAAGAGCGTGCGGGGAGCGGCTCG
GCGTTGAAAGACGTCAAGGCACGGCGAAGGGAGGCGGGACATGGAAAAAG
GTTGGGAGAGACCGAGAGGCAGAATGGCAAAGAGAGCGGGGCGCCTCCAG
TTGGAAACGTCCGACCTGTGCACAAAAACGCACGCTTGAGGGGGGTCGTG
GCCAAGGCGGTGGCGGAGGTAGCAGAGGAAGGCAAGGGGGTGAACCCGCG
CATGCCGTACGTGCTGGAGTGCCCTTCGAGCCTGGAGGATTTTTCGCTCC
TCGTGAGGGAGCACGCGCGCGGGCCCCAAGACGTGGCCGAGTTGATCACC
CGAATCCGTCGATACCACGCGATCCGATCGGGCGGGGACCGGGCGCGGGT
GCACGCCTTCTACGATGTGCTAATGCGGCGCTTGGCCTGCCTGGGAGACG
CTCTGACGGCCGCCGGGGAGGTGGAGGTAAACGCCATCGCGGAGGCGCTG
ACTATGATGGCCGAGGAGATGCCAAGCGCCGCCGCCGGGCTCTGGGGCCG
CATGCTTACGGGGTTGCAGGCGAGGCTGGGGAAGGGCCTGCGCGACCACG
AGCTGGGCGAGAGGGCACGTAGCCCCTGGCCCTCCCCCGGGGCCCTCCTG
CTCCTACGCCTCCTGCCTCGCGTCTTCTGCGCCACCGACTTCCGGCACCC
GGTGGTCACACCAGCCTTGCTCTACATGGGCCAGGCCCTGACGCAGTGTC
CCCTGCTCAGGCCGCGCGACGTGGAGCGGGGGCTGTTCGTGGCGGCTCTG
GCGCTGCAGTACACGGAGGAGTCGGGGCGTCTGATGCCGGAGTTCTTCGC
CTTCCTCCAGTCCCTCCTGGCGGCCCTTGCCGGCGAGAGCTCAGCGCTTT
GTCTACCGACCCTGGGCCCCTCCCTTGCGGAGATGCTCCACAAACAGACG
GTGGCCGCACTGCAAGAAGACGCCGAGACCCCCCCAGGACCTGCTGTGCT
GGGTGGTTGGGGGCGGCGGAGGGGGAATGAGGAGCAGGACCTAGACGGAA
CCGAGGCTGGCCCAGAAGAGCAGGAGGTGGGCCCCTCGCTATTAGCGGTT
CAGTGCCTCTCCATGACTTGCCACCTGGTTAAGCGTGTCTGTGAGGGCCC
CCTGAGCAGGAGTCCTGCCGCAGTCGAGCTCTTCCAGCCTTTGGTGGAAT
GTCTCGCGGCTGTGGAAGCCGCTGTGCCGAAGGATAAGGAGGCCCCCGCC
AAGTGTCTGCTAGCATCTGTGGTGCGAGAGACTGCGCAGCGATTGGAAGG
AGCGGTGGCGGCAGCCCGGGGGTCGAGGGCCCCCCTGATCTGGCGAAAGA
AAAACGTGGAGGCCATCCCCTCGCTAGCCCCGCGCATAATAGACAACTTC
ATAGTGCGGAGGGACGAGGGCCTGGAGCGGGAGGCGGCGCGTATCAAGCA
GCTCACTCGGCAGGTGAAGCGTGAGAAGAAAGGTGTGATGCGGGAACTGA
GGAGAGACGCGGCATTCCTGGACGCAGAGAAAGTGCGCCTGGAGAGAGAG
AGAGAGACGGTGCGGAGACAGGTAGTCAAGGACAACACGGCGTGGCTGGA
GGCGTCAGCAGCGGACTTCAATAAACAGGTCAAACAGGCCAAGGGAGAGA
CTCTGCGGGGGGGGGGTTCTGGACTGAAGCAGATGTTGCTTGGAAAAAGA
AAGTAA

Synonyms

Publications