rna8664, rna8664 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8664
Unique Name	rna8664
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1805
Alignment location	KK037249.1:534656..539808 +

Link to JBrowse

Properties


Property Name	Value
Product	vesicular transport proteins alpha beta hydrolase
Orig transcript id	gnl\|cribi\|Naga_100052g28.1175.mrna
Orig protein id	gnl\|cribi\|Naga_100052g28.1175
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:534656..539808 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100052g28	gene8397	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8664	rna8664-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22050.1	cds8637	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:534656..539808+
coding sequence from alignment at KK037249.1:534656..539808+

mRNA sequence

>rna8664 ID=rna8664|Name=rna8664|organism=Nannochloropsis gaditana|type=mRNA|length=1805bp
GACACTCATCTTCATATGGGCAGGAAGCTTATAACGTGCCTTTCCTACAC
GATACAACAGGCTCTAAGACTACCTCTGGTAGCGCTTTGAAAAGTGACCA
TTCCCAGTACTCAAGAAACGTTTTTGATGGGTGCAATCGATGGCGATTAT
AGAATAAGACACTCGCGGCGAGGCTGGGCTGTCGTCTGCCTTGCATGTAT
ATTATCCCAATTTGCAATTAGTTTAGCAAACACCGGAGAGGCAGCTCCCC
AATCAACACCAGCATCTGAAAATGTAGATACTACCATATACACATATGAT
GCAGCGCCACCATACTCGCGGGATAGCCGGAAAAACTCTGAGCATGGTGC
TCAAATAGATGTGAGGCCCGAGCACGATACTGGGGGTGAGATCAGCCTTA
TGCGCCAGGGAAACTACCAGAATTTGACATCTGACAATGAGAAAGGATCT
GATAAATTGGTCAATGAATTGTCAAGTGGGCTCGAGAAAGCCACTGGGGA
TGGCGTCTTGGGGTACGAGCAGCGAGATATCGAGGGGATCATAAGAAGCG
AGGACGAGGAGGAGGAGGAGAAAATTGGCAGCGTTATGTATAATGCTGCA
GAAGAGGACTCCATGGCAGAGATAAGGGGGTTAATTGAAGCCCAGGCTGA
GGAGGAACGGCGCCTAGCCGAGGAAGCGGCGTTCGACGAGGCACGAGCAC
ATGCAGCAGAGCGGGAGGCCGTGCGGCAAGAAGCAGAGGAGAAAGTACGG
ACTCGAAGACAAGCACGCGATGACAATCTCTTCGAGGCATTTAAGGAACA
ACAGTGGGCGGAGCCGATGGCGAGAAGCCGTAGCGGCAGCTCCGCGGCTG
ACCCGGGCATTGATGGCGGGAGCGGGCACCGTGATGGAGTGTCCGCCCTG
GCGGGACGCACCTCGCACAGGCCGCGCGGGCATGTGCTCGGGCTTGGCCA
AGGGACAAGTAATAGAGGCACGACGTCTCGATTCTCCTCCTTCCATGCGC
AGCGAGGCCGCGTGCCCCCCACCAGTGACGAAGCTCAAGCCGAGATGATG
AGCGCCGCGTTCGGTAGCGTGCGCGGCAAAGCGTCCTTCGAGGAGATGAA
TTCACAGCACCAAGGGGGTACAGTCGATCGTACTGGGGAAGAGAATGGCA
CCGCGCGCGCTCATCTGGCTGCCAAACTGGTTCTGGAGACAGACGCCCTC
CTCTACGGCGGCCATGGTGGTCCCGTTGGCGCTACCCTGTTGGAGGTAGA
GGGTGGCGATGAGGACTGGGAGAACGGAGAGGGAGCTGGAAGTGCAGGGA
TGAAGAATGTACTAGTAAAAGACCGTACAAGCAAAGAAATTCAGCGTATC
CTGCGGGAAGGGGAGAGAGAAGAACCGAATTGGTACGTGGTACTAGGCAT
CTCTCGACGCGCGCAGGCGCAGGCCGTGAAGGACAGCTTTCGGAGGTTGG
TTCTTCTTATTCATCCGGACAAAACTAGTCACCTTGGTGCGCAAGAAGCG
TTCCAGCTGGTGCAGGAGGCGTACGAGAGCCTCTCTAGTCCAATCGAGCG
GCTTGCGTACGATCAATACCTGGTCAAGCTACGGGCCAAACGCTGGAAGC
AGCGCCTCCGCCCGCTGGTCGACAAAGTCGATGAATTTTCCGACTACTAC
GAACCGATTTTAGAACGCAAAGGTCAGATCGCCGCCGCCGCCTTTCTACT
GTGGGCCTTGGTTCTGTGAGGATCGCCAAAGTAAAATTTGACAAATGGCA
TGAACGATAAAGATGCCCAGTGCCGCCCTTGTGTGGGCAAATAGTAGGAA
GTACA

protein sequence of rna8664

>rna8664-protein ID=rna8664-protein|Name=rna8664|organism=Nannochloropsis gaditana|type=polypeptide|length=553bp
MMKRLLKKQPSRDKETYERVPGAAAGGATKTERNQEYIRFADMQERLEDL
KEQWNDVITPRLETFEAIREEIGTLEIPPPLHYPPEPPYTVDCFDFTADS
DESEGGTSIQTPLPTQDAAGRLPLQQSDSESQPVRPQTRHLEYAPGTLPT
SFSFACGGWLQFYMFGVAKCLKDHALHTEARFSGCSAGALTALGLCVEPS
SFDKAVEYCKAVCIPRCRGTLLGPFLLHKYVRGCLDYSGCLEEHWQRANG
RLSVAVTGLPDFRAIRINDFRSKEELISALMASAAAFPLSPPVRRRNKWL
IDGGLSDFQPVLESRTVTVNPFYFSQADIRPSRYVPAWWSLLPPSHSGTV
DWLYDLGFCDTLRWMRSVNLESKCAARCRKDPSDPLSCRHRPTREKHPFD
QSNKSSFGRFFGYGRWPILFDLMTMLLVQTVWRTTAYVLIYTEISLKFVY
VGICALAMEAFAMRWALLTGGVLLAPSLAHMLAALAAIISIKLSLDGSAG
RRQWHVALELAASLLSVSLFLRSLPILGNRIHLRKHHKLYRQSLMYRIMV
HII

mRNA from alignment at KK037249.1:534656..539808+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8664 ID=rna8664|Name=rna8664|organism=Nannochloropsis gaditana|type=mRNA|length=5153bp|location=Sequence derived from alignment at KK037249.1:534656..539808+ (Nannochloropsis gaditana)
GCTGAGCAAACCAATCAATGGTGAGATTTCATTCATGAATGACGCTTCAT
CCCGATGGGATGACCGAAAAAAATATGCGGGCCTCCGATTTGTGATCGGA
AATCGCTTCTTTGAAGCTCGAAAATGCGCTTTGGCCTAGGGCTAGCTCAG
GTAAGGCCTTCCTTGCTTTCGCGCCGAAACTATTCagcccccctgtcctc
cacttTGCTCACCGCAATTTGCCATTTCAGGAAGAGCACCGCGTGGCCAA
CGTTGCTTTCTCTCAAGCGTGTACTTGCAACTAAGTGAATGCGTTTGGAT
GCGTGAGGCAATCGAAGCAAACATAGTTGAATCTTGTCTATGGATGCAGA
GGTAAGATAAGGCATAAGAATGAGAGAGTGACGTGCGTGCTTCTTGCTTT
CGCGCACCCTGACATGGCTCTATCCTGCTACAGCGCACGTGTACCGCTTT
ATTGTCTGGGCATGAAACAGGTTAAGTTCTAAACAGATAATGCATAGCTC
ACTCTTGCTTGGCTTATCATCTTTGGGTCGCAACGCAAGACTTGATTTTT
AAATTTAAGCGCCCGAGACGGTGGCGTTTCCTGAATCGTAGCAAGTTCGA
CTTTTTTCCCATTTAGGTGATTCGTTTGCCTATTATGCGCAAAATACACA
CACATGTAAATAAACTGATCATTTAAAGGGCAGAGATAGATTTTAGCGCT
AAGATATTTCGAGCTACGTCGGCTGTCCTGTAGCTGCCGGGAGCCGAGTC
GCATAATTTAGTCCCTCGCCTACTGACAatgctccttttttcctcgatCT
GTCGATGTGTTTTTCGTAGGCACTTTCCTCGCAAGGTTTTTGTAACATTG
CTTAATCGATAAGTATTCGGCCGGGCAGTTTTCGAGCGCGGTAGACGAAC
CCGTGCAAGTGTCCTAGGAGATGCCGTAGACATCGGGGAACTCTTGTCGT
GTCCGTGTCGTGTGTTAGTGGAAAAAATAACGGGTATGTCTTCGTCCAAG
CTTTTTCCtggcgagggaaaggcggtAGGCAGAGGTGACAATGCGAGTGA
GCCCTTAACAAGGCGAGATTCAAGCGCGGGGGGCTCTGGAAGTCGCGACC
ACACGCCCGTTGTCGCCCGTTACGCCATCCTGTCAGCTCGGACAGACTCT
CTTGGCGACATGGGTGGACGAGTTGAAGGCGCGCCCGAGATCACGATCCA
GCACGCGAGGGTAGTGGAGGGCCGGGGCGTCACGTCCTCGGTGCCTGCGA
GCGTTTCGGCGGTGCAGGAGAGTTTGACGAacggggaggcgaggaccTCG
ACGCCGGCACGTTTGTCACGCGTGCTGACACCGCATAAAGGCCAAAGCCG
GCCCCCCTCTCAGGGCCTTGCAGGGAGAAGTGCAGCCACTGCCTTGGGCG
ATCGTGATGCCCGAGGGGAACAGGAAGAGATCGCGGTCCTGCTTCAACGA
CGAATGGAGCGGCGTTCGCGTAGAAAGCTACGTAGGTGGGCTAATGACCG
TCTCTTCGACGTGAACGCCGTGCAGGGCCCACCTGGGgatgaaaaagagg
cggtggccgaGGGCGAGTACGGACCgctgtgggaggaaaggcttcCGTCC
AAGTTCTCGGCGCTGATGGCACAGGAGGATACTGAGGCTCGTGATCGGTA
TCTGGCAGGCTATGGGACACGAACGTGtgggtggggtggaggaaggaata
gGGGAAGACTCCGTCATATGAGTCGGGGACAAGCGTCGGCactgggggag
gcggagactcGCTTTCTTCGACTGGAGAAGCGGCTGCGAGGGATTTTGAC
GCAGCTGGTGGGCTCTAATGCGCACATGGCAAGCTTTTTAGAAGACATTG
AGGGTCTTCTCACTACTATGCTGTCAAGAAAATCCTTGTTGTGTGAGGGC
GGCGGAAGCgcgggtggaaaggaagagaatggcacttcggagggaggagg
gagctcTCGGTGCTGTGAGGCCTTGACTAGGTCActcgccttgcccttgt
ACATGAGGCAGGGGGAACAGGCCGCTCTGGTGCTGCCTTTGAAGGActcg
gccttcctccgcttgctGGTGCACGGCTGTTGCCTATACTACGGCTTGCG
CTCACACAGCGAAGACCTCCCACAAGTCTGGAACCCTGACGCGGAGAGGG
TACGTGCCGTGGTAGTTGTCAAGCCAGCGGACGTGGCAGCCGCTGCCTGG
TCCCCGTCGTGGATAAGTCTGTGTGCCTTCATCAAACACAGTCGCCTGCA
GCAGCACCTGCAATATAAGCaccgtggcggcgggcgaTGCCTGAAAGAGA
CCACACAGGAGGATGGTCCTATCACGCAAGTTTCGACGACGTGACTCGTG
AAGACGGCAATAAGTTAGCGACAGGTGTCTTTGAAAACTCGTTTTTCCTC
ACTTTGGTACAGTCTCACCGATCTCAACGCTTGCAAGCACCAGGTAATTG
TAGGCCAACACGAACCTCATGGAATGGAACGACGTGATGAAAGAGCAAAA
TGTCGCACAGCAAGTATTGTTGTATCAGCCGAGAGTATGCCAAGGGCGAG
CTGTATGTACAGGAAAGTGAAAAGGGCCTCATGCTCAAGCGTAGAGCGTG
TGAGATATGGAGATGGAAAGTAGtcaaagaaaaaaggaaactATATGAAG
AAATAGTGCTGAATCTTATGGTCAAATGTACACTCTCCTACTTTTAAAAC
CCTCGCTTCATCTGCCTCCTCGATCTATCAAGCCAGCTGACCAGTCGAAA
GCAAGTCCAGCTCACGAATTTGACGTGGTTCGGTACCCCTTGGGATCTGA
GCAACTCTTAGTCGGAGTAGAGACATGCTGACTCACTGTCCTGCTGACGT
GAGAAGCCAAGGCTTgagggcgaaaggaggacatgggaTGAGGCGTGAGA
CGAGGTCGCCGTCGTCAAGTTCTTCGAGATGGCAGAGTGGGTTATTCCTG
GGGAGGCGTGCCCTTCTCTCTCATTTGTTGCCGTCGAACCTCTTCTTGCC
TCATTTGCCCATACGATCGATTCTTTAAAGTACACCTTAGACCATATCTA
AGCTTTCTGGTGCGAGCGGTCATTGTTTTGGCCAGTAGAAGTCTCGACAG
GATGATGAAACGGCTTTTGAAGAAGCAGCCTAGCAGAGACAAAGAGACGT
ACGAGCGCGTCCCCGGGGCCGCGGCCGGAGGCGCAACGAAGACAGAGCGA
AATCAGGAATACATCAGGTTCGCAGACATGCAAGAACGCCTTGAAGATCT
GAAAGAGCAGTGGAACGATGTGATCACACCTCGTCTAGAGACGTTTGAGG
CCATACGAGAAGAGATCGGTACGCTGGAGATCCCACCACCGCTACACTAC
CCCCCTGAGCCACCGTACACGGTAGACTGCTTTGATTTTACAGCGGATTC
GGACGAATCGGAAGGGGGTACATCCATTCAGACGCCCCTACCAACGCAGG
ATGCCGCCGGGCGCTTGCCCTTACAGCAGTCGGATTCTGAATCCCAGCCC
GTGCGGCCTCAAACGCGCCACTTAGAATACGCGCCAGGCACGCTGCCCAC
TTCCTTTAGTTTTGCGTGTGGTGGTTGGCTGCAATTTTACATGTTTGGTG
TTGCAAAGTGTCTGAAAGACCATGCCCTTCACACAGAGGCCAGGTTTTCG
GGATGCTCGGCTGGCGCTTTGACAGCGCTGGGCCTGTGTGTGGAGCCTAG
CTCTTTCGACAAGGCGGTGGAGTACTGCAAGGCAGTTTGTATCCCTCGCT
GCAGGGGCACCCTGTTGGGCCCATTTTTGTTGCATAAGTACGTGCGGGGC
TGTCTGGATTACAGCGGTTGTTTGGAAGAGCACTGGCAGCGGGCGAACGG
GAGGCTGTCTGTAGCGGTCACGGGCCTCCCCGATTTTCGAGCCATCCGCA
TAAATGATTTCAGGTCAAAGGAGGAACTTATCTCTGCGCTTATGGCTTCC
GCAGCCGcgtttcccctctccccgcccgtccGGCGGCGCAACAAATGGCT
CATCGACGGGGGCCTGTCGGACTTCCAGCCCGTCCTCGAGTCCCGCACCG
TCACGGTCAACCCCTTTTATTTCTCGCAAGCCGACATTCGGCCATCACGA
TACGTCCCAGCTTGGTGGTCCCTGCTGCCGCCGTCGCACTCAGGTACGGT
GGATTGGCTGTACGACCTAGGTTTCTGCGACACCCTGCGATGGATGCGCT
CTGTGAACCTGGAAAGCAAGTGCGCCGCCCGCTGCCGCAAGGACCCCTCC
GACCCACTTTCGTGCAGGCACCGGCCTACACGCGAGAAGCATCCCTTCGA
TCAGTCGAATAAGTCCTCCTTTGGCAGGTTTTTCGGGTACGGGCGGTGGc
ccatcctcttcgaccTGATGACCATGCTGCTTGTCCAGACCGTCTGGCGC
ACCACTGCCTACGTGCTCATTTACACCGAGATCTCGCTCAAGTTTGTGTA
CGTGGGCATCTGTGCCCTCGCCATGGAGGCTTTCGCCATGCGGTGGGCGC
TTCTTACGGGCGGGGtcctcctcgcgccctccttggctCACATGCTAGCT
GCCTTGGCGGCCATCATCTCCATCAAACTCAGCCTTGATGGGTCtgcggg
acggaggcagtGGCATGTAGCCCTGGAGCTTGCTGCATCCCTGCTCAGTG
TCAGTCTTTTTCTCCGCTCTTTGCCGATCCTAGGCAACCGCATCCACCTT
CGCAAGCATCACAAGCTATATCGTCAGTCTCTTATGTATCGCATCATGGT
TCATATAATCTAAGGACAGAGAAAAGGGGGTAGACTAGGAGTTTTGCCCA
TTTTATTTTCTTACGAGACACGCGTGGGTGTTATTCCAATTTTTTTACAA
AATCAAGGAAAGAGCGCACAATGGTTGAGCCAATGTTTGTGAGGGGGCAT
CCTATGATCTGAAAAGCGGACTATAAAAAGACGAAATTGACAGCCTCATG
TGTATTTCGAATAGGAAGCAGCACTTCTATTCGTTTCCTCGAAAGACTTT
TCTTAACTTAATCCTCAACATTTGTCTTGCTCGTCTGCAAGGGCTCGCGA
GCACAAGAAGTAGAAGTCACCTATCTGCGCTATTACGGGATCGGATGTCT
TTGACCAGTAACTTTTGCTAAGACAACGATTTCCAATCAGCGTGCTCAAG
CTT

Coding sequence (CDS) from alignment at KK037249.1:534656..539808+

>rna8664 ID=rna8664|Name=rna8664|organism=Nannochloropsis gaditana|type=CDS|length=1662bp|location=Sequence derived from alignment at KK037249.1:534656..539808+ (Nannochloropsis gaditana)
ATGATGAAACGGCTTTTGAAGAAGCAGCCTAGCAGAGACAAAGAGACGTA
CGAGCGCGTCCCCGGGGCCGCGGCCGGAGGCGCAACGAAGACAGAGCGAA
ATCAGGAATACATCAGGTTCGCAGACATGCAAGAACGCCTTGAAGATCTG
AAAGAGCAGTGGAACGATGTGATCACACCTCGTCTAGAGACGTTTGAGGC
CATACGAGAAGAGATCGGTACGCTGGAGATCCCACCACCGCTACACTACC
CCCCTGAGCCACCGTACACGGTAGACTGCTTTGATTTTACAGCGGATTCG
GACGAATCGGAAGGGGGTACATCCATTCAGACGCCCCTACCAACGCAGGA
TGCCGCCGGGCGCTTGCCCTTACAGCAGTCGGATTCTGAATCCCAGCCCG
TGCGGCCTCAAACGCGCCACTTAGAATACGCGCCAGGCACGCTGCCCACT
TCCTTTAGTTTTGCGTGTGGTGGTTGGCTGCAATTTTACATGTTTGGTGT
TGCAAAGTGTCTGAAAGACCATGCCCTTCACACAGAGGCCAGGTTTTCGG
GATGCTCGGCTGGCGCTTTGACAGCGCTGGGCCTGTGTGTGGAGCCTAGC
TCTTTCGACAAGGCGGTGGAGTACTGCAAGGCAGTTTGTATCCCTCGCTG
CAGGGGCACCCTGTTGGGCCCATTTTTGTTGCATAAGTACGTGCGGGGCT
GTCTGGATTACAGCGGTTGTTTGGAAGAGCACTGGCAGCGGGCGAACGGG
AGGCTGTCTGTAGCGGTCACGGGCCTCCCCGATTTTCGAGCCATCCGCAT
AAATGATTTCAGGTCAAAGGAGGAACTTATCTCTGCGCTTATGGCTTCCG
CAGCCGcgtttcccctctccccgcccgtccGGCGGCGCAACAAATGGCTC
ATCGACGGGGGCCTGTCGGACTTCCAGCCCGTCCTCGAGTCCCGCACCGT
CACGGTCAACCCCTTTTATTTCTCGCAAGCCGACATTCGGCCATCACGAT
ACGTCCCAGCTTGGTGGTCCCTGCTGCCGCCGTCGCACTCAGGTACGGTG
GATTGGCTGTACGACCTAGGTTTCTGCGACACCCTGCGATGGATGCGCTC
TGTGAACCTGGAAAGCAAGTGCGCCGCCCGCTGCCGCAAGGACCCCTCCG
ACCCACTTTCGTGCAGGCACCGGCCTACACGCGAGAAGCATCCCTTCGAT
CAGTCGAATAAGTCCTCCTTTGGCAGGTTTTTCGGGTACGGGCGGTGGcc
catcctcttcgaccTGATGACCATGCTGCTTGTCCAGACCGTCTGGCGCA
CCACTGCCTACGTGCTCATTTACACCGAGATCTCGCTCAAGTTTGTGTAC
GTGGGCATCTGTGCCCTCGCCATGGAGGCTTTCGCCATGCGGTGGGCGCT
TCTTACGGGCGGGGtcctcctcgcgccctccttggctCACATGCTAGCTG
CCTTGGCGGCCATCATCTCCATCAAACTCAGCCTTGATGGGTCtgcggga
cggaggcagtGGCATGTAGCCCTGGAGCTTGCTGCATCCCTGCTCAGTGT
CAGTCTTTTTCTCCGCTCTTTGCCGATCCTAGGCAACCGCATCCACCTTC
GCAAGCATCACAAGCTATATCGTCAGTCTCTTATGTATCGCATCATGGTT
CATATAATCTAA

Synonyms

Publications