rna8662, rna8662 (mRNA) Nannochloropsis gaditana

Overview
Namerna8662
Unique Namerna8662
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length918
Alignment locationKK037249.1:531884..532771 +

Link to JBrowse

Properties
Property NameValue
ProductNicotinamide N-methyltransferase, putative
Orig transcript idgnl|cribi|Naga_100052g26.1172.mrna
Orig protein idgnl|cribi|Naga_100052g26.1172
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:531884..532771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100052g26gene8395Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8662rna8662-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22047.1cds8635Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8662 ID=rna8662|Name=rna8662|organism=Nannochloropsis gaditana|type=mRNA|length=918bp
ATGCATCAGCGGAATTTCAAAGGGTACGGTCAATCTTCTCCTGATCCTAA
ATGGCCAGGAAATGCCAAGCTGGCGGTGCAGTTTGTGATTAATTATGAAG
AAGGGGGGGAGAATTGCGTCTTGGACGGAGACGGCCAGTCAGAGCACCTG
CTCTCAGAAATAGTCGGGGCGGCTCCTTTGCCCGGAGTGCGGCACGTAAA
CATGGAATCTCTGTACGAATATGGCTCACGAGCTGGCTTTTGGCGTCTCT
ACCGCCTTTTTACAAACAAAAAAGTGCCCGTTACTGTGTATGCCGTAGCT
CTTGCACTTGCCAAGAATCCAGAGGCCGGCAAGGCAATGATTGATGCCGG
ATGGGAAGTTGCCAGTCATGGATATAGGTGGATAGACTACCAGTACGTGG
GCGAGACCGTCGAGAGGGAGCATATACGAAAAGCCGTGGCTGTAACCACA
GACGTCTGTGGGACTCGACCAGTCGGCATCTACCAAGGCAAGCCCAATGT
CAACACGCGCCGTCTCATTGTGGAAGAGGGCGGCTTCCTTTACGATTCAG
ACTGCTACAGTGACGACCTGCCATTCTGGAATACGGATTACGGGCGGCCG
CACCTCGTAATTCCGTACACACTGGACGTCAACGATATGCGCTTCGCCAC
GCCCCAGGGATTTAATTGTGGAGACCAATTTTTCACGTATCTCAAGGACA
CGTTTGACTACTTACGCCAAGAGGGTCTGAACGGAGATCCCAAAATGATG
TCTGTTGGATTGCATTGCCGTATTGTGGGTCACCCCGGGCGGACTGCAGC
TTTGGCACGCTTTTTAGACTACGCTAAAAGCTTCGACGATGTGTGGATTT
GTCGCCGCATTGACATCGCAAATCACTGGCATGTTAATCATCCTGCTTCC
ACGGGTATAAAGTCTTAA
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protein sequence of rna8662

>rna8662-protein ID=rna8662-protein|Name=rna8662|organism=Nannochloropsis gaditana|type=polypeptide|length=295bp
MSFTFGFDLPSNPSTTSNTVAQLGASPSSHTTWGHATSTPRVIHLDELTT
APAFCSISVLTRTYDDPKGHFRVVKNVEGVIADLPEGSDLVPGVYEGGLK
IWESSKDLVCYLQNQRIIRPLYRVLELGCGHGLPGIHALQQGADSVVFSD
LNEEVLREVTRPNIFLNVANRALSSARISLICGDWEALPQILGVDKPVDF
NVIVSAETFYTPAVTNKLLRCIHRYLATTPEALALVAGKRYYFGTGGSVA
NLMSQASALGMRSRVVASSEDGRSNIRDIVEIRCKMEGLVRGKKI
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mRNA from alignment at KK037249.1:531884..532771+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8662 ID=rna8662|Name=rna8662|organism=Nannochloropsis gaditana|type=mRNA|length=888bp|location=Sequence derived from alignment at KK037249.1:531884..532771+ (Nannochloropsis gaditana)
ATGTCATTTACATTCGGCTTCGACTTACCTTCGAACCCATCAACGACATC AAACACTGTGGCCCAACTCGGAgcgtctccgtcctctcATACGACCTGGG GACATGCCACTTCAACACCACGCGTAATCCACCTCGATGAGTTGACCACA GCTCCTGCATTTTGCTCGATAAGTGTACTTACTCGCACGTATGACGATCC CAAGGGACATTTTCGTGTGGTTAAAAATGTGGAGGGAGTGATTGCCGACT TGCCAGAGGGAAGTGATCTCGTTCCCGGCGTGTATGAGGGAGGCTTGAAG ATCTGGGAATCCAGCAAGGATTTAGTCTGTTACCTCCAGAACCAAAGAAT AATTCGACCTCTTTATCGTGTGCTGGAGCTGGGATGCGGCCACGGGCTTC CAGGTATTCACGCTTTACAACAAGGGGCTGATAGTGTAGTTTTCTCCGAT TTGAATGAGGAGGTCCTCCGGGAGGTTACACGACCTAACATATTTCTGAA TGTAGCTAATAGAGCACTATCCTCTGCAAGGATAAGCTTGATCTGTGGCG ACTGGGAGGCATTGCCCCAAATTCTTGGTGTAGACAAGCCGGTAGACTTT AACGTCATTGTTAGCGCAGAGACATTTTACACGCCTGCTGTTACAAACAA ACTTTTGCGTTGCATTCATCGCTACTTAGCCACAACACCGGAGGCATTGG CATTGGTGGCTGGTAAGCGGTACTACTTTGGCACAGGCGGATCTGTGGCC AATTTGATGTCGCAAGCCAGTGCTCTTGGCATGCGGAGTCGTGTGGTGGC CTCGTCTGAAGACGGGAGAAGCAACATCCGAGATATCGTGGAGATAAGAT GTAAGATGGAAGGACTTgtaaggggaaaaaaaatataa
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Coding sequence (CDS) from alignment at KK037249.1:531884..532771+

>rna8662 ID=rna8662|Name=rna8662|organism=Nannochloropsis gaditana|type=CDS|length=888bp|location=Sequence derived from alignment at KK037249.1:531884..532771+ (Nannochloropsis gaditana)
ATGTCATTTACATTCGGCTTCGACTTACCTTCGAACCCATCAACGACATC
AAACACTGTGGCCCAACTCGGAgcgtctccgtcctctcATACGACCTGGG
GACATGCCACTTCAACACCACGCGTAATCCACCTCGATGAGTTGACCACA
GCTCCTGCATTTTGCTCGATAAGTGTACTTACTCGCACGTATGACGATCC
CAAGGGACATTTTCGTGTGGTTAAAAATGTGGAGGGAGTGATTGCCGACT
TGCCAGAGGGAAGTGATCTCGTTCCCGGCGTGTATGAGGGAGGCTTGAAG
ATCTGGGAATCCAGCAAGGATTTAGTCTGTTACCTCCAGAACCAAAGAAT
AATTCGACCTCTTTATCGTGTGCTGGAGCTGGGATGCGGCCACGGGCTTC
CAGGTATTCACGCTTTACAACAAGGGGCTGATAGTGTAGTTTTCTCCGAT
TTGAATGAGGAGGTCCTCCGGGAGGTTACACGACCTAACATATTTCTGAA
TGTAGCTAATAGAGCACTATCCTCTGCAAGGATAAGCTTGATCTGTGGCG
ACTGGGAGGCATTGCCCCAAATTCTTGGTGTAGACAAGCCGGTAGACTTT
AACGTCATTGTTAGCGCAGAGACATTTTACACGCCTGCTGTTACAAACAA
ACTTTTGCGTTGCATTCATCGCTACTTAGCCACAACACCGGAGGCATTGG
CATTGGTGGCTGGTAAGCGGTACTACTTTGGCACAGGCGGATCTGTGGCC
AATTTGATGTCGCAAGCCAGTGCTCTTGGCATGCGGAGTCGTGTGGTGGC
CTCGTCTGAAGACGGGAGAAGCAACATCCGAGATATCGTGGAGATAAGAT
GTAAGATGGAAGGACTTgtaaggggaaaaaaaatataa
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Synonyms
Publications