rna8661, rna8661 (mRNA) Nannochloropsis gaditana

Overview
Namerna8661
Unique Namerna8661
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1094
Alignment locationKK037249.1:530256..531383 +

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Properties
Property NameValue
Producturate catabolism protein
Orig transcript idgnl|cribi|Naga_100052g25.1153.mrna
Orig protein idgnl|cribi|Naga_100052g25.1153
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:530256..531383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100052g25gene8394Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8661rna8661-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22028.1cds8634Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8661 ID=rna8661|Name=rna8661|organism=Nannochloropsis gaditana|type=mRNA|length=1094bp
TCCTTCCCATCGGGGTCGGACAGAGAGGAGCACGAGGGGGAGCCCGGACA
CAGAGATGGTGAAGAAGGCTTCAGCAGCAGCCAGACAGTGGCAAGATCAA
ATGTAGAAAGGCGACATTACATGACGTTCAAATCAAATGCATTTCACAAC
CTATTTCAAGCCTCTTTGCAGAACCCCGAATGCCGGTCTCTTGATCGGAG
ACTAGATGTCGACCAGGCCGGCTCTTCACCTGCTTCGCTTAAGAAACGCA
GTGGGTATTAAGGACCAACTTTGGCTTGAGGAAGCCTTGTTGAGACATGA
TACACGCAATTGGTGCCTCCTTAAAGACGGAGAGCCAGCGGGGGGCACGG
GGCGACCTACCATCGTTTTAGGTATTGGCGGAAAGCCCTCAAAGCTTGTA
CATTTAGACCGCGTAATACAAGACGAAATACCAGTACTACGGCGTTTCTC
GGGAGGAGGAACAGTTATCGTTGATCAAGACTCCCTTTTTGTGACATTTA
TCATGAATACGGTTGAGGTCACGCCAAATCAGCCTTATCCGAGACCGATA
ATGGAATGGACGGCGGGCCTTTACAGGCCCGTCTTTGAACGCCTAAGATC
GGCCCAGACCAAGCCCTTTGAGCTTCGTGAAAACGACTACGTGTTTGGAT
CCTTGAAGTTTGGTGGTAATGCCCAGAGCATAGTCAAAGACCGATGGCTG
CATCACACGTCATTCCTCTGGGACTTCCAGCGTTCAAATATGGAGTACTT
GACACTGCCAGAGCGGCGGCCCGAGTACCGGCAAGATCGGAGCCACTCTT
CCTTCTTGACAAGTCTAAAGGACCACACGCCTCAGGGAGATCGACTCGCA
TTATTTCGGGAATTGGAGCTCGAACTTGGCAGTCACTTCAGAGTGCAAGC
TGCCAGTGAGCCTGACGTGCGGTCAGATGTAGTAGAGAGAAGGCTTGGTG
GGATGGAGGCCTGGGGGAAAAAGGCGCGAACGCGACAGGTATCACCAGCC
GAAGAGCTTTCCAAGCTTGACAACCATTCACGTTGCTGAAAGCAACGGTA
CAAGACGTTGTATCACATTGATTTTGAAGTAGCAAAAAAAAATC
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protein sequence of rna8661

>rna8661-protein ID=rna8661-protein|Name=rna8661|organism=Nannochloropsis gaditana|type=polypeptide|length=305bp
MHQRNFKGYGQSSPDPKWPGNAKLAVQFVINYEEGGENCVLDGDGQSEHL
LSEIVGAAPLPGVRHVNMESLYEYGSRAGFWRLYRLFTNKKVPVTVYAVA
LALAKNPEAGKAMIDAGWEVASHGYRWIDYQYVGETVEREHIRKAVAVTT
DVCGTRPVGIYQGKPNVNTRRLIVEEGGFLYDSDCYSDDLPFWNTDYGRP
HLVIPYTLDVNDMRFATPQGFNCGDQFFTYLKDTFDYLRQEGLNGDPKMM
SVGLHCRIVGHPGRTAALARFLDYAKSFDDVWICRRIDIANHWHVNHPAS
TGIKS
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mRNA from alignment at KK037249.1:530256..531383+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8661 ID=rna8661|Name=rna8661|organism=Nannochloropsis gaditana|type=mRNA|length=1128bp|location=Sequence derived from alignment at KK037249.1:530256..531383+ (Nannochloropsis gaditana)
ATGCATCAGCGGAATTTCAAAGGGTACGGTCAATCTTCTCCTGATCCTAA
ATGGCCAGGAAATGCCAAGCTGGCGGTGCAGTTTGTGATTAATtatgaag
aagggggggagaattGCGTCTTGGACGGAGACGGCCAGTCAGAGCACCTG
CTCTCAGAAATAGTCGGGGCGGCTCCTTTGCCCGGAGTGCGGCACGTAAA
CATGGAATCTCTGTACGAATATGGCTCACGAGCTGGCTTTTGGCGTCTCT
ACCGCCTTTTTACAAACAAAAAAGTGCCCGTTACTGTGTATGCCGTAGCT
CTTGCACTTGCCAAGAATCCAGAGGCCGGCAAGGCAATGATTGATGCCGG
ATGGGAAGGTAAGTGTATTTCTGGGAGGGAAACGTGAAGGCTGACATTGA
TGAGATATCCGTAATCACTGTAAAAACCATGATGGTAGTTGCCAGTCATG
GATATAGGTGGATAGACTACCAGTACGTGGGCGAGACCGTCGAGAGGGAG
CATATACGAAAAGCCGTGGCTGTAACCACAGACGTCTGTGGGACTCGACC
AGTCGGCATCTACCAAGGCAAGCCCAATGTCAACACGCGCCGTCTCATtg
tggaagagggcggcTTCCTTTACGATTCAGACTGCTACAGTGACGACCTG
CCATTCTGGAATACGGATTACGGGCGGCCGCACCTCGTAATTCCGTACAC
ACTGGACGTCAACGATATGCGCTTCGCCACGCCCCAGGGATTTAATTGTG
GAGACCAATTTTTCACGTATCTCAAGGTAATTTCAGTTGATAGATTCATT
TATATAAAATCCATAGGCTCGAATCACAAGAGTGTTTAACCTTTGGAAAA
GATTGATTGTCTAACGATTCTCTACGGACGTTTCTTTGTGAAAAACTCCC
GATTAGGACACGTTTGACTACTTACGCCAAGAGGGTCTGAACGGAGATCC
CAAAATGATGTCTGTTGGATTGCATTGCCGTATTGTGGGTCACCCCGGGC
GGACTGCAGCTTTGGCACGCTTTTTAGACTACGCTAAAAGCTTCGACGAT
GTGTGGATTTGTCGCCGCATTGACATCGCAAATCACTGGCATGTTAATCA
TCCTGCTTCCACGGGTATAAAGTCTTAA
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Coding sequence (CDS) from alignment at KK037249.1:530256..531383+

>rna8661 ID=rna8661|Name=rna8661|organism=Nannochloropsis gaditana|type=CDS|length=2754bp|location=Sequence derived from alignment at KK037249.1:530256..531383+ (Nannochloropsis gaditana)
ATGCATCAGCGGAATTTCAAAGGGTACGGTCAATCTTCTCCTGATCCTAA
ATGGCCAGGAAATGCCAAGCTGGCGGTGCAGTTTGTGATTAATtatgaag
aagggggggagaattGCGTCTTGGACGGAGACGGCCAGTCAGAGCACCTG
CTCTCAGAAATAGTCGGGGCGGCTCCTTTGCCCGGAGTGCGGCACGTAAA
CATGGAATCTCTGTACGAATATGGCTCACGAGCTGGCTTTTGGCGTCTCT
ACCGCCTTTTTACAAACAAAAAAGTGCCCGTTACTGTGTATGCCGTAGCT
CTTGCACTTGCCAAGAATCCAGAGGCCGGCAAGGCAATGATTGATGCCGG
ATGGGAAGTTGCCAGTCATGGATATAGGTGGATAGACTACCAGTACGTGG
GCGAGACCGTCGAGAGGGAGCATATACGAAAAGCCGTGGCTGTAACCACA
GACGTCTGTGGGACTCGACCAGTCGGCATCTACCAAGGCAAGCCCAATGT
CAACACGCGCCGTCTCATtgtggaagagggcggcTTCCTTTACGATTCAG
ACTGCTACAGTGACGACCTGCCATTCTGGAATACGGATTACGGGCGGCCG
CACCTCGTAATTCCGTACACACTGGACGTCAACGATATGCGCTTCGCCAC
GCCCCAGGGATTTAATTGTGGAGACCAATTTTTCACGTATCTCAAGGACA
CGTTTGACTACTTACGCCAAGAGGGTCTGAACGGAGATCCCAAAATGATG
TCTGTTGGATTGCATTGCCGTATTGTGGGTCACCCCGGGCGGACTGCAGC
TTTGGCACGCTTTTTAGACTACGCTAAAAGCTTCGACGATGTGTGGATTT
GTCGCCGCATTGACATCGCAAATCACTGGCATGTTAATCATCCTGCTTCC
ACGGGTATAAAGTCTTAAATGCATCAGCGGAATTTCAAAGGGTACGGTCA
ATCTTCTCCTGATCCTAAATGGCCAGGAAATGCCAAGCTGGCGGTGCAGT
TTGTGATTAATtatgaagaagggggggagaattGCGTCTTGGACGGAGAC
GGCCAGTCAGAGCACCTGCTCTCAGAAATAGTCGGGGCGGCTCCTTTGCC
CGGAGTGCGGCACGTAAACATGGAATCTCTGTACGAATATGGCTCACGAG
CTGGCTTTTGGCGTCTCTACCGCCTTTTTACAAACAAAAAAGTGCCCGTT
ACTGTGTATGCCGTAGCTCTTGCACTTGCCAAGAATCCAGAGGCCGGCAA
GGCAATGATTGATGCCGGATGGGAAGTTGCCAGTCATGGATATAGGTGGA
TAGACTACCAGTACGTGGGCGAGACCGTCGAGAGGGAGCATATACGAAAA
GCCGTGGCTGTAACCACAGACGTCTGTGGGACTCGACCAGTCGGCATCTA
CCAAGGCAAGCCCAATGTCAACACGCGCCGTCTCATtgtggaagagggcg
gcTTCCTTTACGATTCAGACTGCTACAGTGACGACCTGCCATTCTGGAAT
ACGGATTACGGGCGGCCGCACCTCGTAATTCCGTACACACTGGACGTCAA
CGATATGCGCTTCGCCACGCCCCAGGGATTTAATTGTGGAGACCAATTTT
TCACGTATCTCAAGGACACGTTTGACTACTTACGCCAAGAGGGTCTGAAC
GGAGATCCCAAAATGATGTCTGTTGGATTGCATTGCCGTATTGTGGGTCA
CCCCGGGCGGACTGCAGCTTTGGCACGCTTTTTAGACTACGCTAAAAGCT
TCGACGATGTGTGGATTTGTCGCCGCATTGACATCGCAAATCACTGGCAT
GTTAATCATCCTGCTTCCACGGGTATAAAGTCTTAAATGCATCAGCGGAA
TTTCAAAGGGTACGGTCAATCTTCTCCTGATCCTAAATGGCCAGGAAATG
CCAAGCTGGCGGTGCAGTTTGTGATTAATtatgaagaagggggggagaat
tGCGTCTTGGACGGAGACGGCCAGTCAGAGCACCTGCTCTCAGAAATAGT
CGGGGCGGCTCCTTTGCCCGGAGTGCGGCACGTAAACATGGAATCTCTGT
ACGAATATGGCTCACGAGCTGGCTTTTGGCGTCTCTACCGCCTTTTTACA
AACAAAAAAGTGCCCGTTACTGTGTATGCCGTAGCTCTTGCACTTGCCAA
GAATCCAGAGGCCGGCAAGGCAATGATTGATGCCGGATGGGAAGTTGCCA
GTCATGGATATAGGTGGATAGACTACCAGTACGTGGGCGAGACCGTCGAG
AGGGAGCATATACGAAAAGCCGTGGCTGTAACCACAGACGTCTGTGGGAC
TCGACCAGTCGGCATCTACCAAGGCAAGCCCAATGTCAACACGCGCCGTC
TCATtgtggaagagggcggcTTCCTTTACGATTCAGACTGCTACAGTGAC
GACCTGCCATTCTGGAATACGGATTACGGGCGGCCGCACCTCGTAATTCC
GTACACACTGGACGTCAACGATATGCGCTTCGCCACGCCCCAGGGATTTA
ATTGTGGAGACCAATTTTTCACGTATCTCAAGGACACGTTTGACTACTTA
CGCCAAGAGGGTCTGAACGGAGATCCCAAAATGATGTCTGTTGGATTGCA
TTGCCGTATTGTGGGTCACCCCGGGCGGACTGCAGCTTTGGCACGCTTTT
TAGACTACGCTAAAAGCTTCGACGATGTGTGGATTTGTCGCCGCATTGAC
ATCGCAAATCACTGGCATGTTAATCATCCTGCTTCCACGGGTATAAAGTC
TTAA
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Synonyms
Publications