rna8657, rna8657 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8657
Unique Name	rna8657
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1359
Alignment location	KK037249.1:521253..524336 -

Link to JBrowse

Properties


Property Name	Value
Product	phosphoribosylformylglycinamidine synthase
Orig transcript id	gnl\|cribi\|Naga_100052g21.1185.mrna
Orig protein id	gnl\|cribi\|Naga_100052g21.1185
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:521253..524336 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100052g21	gene8390	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22060.1	cds8630	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8657	rna8657-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:521253..524336-
coding sequence from alignment at KK037249.1:521253..524336-

mRNA sequence

>rna8657 ID=rna8657|Name=rna8657|organism=Nannochloropsis gaditana|type=mRNA|length=1359bp
ATGCGCCTTATTGTCCGTCGCGCTCAGCTGCATCGGCGCGGCTGGCACGT
CTGGAGGCAGCTCATACTTCCTGCAAACCGCTCGTCTAAAAACCTTGGCA
ACAGGGCACTTACCAAGCCATTGGAGTCCCTGCCAACACCATCAGATATA
TGTCTACATTCGCCTTTTCAACTGCGTTGTCTGGCGAGTTTACCGGAGGG
TGTTCAGGACAACATAATCCCTCCTGTTAGGTACACCGCAGCCCCGCGAG
TATCCTCCTCGCTTCCATCCGGTGGCGCCCTCATCGCCGATGGAAAAGAT
CAGCCACAAGCAACGCAGAAGAAGGGGAGAAGAGGTAAGGGTGCGATAGA
TCGCGAATTAGAAGACATTGTGGAAGGTAGCGACTCCCAAATGACGCCTC
AGTCGACGCACGGTCAGAAGAGGAAGTCAAGGGCTCCCGTCAAGGCATCA
AATGCTGTCCTCGAGCCCTTGTATCATCCAACCCTCCGAATGTCTGAAGA
ATTATCTACTGAGGGTAAATTATCTGGTAGTGAGACCATGAGAAAGGGTA
GACGAAAGGCAAAGGATGAGGAGAAAAGCAGAGGAGAAAAAAAGGAAAAG
AATGGGAGGAAGAACGAGAAGAAGCTGCCTATCTCGGACTATTCACCCGC
TGCCCTAGCCGGAAATAAAATGGCTGCGTGGGACATTGCTTACACTCCTA
GCTTGGCAGCTGCCGAGCACTTAGTGGAGGAAGTCCGGCAAAATCTGTCT
TATCGATATCACGCGCAAAAGGTATTCTTGGACTACATACCGGACACGAT
CTCAGCGAGGGACGTGGGCCTGATCTTCGCAGGTCTTGATGGGACGCGTG
ATATTGACGCCGTGATAATTCTGGAGGCGATACGCGCAAGGGAGCGCCGT
CCCCGAAATGCTGTACGGGAGGGCGGCCCTAGAACAGCCATAATTCAGTT
CGGTAGCAGAAGCACCTACGACAGAGTGCTAAGCGAGGACGTGCGAATCT
TCGGAATTTGTTGGCAGCGCCACACTTACAAGCCCACTCGGGGGCCGGGT
CGCAATCTTTTCTTCACGTTATGCTCCGGTGAATACACGATCCTCGACAT
GGCGGGCAAGGCAGTCAAAACATTACTGTGGCAAATAATAACGAATCTGC
CCTTGACAGGGGTTCATAATTTTAAGAGAACGATTTTATGTCTCAGATCA
TCCAGCATATGCACACACTTAACTGAGTCAGTGTATCACAGACGCAAAAG
TGACGGGCGCAGCAAAAGTAGATCAACTATATTTTATACATTGCGCAGAC
TGCTTGTGGAGGTATCTCGACCACTATCTTCCATTTACATCGGTATCACG
AATATCTAG

protein sequence of rna8657

>rna8657-protein ID=rna8657-protein|Name=rna8657|organism=Nannochloropsis gaditana|type=polypeptide|length=976bp
MPAWRGAEFLKPIMFSAGLGKVPAEALLKRSPSVGMAVVKLGGPAYRVGL
GGGAASSKVGGDPELDLQAVQRGDPEMGNKVGRVVRACVEMQHASNSLVL
ESVHDQGAGGNANVLKELVAPAGADVFLDRIERGDSSLTPLEVWGAEYQE
SQGLLVNGSQALAALNRICRRESAPMAVVGHVTGNGAIRVFESEEQSGDG
QAVQALVDLPLEPLLSHRPKRVIQATRERTGAQSSNADVEAGEGIGGRRG
REGDKTALQDTLYKVLSVVSVGSKAFLTNKVDRSVTGLVAAQPCVGPLHL
PVGDVGVTALSFWGVDGVATALGECPGIGIAGGNEGISAMVRMAVGEALT
NLVSAPLTGWADIKLQANWMWPGREGASAGQLYDGVEALRGVLLELGLAL
DGGKDSLSMATLCEDGIRVPSPATVVVTAYAPCCDVSRVLTPDVKVPGEC
DGQEGVLLFLDVSGSGPRPKELGGSAWAEIKRIDGDQRTPDMRDPALLRR
AFEAVQGLSKEGKIQACHDVSSGGLVTTVLEMAISGDAGARLVLPAGDPH
DPLLSSQRFTEASLFSEELGLVLELKGQDLALVQNDLQDQGIPYSTIGFS
TPERKVEIRGADGRILLSEETEALHAKWCAMSLQLERLQASPACIEAEEA
VLSSLRRPVWAIPPSLTTARPSPSTPNRTRLRVGVLREQGSNGDREMAAA
LHSAGFQVWDLTVADLLQGQVDLGSFHGLAFVGGFSYGDALGSARGWRSV
LLGNPRVEAQLRHFFARPETWSLGLCNGCQLLVALGIVPDLALEDRPNPI
NCKKPLVWLGENDSGRFESRFVTVKVGPSPAVLLKGLEGLVMGIWSAHAE
GKMHFSDETLMNQILDRGLAPVRYTDPWDRGGERGGTEQYPFNPNGSPRG
VAALCSADGRHLAMMPHPERSWLRWQMPWMAQAGYDSAKSPSGKVNAGHE
EVYTPWFRLFQNAFHFSVKMFGNDVS

mRNA from alignment at KK037249.1:521253..524336-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8657 ID=rna8657|Name=rna8657|organism=Nannochloropsis gaditana|type=mRNA|length=3084bp|location=Sequence derived from alignment at KK037249.1:521253..524336- (Nannochloropsis gaditana)
CCGGCTCATGTGGCTGCGGCGCTTGATATCCTGCTTCGTGCCAGCGACGG
GGCCTCGGACTACGCCAACAAGTACGGAGAGCCTCTGGTGGCCGGGTTCG
CGCGAGCAATGCCAGCCTGGCGCGGCGCAGAGTTCCTGAAGCCAATTATG
TTCTCGGCTGGTCTGGGCAAGGTCCCAGCAGAGGCACTTTTGAAACGCTC
GCCCAGTGTGGGTATGGCGGTGGTGAAGCTGGGTGGGCCCGCGTATCGCG
TGGGACTAGGGGGGGGCGCGGCCTCGAGCAAGGTGGGCGGTGACCCGGAG
TTGGATCTGCAGGCAGTGCAGCGAGGAGACCCGGAGATGGGGAACAAGGT
CGGGCGCGTGGTGCGGGCTTGCGTGGAGATGCAGCACGCCTCCAACTCCC
TGGTGCTGGAGAGCGTGCACGACCAGGGTGCTGGCGGCAATGCCAACGTG
CTCAAAGAACTGGTCGCTCCGGCGGGCGCCGACGTGTTCCTGGATCGCAT
CGAAAGAGGAGACAGTAGCCTGACGCCACTGGAGGTGTGGGGCGCCGAGT
ATCAAGAGAGCCAAGGCCTGCTTGTGAACGGCTCACAGGCGCTTGCCGCT
CTGAACCGCATCTGCCGGCGCGAGTCCGCCCCCATGGCGGTGGTTGGCCA
CGTCACAGGCAATGGCGCAATCCGCGTCTTCGAGAGTGAGGAGCAATCAG
GAGATGGGCAGGCTGTCCAGGCCTTGGTTGATCTTCCGCTGGAGCCGTTG
CTATCCCACCGTCCCAAGCGCGTCATCCAGGCGACTAGGGAAAGGACAGG
GGCTCAGAGCTCGAACGCAGACGTCGAGGCGGGGGAGGGGATCGGAGGTC
GGCGAGGTAGAGAGGGAGACAAGACAGCGCTTCAGGATACTCTTTACAAG
GTGTTGAGTGTTGTTTCTGTGGGAAGCAAAGCCTTCCTCACCAACAAAGT
GGATCGAAGCGTCACCGGGCTCGTGGCCGCCCAGCCCTGCGTGGGACCCC
TGCACCTGCCAGTGGGGGACGTGGGGGTGACCGCCTTGTCCTTCTGGGGC
GTCGACGGAGTGGCAACTGCCCTGGGAGAATGCCCTGGGATCGGTATCGC
GGGTGGCAATGAGGGAATCTCAGCCATGGTGCGCATGGCCGTCGGTGAGG
CGCTGACGAACCTGGTCTCAGCGCCTTTGACAGGGTGGGCGGACATCAAG
CTACAGGCGAACTGGATGTGGCCCGGGCGGGAGGGAGCCAGCGCGGGGCA
GCTCTATGATGGAGTGGAGGCCCTACGGGGGGTACTGCTCGAGCTAGGCC
TGGCTTTGGACGGGGGCAAAGACTCTCTGTCGATGGCCACGCTCTGTGAG
GACGGTATTCGCGTGCCCTCTCCGGCGACCGTGGTGGTAACGGCATACGC
GCCATGCTGCGACGTATCCCGAGTCTTGACACCGGATGTGAAGGTGCCCG
GTGAGTGCGACGGCCAGGAAGGTGTCCTCTTGTTCCTGGATGTGAGTGGG
AGCGGGCCGAGGCCGAAGGAGCTGGGGGGGTCGGCCTGGGCGGAGATAAA
GAGAATTGACGGAGACCAGAGGACGCCAGACATGCGAGACCCCGCTCTGC
TCCGTCGAGCATTCGAGGCTGTGCAAGGTCTCTCAAAAGAGGGGAAGATC
CAGGCGTGTCACGACGTGAGCTCCGGAGGCCTCGTCACAACGGTTCTGGA
GATGGCCATCAGCGGAGACGCCGGCGCTCGGCTGGTCCTGCCAGCGGGCG
ATCCGCATGATCCCCTGCTCTCGTCCCAGCGTTTCACGGAGGCAAGTCTT
TTCAGCGAAGAGCTCGGGCTGGTGCTGGAGCTCAAAGGACAGGACCTCGC
CCTCGTTCAAAATGATTTGCAAGATCAGGGTATTCCATACAGCACCATCG
GCTTTTCTACGCCTGAGAGGAAAGTAGAAATCCGAGGAGCCGACGGGCGG
ATTCTTTTGAGCGAAGAGACAGAAGCTTTGCATGCCAAATGGTGCGCCAT
GAGCCTTCAGCTCGAGAGGCTCCAAGCCAGCCCCGCGTGCATCGAGGCCG
AGGAGGCGGTCTTGTCGAGCCTCCGCCGACCAGTGTGGGCCATCCCGCCC
TCTCTGACGACCGCGCGTCCGAGCCCGTCGACTCCGAATCGGACGCGTCT
CAGAGTAGGCGTACTGCGAGAGCAAGGCAGCAACGGGGACAGGGAGATGG
CAGCCGCGTTGCACAGCGCTGGGTTCCAGGTGTGGGACCTGACAGTCGCC
GACCTGCTGCAGGGCCAGGTGGACCTCGGCTCCTTCCACGGGCTGGCTTT
CGTAGGAGGCTTCAGTTACGGGGATGCCTTGGGCTCGGCTAGGGGATGGA
GAAGTGTGCTCTTGGGCAATCCGCGCGTGGAGGCGCAGCTGCGTCATTTC
TTTGCAAGACCCGAGACTTGGAGCCTCGGGCTCTGCAACGGCTGCCAGTT
GCTCGTCGCTCTCGGGATTGTGCCGGACCTTGCTCTTGAGGATCGCCCCA
ATCCTATCAACTGCAAGAAACCTCTTGTTTGGCTGGGAGAGAATGATAGC
GGGCGATTTGAGAGTCGCTTCGTGACGGTCAAGGTGGGTCCCTCTCCTGC
TGTCCTCCTGAAAGGACTTGAAGGGCTAGTCATGGGAATCTGGAGTGCAC
ATGCCGAGGGGAAAATGCATTTTAGCGATGAAACTCTTATGAATCAAATT
CTTGACCGAGGTCTGGCACCAGTGCGTTATACCGATCCATGGGACCGTGG
CGGAGAGCGTGGAGGGACAGAGCAGTACCCATTCAACCCCAACGGGTCTC
CCAGGGGAGTGGCAGCCCTTTGTTCTGCAGATGGGCGCCATTTGGCTATG
ATGCCGCACCCAGAACGCTCCTGGCTTCGTTGGCAAATGCCATGGATGGC
CCAGGCCGGTTATGATTCAGCAAAGTCTCCATCTGGAAAAGTAAACGCGG
GCCATGAGGAGGTTTACACCCCCTGGTTCCGCCTCTTCCAAAATGCCTTC
CACTTTTCCGTGAAAATGTTCGGAAATGATGTATCATAAGTAAATGAAAC
TGTTAAATATAATAATGAACACGTACTGATAAAA

Coding sequence (CDS) from alignment at KK037249.1:521253..524336-

>rna8657 ID=rna8657|Name=rna8657|organism=Nannochloropsis gaditana|type=CDS|length=2931bp|location=Sequence derived from alignment at KK037249.1:521253..524336- (Nannochloropsis gaditana)
ATGCCAGCCTGGCGCGGCGCAGAGTTCCTGAAGCCAATTATGTTCTCGGC
TGGTCTGGGCAAGGTCCCAGCAGAGGCACTTTTGAAACGCTCGCCCAGTG
TGGGTATGGCGGTGGTGAAGCTGGGTGGGCCCGCGTATCGCGTGGGACTA
GGGGGGGGCGCGGCCTCGAGCAAGGTGGGCGGTGACCCGGAGTTGGATCT
GCAGGCAGTGCAGCGAGGAGACCCGGAGATGGGGAACAAGGTCGGGCGCG
TGGTGCGGGCTTGCGTGGAGATGCAGCACGCCTCCAACTCCCTGGTGCTG
GAGAGCGTGCACGACCAGGGTGCTGGCGGCAATGCCAACGTGCTCAAAGA
ACTGGTCGCTCCGGCGGGCGCCGACGTGTTCCTGGATCGCATCGAAAGAG
GAGACAGTAGCCTGACGCCACTGGAGGTGTGGGGCGCCGAGTATCAAGAG
AGCCAAGGCCTGCTTGTGAACGGCTCACAGGCGCTTGCCGCTCTGAACCG
CATCTGCCGGCGCGAGTCCGCCCCCATGGCGGTGGTTGGCCACGTCACAG
GCAATGGCGCAATCCGCGTCTTCGAGAGTGAGGAGCAATCAGGAGATGGG
CAGGCTGTCCAGGCCTTGGTTGATCTTCCGCTGGAGCCGTTGCTATCCCA
CCGTCCCAAGCGCGTCATCCAGGCGACTAGGGAAAGGACAGGGGCTCAGA
GCTCGAACGCAGACGTCGAGGCGGGGGAGGGGATCGGAGGTCGGCGAGGT
AGAGAGGGAGACAAGACAGCGCTTCAGGATACTCTTTACAAGGTGTTGAG
TGTTGTTTCTGTGGGAAGCAAAGCCTTCCTCACCAACAAAGTGGATCGAA
GCGTCACCGGGCTCGTGGCCGCCCAGCCCTGCGTGGGACCCCTGCACCTG
CCAGTGGGGGACGTGGGGGTGACCGCCTTGTCCTTCTGGGGCGTCGACGG
AGTGGCAACTGCCCTGGGAGAATGCCCTGGGATCGGTATCGCGGGTGGCA
ATGAGGGAATCTCAGCCATGGTGCGCATGGCCGTCGGTGAGGCGCTGACG
AACCTGGTCTCAGCGCCTTTGACAGGGTGGGCGGACATCAAGCTACAGGC
GAACTGGATGTGGCCCGGGCGGGAGGGAGCCAGCGCGGGGCAGCTCTATG
ATGGAGTGGAGGCCCTACGGGGGGTACTGCTCGAGCTAGGCCTGGCTTTG
GACGGGGGCAAAGACTCTCTGTCGATGGCCACGCTCTGTGAGGACGGTAT
TCGCGTGCCCTCTCCGGCGACCGTGGTGGTAACGGCATACGCGCCATGCT
GCGACGTATCCCGAGTCTTGACACCGGATGTGAAGGTGCCCGGTGAGTGC
GACGGCCAGGAAGGTGTCCTCTTGTTCCTGGATGTGAGTGGGAGCGGGCC
GAGGCCGAAGGAGCTGGGGGGGTCGGCCTGGGCGGAGATAAAGAGAATTG
ACGGAGACCAGAGGACGCCAGACATGCGAGACCCCGCTCTGCTCCGTCGA
GCATTCGAGGCTGTGCAAGGTCTCTCAAAAGAGGGGAAGATCCAGGCGTG
TCACGACGTGAGCTCCGGAGGCCTCGTCACAACGGTTCTGGAGATGGCCA
TCAGCGGAGACGCCGGCGCTCGGCTGGTCCTGCCAGCGGGCGATCCGCAT
GATCCCCTGCTCTCGTCCCAGCGTTTCACGGAGGCAAGTCTTTTCAGCGA
AGAGCTCGGGCTGGTGCTGGAGCTCAAAGGACAGGACCTCGCCCTCGTTC
AAAATGATTTGCAAGATCAGGGTATTCCATACAGCACCATCGGCTTTTCT
ACGCCTGAGAGGAAAGTAGAAATCCGAGGAGCCGACGGGCGGATTCTTTT
GAGCGAAGAGACAGAAGCTTTGCATGCCAAATGGTGCGCCATGAGCCTTC
AGCTCGAGAGGCTCCAAGCCAGCCCCGCGTGCATCGAGGCCGAGGAGGCG
GTCTTGTCGAGCCTCCGCCGACCAGTGTGGGCCATCCCGCCCTCTCTGAC
GACCGCGCGTCCGAGCCCGTCGACTCCGAATCGGACGCGTCTCAGAGTAG
GCGTACTGCGAGAGCAAGGCAGCAACGGGGACAGGGAGATGGCAGCCGCG
TTGCACAGCGCTGGGTTCCAGGTGTGGGACCTGACAGTCGCCGACCTGCT
GCAGGGCCAGGTGGACCTCGGCTCCTTCCACGGGCTGGCTTTCGTAGGAG
GCTTCAGTTACGGGGATGCCTTGGGCTCGGCTAGGGGATGGAGAAGTGTG
CTCTTGGGCAATCCGCGCGTGGAGGCGCAGCTGCGTCATTTCTTTGCAAG
ACCCGAGACTTGGAGCCTCGGGCTCTGCAACGGCTGCCAGTTGCTCGTCG
CTCTCGGGATTGTGCCGGACCTTGCTCTTGAGGATCGCCCCAATCCTATC
AACTGCAAGAAACCTCTTGTTTGGCTGGGAGAGAATGATAGCGGGCGATT
TGAGAGTCGCTTCGTGACGGTCAAGGTGGGTCCCTCTCCTGCTGTCCTCC
TGAAAGGACTTGAAGGGCTAGTCATGGGAATCTGGAGTGCACATGCCGAG
GGGAAAATGCATTTTAGCGATGAAACTCTTATGAATCAAATTCTTGACCG
AGGTCTGGCACCAGTGCGTTATACCGATCCATGGGACCGTGGCGGAGAGC
GTGGAGGGACAGAGCAGTACCCATTCAACCCCAACGGGTCTCCCAGGGGA
GTGGCAGCCCTTTGTTCTGCAGATGGGCGCCATTTGGCTATGATGCCGCA
CCCAGAACGCTCCTGGCTTCGTTGGCAAATGCCATGGATGGCCCAGGCCG
GTTATGATTCAGCAAAGTCTCCATCTGGAAAAGTAAACGCGGGCCATGAG
GAGGTTTACACCCCCTGGTTCCGCCTCTTCCAAAATGCCTTCCACTTTTC
CGTGAAAATGTTCGGAAATGATGTATCATAA

Synonyms

Publications