rna8655, rna8655 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8655
Unique Name	rna8655
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2543
Alignment location	KK037249.1:515198..517889 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100052g19.1156.mrna
Orig protein id	gnl\|cribi\|Naga_100052g19.1156
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:515198..517889 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100052g19	gene8388	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22031.1	cds8628	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8655	rna8655-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:515198..517889-
coding sequence from alignment at KK037249.1:515198..517889-

mRNA sequence

>rna8655 ID=rna8655|Name=rna8655|organism=Nannochloropsis gaditana|type=mRNA|length=2543bp
AACTCTTTTTCACCTACTTTCGCCCACATTCAGAAGTTTACCAAAAAATG
CCTTCAAAAATATTCTTTTCGCTGATCAGCGGCGTGGCTTTAGCCAGCGC
GGGGAGCAAGGGCCTCTTGCGTGGAAATACACAAGAAGATTCGTCCCGTC
GTTTGTCGTGGACGAACCCGTTGCTTGGCGCGCACCATGGCGCCCAGCCT
GCGCCTGAGGAAATTTGCGCGCTTAAGGCTGAAGTTATGTCACCGTGCAA
CATGTGGGCTTTCGTGAATGGGCAGTCCTTGGACGCGTCCATGGGCTTCG
GCAACGGACCCACGCACTCATCGATGGCACTTCCCCAAAACACGAGCAGC
GTCACCTTGGTGCTCAAGTCCTTTTGCACGCCCTTCTCATTCCCCGTCTC
TGCCGTTGAGGGATCGCCCGTGCATCCGATGGTAGCCGCCAAATTCGATG
TGTGCGGCACGGATGTCAAGACGGACGAGTCCTGGGTGTGCATCAACCAT
TTTCCTGAAGAGGGCAGCTGGAGCTCCCCCGACTTCGACGACAGCGCGTG
GCCTAACGCTGTGAGGGTCGAGGCCAGCGGGCTCCCTACTGGGTTCACCT
ACATCGCGGGCCCGACCGAAAGCTCAGACGATAGCCCCCATGGGGGTTGG
GAGACCTTCTGTCGCAAGACGGTTTCTCTCGCTGAAGACAGCGAAGAGGG
CGCTGAGCCTCCGCCTGCGCCCCTGCCGGTTGAGCCTGCGCTTCCTGGGC
ACCCCTCTTCGCCGCACGCTTGGATGATGAACATGACCGTGGAGGGGAAC
TGCAGCCTGGTCGACGTCGATATCCATGATCTCAGCACCAACTTTGGCTT
CCTGTTCGGCCTCCTGGAGGAGCACGGTCACCCGCCCGTTGAGTGCGTCC
TCACCGGGCATCGACCCTCTCCCGAGCACAGCCCCACCGACACGACCTGG
CCTTGCGCCCACATCCCGGACCCCTGCCTCTTCCAGTTCGTCTTCACCGG
CGTTCAGGCCTTCCTGACCCCTGAGATCATCATGCAGGCCCTGGAGGACC
CGACCTTCGCCAGCATCTTCGACACCCGCAACTCCTCTTCCAGCGAATTT
TGCCAGGTCCAAAGCGTGACGATTGAGGACCAAGAGACGACGCCGGGGCC
CGATCCCTCCTCCGAAGACGTGGGCGGCAGCACCGTCAACATGCCGCAGC
CTTTGGATAACTCCGAAAACCAAGTTTCTAGCCCCGAGCAGCCCCAGGAC
GTGGACGGGTCCAGCCAGGAGGGTGGCGACGCCTCCTCAAGCACCGTTTC
CTCCAACAATCAAGATATAGTGCCGGCTGAAGAGCCCAATGACGGAAGCG
ACGACTCTTCCGTGTCCATCACGCCCGCCCCCTCCGCGCAGCCAACGCCC
GAACCCTCATCAGAGGAGGGCAACGACTCTTCCGTGTCCATCACGCCCGC
CCCCTCCGCGCAGCCAACGCCCGAACCCACTTCAGAGGGGGTCGACGACT
CTTCCGTGTCCATCACGCCCGCCCCCTCCGCGCAGCCAACGCCCGAACCC
ACTTCAGAGGGGGTCGACGACTCTTCCGTGTCCATCACACCGGCCGACGT
GGAGGAACCTGCCGTCGATTCCCCCTACATCCCCCCCACCCCCGTCGAAT
GCGGGGAGACAGTTACCTTCGAGCTAGGCGTGGATGGTCCCGGCATTTTG
TTCAAGCTGGACTCCGCGAACGAAGGTGATGTTAAGGTGCGAGCCACGAC
CTGCCTGGAGAGCACCAAAGCAGACACTGTCGTCTCTGTCTACGACCAGA
AGCCCTCAGAGGGTGTGGAGCCCATCGCCAGCAACGACGACGACGACACA
TGCGAGGTGAACCCGACCTCCTCCACGGCCAGCACCACCCTGTTGGATGA
CAGCTCCGTGTACATCCATGTGGCCAACAAGGGTGCGTATGCCGGGGCGG
TCTCTCTCAAGGTACATTGCGGGGTCTATGACCGCCGCTAAGCCCTTTTT
TGGGTGTGTGAAGTATAGGAAGTCAGTTGAAATCTATGGTATTGCGACTA
TTTTATGGAATTGTTACATTGAATGCGTCAAGCACAAAAGCAAATCTGGT
TGAAAAAAATGTTGGTGACTTGTCTTACTCAGGATGCATGGTGTGCATGC
CAGAAAATGCAAAGACTATATGAAAAGTGAGAGCGAAATGAATTCTCCAT
TCCGAAAATGGTGGGAACCATTTTAAGTAGAACTCATCGACCAGCTACAT
GGAAAATTTTAAATCATTCGTCAATTTAGATCAAAAGTGAGATAATGAAT
TGTAGGACTTCAAGAATTCCGAGATGTACTGATTCTAGCGCCAGAGGGTG
CGTTAATTGAGGTAAAGATAAAGTGGAACCATTTCTTCGCGACAATGCGA
AACCCTTAGGTCACACATCCAAGCGTGCGGCCCATGTCAATTTCTTGCGG
ATCGTGAGGGCCGTGCCAAAAAGCTAATCGTGGTCTTTGAACTTCTCGTA
CTCCTGTGCACTTGACCTTAACTAATTACTTTCATTAATTCCG

protein sequence of rna8655

>rna8655-protein ID=rna8655-protein|Name=rna8655|organism=Nannochloropsis gaditana|type=polypeptide|length=633bp
MPFCPRMPPQRGNTQEDSSRRLSWTNPLLGAHHGAQPAPEEICALKAEVM
SPCNMWAFVNGQSLDASMGFGNGPTHSSMALPQNTSSVTLVLKSFCTPFS
FPVSAVEGSPVHPMVAAKFDVCGTDVKTDESWVCINHFPEEGSWSSPDFD
DSAWPNAVRVEASGLPTGFTYIAGPTESSDDSPHGGWETFCRKTVSLAED
SEEGAEPPPAPLPVEPALPGHPSSPHAWMMNMTVEGNCSLVDVDIHDLST
NFGFLFGLLEEHGHPPVECVLTGHRPSPEHSPTDTTWPCAHIPDPCLFQF
VFTGVQAFLTPEIIMQALEDPTFASIFDTRNSSSSEFCQVQSVTIEDQET
TPGPDPSSEDVGGSTVNMPQPLDNSENQVSSPEQPQDVDGSSQEGGDASS
STVSSNNQDIVPAEEPNDGSDDSSVSITPAPSAQPTPEPSSEEGNDSSVS
ITPAPSAQPTPEPTSEGVDDSSVSITPAPSAQPTPEPTSEGVDDSSVSIT
PADVEEPAVDSPYIPPTPVECGETVTFELGVDGPGILFKLDSANEGDVKV
RATTCLESTKADTVVSVYDQKPSEGVEPIASNDDDDTCEVNPTSSTASTT
LLDDSSVYIHVANKGAYAGAVSLKVHCGVYDRR

mRNA from alignment at KK037249.1:515198..517889-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8655 ID=rna8655|Name=rna8655|organism=Nannochloropsis gaditana|type=mRNA|length=2692bp|location=Sequence derived from alignment at KK037249.1:515198..517889- (Nannochloropsis gaditana)
GCCCACATTCAGAAGTTTACCAAAAAATGCCTTCAAAAATATTCTTTTCG
CTGATCAGCGGCGTGGCTTTAGCCAGCGCGGGGAGCAAGGGCCTCTTGGT
GAGAAACATGGATGCTTGAAGTGTCTAATCTGTCTCAGAGCATATTTACC
TCATTAGACCACCTGCGTGATCTACAGGTTCTGCACTCCTGATTGTTTGG
TTCATCTTCCCTTCCTCACGAATGCATATGTGCCACTGATGCCATTCTGT
CCTCGCATGCCACCACAGCGTGGAAATACACAAGAAGATTCGTCCCGTCG
TTTGTCGTGGACGAACCCGTTGCTTGGCGCGCACCATGGCGCCCAGCCTG
CGCCTGAGGAAATTTGCGCGCTTAAGGCTGAAGTTATGTCACCGTGCAAC
ATGTGGGCTTTCGTGAATGGGCAGTCCTTGGACGCGTCCATGGGCTTCGG
CAACGGACCCACGCACTCATCGATGGCACTTCCCCAAAACACGAGCAGCG
TCACCTTGGTGCTCAAGTCCTTTTGCACGCCCTTCTCATTCCCCGTCTCT
GCCGTTGAGGGATCGCCCGTGCATCCGATGGTAGCCGCCAAATTCGATGT
GTGCGGCACGGATGTCAAGACGGACGAGTCCTGGGTGTGCATCAACCATT
TTCCTGAAGAGGGCAGCTGGAGCTCCCCCGACTTCGACGACAGCGCGTGG
CCTAACGCTGTGAGGGTCGAGGCCAGCGGGCTCCCTACTGGGTTCACCTA
CATCGCGGGCCCGACCGAAAGCTCAGACGATAGCCCCCATGGGGGTTGGG
AGACCTTCTGTCGCAAGACGGTTTCTCTCGCTGAAGACAGCGAAGAGGGC
GCTGAGCCTCCGCCTGCGCCCCTGCCGGTTGAGCCTGCGCTTCCTGGGCA
CCCCTCTTCGCCGCACGCTTGGATGATGAACATGACCGTGGAGGGGAACT
GCAGCCTGGTCGACGTCGATATCCATGATCTCAGCACCAACTTTGGCTTC
CTGTTCGGCCTCCTGGAGGAGCACGGTCACCCGCCCGTTGAGTGCGTCCT
CACCGGGCATCGACCCTCTCCCGAGCACAGCCCCACCGACACGACCTGGC
CTTGCGCCCACATCCCGGACCCCTGCCTCTTCCAGTTCGTCTTCACCGGC
GTTCAGGCCTTCCTGACCCCTGAGATCATCATGCAGGCCCTGGAGGACCC
GACCTTCGCCAGCATCTTCGACACCCGCAACTCCTCTTCCAGCGAATTTT
GCCAGGTCCAAAGCGTGACGATTGAGGACCAAGAGACGACGCCGGGGCCC
GATCCCTCCTCCGAAGACGTGGGCGGCAGCACCGTCAACATGCCGCAGCC
TTTGGATAACTCCGAAAACCAAGTTTCTAGCCCCGAGCAGCCCCAGGACG
TGGACGGGTCCAGCCAGGAGGGTGGCGACGCCTCCTCAAGCACCGTTTCC
TCCAACAATCAAGATATAGTGCCGGCTGAAGAGCCCAATGACGGAAGCGA
CGACTCTTCCGTGTCCATCACGCCCGCCCCCTCCGCGCAGCCAACGCCCG
AACCCTCATCAGAGGAGGGCAACGACTCTTCCGTGTCCATCACGCCCGCC
CCCTCCGCGCAGCCAACGCCCGAACCCACTTCAGAGGGGGTCGACGACTC
TTCCGTGTCCATCACGCCCGCCCCCTCCGCGCAGCCAACGCCCGAACCCA
CTTCAGAGGGGGTCGACGACTCTTCCGTGTCCATCACACCGGCCGACGTG
GAGGAACCTGCCGTCGATTCCCCCTACATCCCCCCCACCCCCGTCGAATG
CGGGGAGACAGTTACCTTCGAGCTAGGCGTGGATGGTCCCGGCATTTTGT
TCAAGCTGGACTCCGCGAACGAAGGTGATGTTAAGGTGCGAGCCACGACC
TGCCTGGAGAGCACCAAAGCAGACACTGTCGTCTCTGTCTACGACCAGAA
GCCCTCAGAGGGTGTGGAGCCCATCGCCAGCAACGACGACGACGACACAT
GCGAGGTGAACCCGACCTCCTCCACGGCCAGCACCACCCTGTTGGATGAC
AGCTCCGTGTACATCCATGTGGCCAACAAGGGTGCGTATGCCGGGGCGGT
CTCTCTCAAGGTACATTGCGGGGTCTATGACCGCCGCTAAGCCCTTTTTT
GGGTGTGTGAAGTATAGGAAGTCAGTTGAAATCTATGGTATTGCGACTAT
TTTATGGAATTGTTACATTGAATGCGTCAAGCACAAAAGCAAATCTGGTT
GAAAAAAATGTTGGTGACTTGTCTTACTCAGGATGCATGGTGTGCATGCC
AGAAAATGCAAAGACTATATGAAAAGTGAGAGCGAAATGAATTCTCCATT
CCGAAAATGGTGGGAACCATTTTAAGTAGAACTCATCGACCAGCTACATG
GAAAATTTTAAATCATTCGTCAATTTAGATCAAAAGTGAGATAATGAATT
GTAGGACTTCAAGAATTCCGAGATGTACTGATTCTAGCGCCAGAGGGTGC
GTTAATTGAGGTAAAGATAAAGTGGAACCATTTCTTCGCGACAATGCGAA
ACCCTTAGGTCACACATCCAAGCGTGCGGCCCATGTCAATTTCTTGCGGA
TCGTGAGGGCCGTGCCAAAAAGCTAATCGTGGTCTTTGAACTTCTCGTAC
TCCTGTGCACTTGACCTTAACTAATTACTTTCATTAATTCCG

Coding sequence (CDS) from alignment at KK037249.1:515198..517889-

>rna8655 ID=rna8655|Name=rna8655|organism=Nannochloropsis gaditana|type=CDS|length=1902bp|location=Sequence derived from alignment at KK037249.1:515198..517889- (Nannochloropsis gaditana)
ATGCCATTCTGTCCTCGCATGCCACCACAGCGTGGAAATACACAAGAAGA
TTCGTCCCGTCGTTTGTCGTGGACGAACCCGTTGCTTGGCGCGCACCATG
GCGCCCAGCCTGCGCCTGAGGAAATTTGCGCGCTTAAGGCTGAAGTTATG
TCACCGTGCAACATGTGGGCTTTCGTGAATGGGCAGTCCTTGGACGCGTC
CATGGGCTTCGGCAACGGACCCACGCACTCATCGATGGCACTTCCCCAAA
ACACGAGCAGCGTCACCTTGGTGCTCAAGTCCTTTTGCACGCCCTTCTCA
TTCCCCGTCTCTGCCGTTGAGGGATCGCCCGTGCATCCGATGGTAGCCGC
CAAATTCGATGTGTGCGGCACGGATGTCAAGACGGACGAGTCCTGGGTGT
GCATCAACCATTTTCCTGAAGAGGGCAGCTGGAGCTCCCCCGACTTCGAC
GACAGCGCGTGGCCTAACGCTGTGAGGGTCGAGGCCAGCGGGCTCCCTAC
TGGGTTCACCTACATCGCGGGCCCGACCGAAAGCTCAGACGATAGCCCCC
ATGGGGGTTGGGAGACCTTCTGTCGCAAGACGGTTTCTCTCGCTGAAGAC
AGCGAAGAGGGCGCTGAGCCTCCGCCTGCGCCCCTGCCGGTTGAGCCTGC
GCTTCCTGGGCACCCCTCTTCGCCGCACGCTTGGATGATGAACATGACCG
TGGAGGGGAACTGCAGCCTGGTCGACGTCGATATCCATGATCTCAGCACC
AACTTTGGCTTCCTGTTCGGCCTCCTGGAGGAGCACGGTCACCCGCCCGT
TGAGTGCGTCCTCACCGGGCATCGACCCTCTCCCGAGCACAGCCCCACCG
ACACGACCTGGCCTTGCGCCCACATCCCGGACCCCTGCCTCTTCCAGTTC
GTCTTCACCGGCGTTCAGGCCTTCCTGACCCCTGAGATCATCATGCAGGC
CCTGGAGGACCCGACCTTCGCCAGCATCTTCGACACCCGCAACTCCTCTT
CCAGCGAATTTTGCCAGGTCCAAAGCGTGACGATTGAGGACCAAGAGACG
ACGCCGGGGCCCGATCCCTCCTCCGAAGACGTGGGCGGCAGCACCGTCAA
CATGCCGCAGCCTTTGGATAACTCCGAAAACCAAGTTTCTAGCCCCGAGC
AGCCCCAGGACGTGGACGGGTCCAGCCAGGAGGGTGGCGACGCCTCCTCA
AGCACCGTTTCCTCCAACAATCAAGATATAGTGCCGGCTGAAGAGCCCAA
TGACGGAAGCGACGACTCTTCCGTGTCCATCACGCCCGCCCCCTCCGCGC
AGCCAACGCCCGAACCCTCATCAGAGGAGGGCAACGACTCTTCCGTGTCC
ATCACGCCCGCCCCCTCCGCGCAGCCAACGCCCGAACCCACTTCAGAGGG
GGTCGACGACTCTTCCGTGTCCATCACGCCCGCCCCCTCCGCGCAGCCAA
CGCCCGAACCCACTTCAGAGGGGGTCGACGACTCTTCCGTGTCCATCACA
CCGGCCGACGTGGAGGAACCTGCCGTCGATTCCCCCTACATCCCCCCCAC
CCCCGTCGAATGCGGGGAGACAGTTACCTTCGAGCTAGGCGTGGATGGTC
CCGGCATTTTGTTCAAGCTGGACTCCGCGAACGAAGGTGATGTTAAGGTG
CGAGCCACGACCTGCCTGGAGAGCACCAAAGCAGACACTGTCGTCTCTGT
CTACGACCAGAAGCCCTCAGAGGGTGTGGAGCCCATCGCCAGCAACGACG
ACGACGACACATGCGAGGTGAACCCGACCTCCTCCACGGCCAGCACCACC
CTGTTGGATGACAGCTCCGTGTACATCCATGTGGCCAACAAGGGTGCGTA
TGCCGGGGCGGTCTCTCTCAAGGTACATTGCGGGGTCTATGACCGCCGCT
AA

Synonyms

Publications