rna865, rna865 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna865
Unique Name	rna865
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2285
Alignment location	CM002456.1:597647..599351 -

Link to JBrowse

Properties


Property Name	Value
Product	kynureninase
Orig transcript id	gnl\|cribi\|Naga_100017g57.361.mrna
Orig protein id	gnl\|cribi\|Naga_100017g57.361
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:597647..599351 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100017g57	gene828	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29863.1	cds865	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna865	rna865-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:597647..599351-
coding sequence from alignment at CM002456.1:597647..599351-

mRNA sequence

>rna865 ID=rna865|Name=rna865|organism=Nannochloropsis gaditana|type=mRNA|length=2285bp
GCACGTCTTTCTCTGTAGATTTTATCATCTACTGCGACACTTACGGTGCC
TGATACTGAATCATCGGAATTTAAACCTTATATCTGTCACGTTCGGCATG
GTTTCTTCGTTCTGGTCTTCACTCCGCTGCTTTTCCAGCCCGGGGCATCT
TTCTGGTGTATAGAGCAGGGCAATGACATGACATGGTTTCTATTGTTTCC
CGCCAGGTTTGACCGAAGTAAGGCTCATACTTACTGTGCATTCTCATCAT
CGTCGTACTAGATAGGGCGGTTGGGCATGTCTTTTGCTGTCCCTGCAGCA
AGCATGTCGTCAACGCCTGCAGCCCCTGCTGCTGACAACAGTGTGATCAC
TCTGCGCGGGTCTACGGACATAGTGGTTGAATTCTTCGAGCACGCCATCA
CCTGCATTCTCTATCAGCGCGGCATATACCCTCCTGAGGACTTCGAACGC
AAGACCAAGTATGGCCTTGCGTTACACGTCGCCAGAGAGGAGGGCTTAGT
AACGTACTTAAAAAATGTACTTGAACAACTTCGGCAGTGGCTGACCTCCA
GCAACGTGCAAAAGCTGGTGGTTGTCGTGACGGGCATGGAGTCGCAGGCC
GTGCTCGAACGGTGGGTCTTCAGTGTCGATACCGCCCAGGAGGCAGCGAC
GAATCCACAAGGGTACCAGGCCCAAAAATCACAAAAGGAGATCACGAGTG
AAATCGCGGCGATCATCCGACAAATAACCTGCTCCGTGTCGTTCATGCCC
TTGCTCGCTGAGCGCTGCTCGTTCGACCTGCTCGTGTATACGGACAAGGA
CGTGTTGGTGCCTGCCACCTGGGAGGATTCGGACCCGCGGCTCATCCAGC
AAGCCGAGGAGGTCCGCTTGCGTTCGGTGAACACCAAGGTGCACAAGGTG
GATACTATGGTGGCGTATCGCATGGAACCAGCGGGGCAGGGCTGAGGAAT
GGGAGCCGGAAAAAGCTTCCAAAAAGTACAAAAATCATACCTTAAGGGTT
GCTGTCGTGGCTGCTGATTATGAAATACATGAAGTCTCACTGTATTGCAA
GAGTTTGGTCGGTAGATGAGAAACGCGACAGCAAAAAATATGTACAAAGG
GATCAGGAAGGCGAGGCTAACGAGGTAAGCTTCGAGGGTCTAGGTGCACG
TTTAGGAATTTTTGTCGCGAAGGAAGGAGTGAGTTTTGAGGTTTAAGTCA
AAGTTTCAGAGACATCAGTTACCCTTGTGCTTACGAAACGTATGTGAGCA
TGCATTTTTTCTTTTTCTGCCAGGAAGAGTGGGCAAATTATACATATATT
GTCGAAATGTTGGTGGTACATTCGTTCAAAAAGCTCGCCGTGATGTTTGA
CTTTAGCTCCAATCCTGCGGGTGAACCGCGGCAAATAGCGGCCCCCGTAT
CCCCTCGTGACAACTTAGCCCTTCTCCCTCGTCTCCCGGGGTGAGTCTCG
AGCTTCTTCCAACACGTCCTTTAAGATCATCACGAAGCGCCACACGTCCA
CAAAGCGTGTGTATAAGGGGGAAGGTGCAACGCGGATGACGTTGGGATGC
CGCACATCGCCCATGACCCCACGGGCCTCAAGCGCCTCCAGGACCTGTGC
AGCCTCCAGCCTCTCCACCTTGAACGTCAGGGACAGCTGGCACCCCCTTT
CTTCGGACGCCGCTGGCGTAATGATCTGCACTGTGTCTGACAACGTTTGC
TCGAGCAAGAGCTGCAGGTATCCTGTCAGGAGGACGGACTTCTTCCGCAA
CGCAGGCATCCCCCCGGCGGCCTTGAAGAGTCTGAGGGCGCTTTCCAAGC
ATGCGAGCATCAGCGGGGAGGGAGTCGAGAGCTGGAAACCCAGGGCACCG
GGAGCGGGCTCAAACATGGCTTCATTGAACGTAAAGCGCGCGGCTTTGGC
TTGCCCCCACCACCCAGCCAGGCGCGGCAGAGGTGGCGTTCTCTTTGTAT
GTTTCTCGTGGACATACACCCCCCCTACTGCTCCAGGCCCCGCGCACATG
TACTTGTAATGGCACCAACATGCGAAATCAACACCCCACTCATGGAGATG
TAACTCAACGTTTCCGATCGCATGGGCCAAGTCAAAGCCAACCAGGATTC
CTTGAGCGTGGGCTGCCGCCGTGATTCCCGACATGTCAAAACATTGTCCA
GAGGCGAAATGCAAGCCACTGAGGAAGAGGAGAGCGGTATCTTTTCCATG
ATCTTTGAGAAAGGTAATAATGTCAGATGCCCGCCAAGTGGACTCGCCAG
GCCGGCGTCGGATAATGAGAAGGAAGTCGTCCTCA

protein sequence of rna865

>rna865-protein ID=rna865-protein|Name=rna865|organism=Nannochloropsis gaditana|type=polypeptide|length=474bp
MEVTRTYERDLAKLQQEVGIHNLADKSLANALDERNICFRSQFIIPLNGS
AIYLCTNSLGLQPRRLRDDVGEVLNKWGQEGVTSWFRGRKPFANVDESVL
DELASIIGAKDSHEVVAMNSLSLNIHLMLATFYRPTPIRRKIIVEENAFP
SDIQVLRSHLALVYRQANEKEQARGKNKGDGEHEDEDDFLLIIRRRPGES
TWRASDIITFLKDHGKDTALLFLSGLHFASGQCFDMSGITAAAHAQGILV
GFDLAHAIGNVELHLHEWGVDFACWCHYKYMCAGPGAVGGVYVHEKHTKR
TPPLPRLAGWWGQAKAARFTFNEAMFEPAPGALGFQLSTPSPLMLACLES
ALRLFKAAGGMPALRKKSVLLTGYLQLLLEQTLSDTVQIITPAASEERGC
QLSLTFKVERLEAAQVLEALEARGVMGDVRHPNVIRVAPSPLYTRFVDVW
RFVMILKDVLEEARDSPRETREKG

mRNA from alignment at CM002456.1:597647..599351-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna865 ID=rna865|Name=rna865|organism=Nannochloropsis gaditana|type=mRNA|length=1705bp|location=Sequence derived from alignment at CM002456.1:597647..599351- (Nannochloropsis gaditana)
CTTCTTTTTGGTTCCTCCCTAGAAAGCAGCATATTGTAAGATACATGTTG
ACCGTATCTTACAGAGCTCGTTGAACCAGGGACATCGGAAAGAATCCTTG
ATGGAGGTCACGAGGACGTACGAGCGTGATTTGGCCAAGTTGCAGCAGGA
GGTTGGGATTCACAATCTGGCCGACAAAAGCCTGGCAAACGCTTTAGATG
AGAGAAACATCTGTTTCAGAAGCCAGTTTATCATCCCTTTGAACGGCTCT
GCAATCTATTTGTGTACTAACAGCTTGGGGCTTCAACCCCGGCGTCTCCG
AGACGACGTCGGGGAGGTCTTAAATAAATGGGGACAAGAGGGTGTGACTT
CTTGGTTTCGAGGGCGCAAGCCTTTCGCCAATGTAGATGAATCAGTTCTT
GATGAATTGGCATCAATAATTGGAGCAAAGGATTCACATGAAGTTGTGGC
CATGAACAGCCTGAGCCTCAACATCCACCTTATGCTTGCTACATTCTACC
GCCCCACCCCAATTCGACGCAAAATAATTGTGGAGGAGAATGCCTTTCCC
TCGGACATCCAGGTGTTGCGGTCCCATCTTGCGCTTGTATATCGGCAAGC
TAACGAAAAAGAACAAGCGCGTGGAAAAAACAAGGGAGATGGCGAACATG
AAGATGAGGACGACTTCCTTCTCATTATCCGACGCCGGCCTGGCGAGTCC
ACTTGGCGGGCATCTGACATTATTACCTTTCTCAAAGATCATGGAAAAGA
TACCGCTCTCCTCTTCCTCAGTGGCTTGCATTTCGCCTCTGGACAATGTT
TTGACATGTCGGGAATCACGGCGGCAGCCCACGCTCAAGGAATCCTGGTT
GGCTTTGACTTGGCCCATGCGATCGGAAACGTTGAGTTACATCTCCATGA
GTGGGGTGTTGATTTCGCATGTTGGTGCCATTACAAGTACATGTGCGCGG
GGCCTGGAGCAGTAGGGGGGGTGTATGTCCACGAGAAACATACAAAGAGA
ACGCCACCTCTGCCGCGCCTGGCTGGGTGGTGGGGGCAAGCCAAAGCCGC
GCGCTTTACGTTCAATGAAGCCATGTTTGAGCCCGCTCCCGGTGCCCTGG
GTTTCCAGCTCTCGACTCCCTCCCCGCTGATGCTCGCATGCTTGGAAAGC
GCCCTCAGACTCTTCAAGGCCGCCGGGGGGATGCCTGCGTTGCGGAAGAA
GTCCGTCCTCCTGACAGGATACCTGCAGCTCTTGCTCGAGCAAACGTTGT
CAGACACAGTGCAGATCATTACGCCAGCGGCGTCCGAAGAAAGGGGGTGC
CAGCTGTCCCTGACGTTCAAGGTGGAGAGGCTGGAGGCTGCACAGGTCCT
GGAGGCGCTTGAGGCCCGTGGGGTCATGGGCGATGTGCGGCATCCCAACG
TCATCCGCGTTGCACCTTCCCCCTTATACACACGCTTTGTGGACGTGTGG
CGCTTCGTGATGATCTTAAAGGACGTGTTGGAAGAAGCTCGAGACTCACC
CCGGGAGACGAGGGAGAAGGGCTAAGTTGTCACGAGGGGATACGGGGGCC
GCTATTTGCCGCGGTTCACCCGCAGGATTGGAGCTAAAGTCAAACATCAC
GGCGAGCTTTTTGAACGAATGTACCACCAACATTTCGACAATATATGTAT
AATTTGCCCACTCTTCCTGGCAGAAAAAGAAAAAATGCATGCTCACATAC
GTTTC

Coding sequence (CDS) from alignment at CM002456.1:597647..599351-

>rna865 ID=rna865|Name=rna865|organism=Nannochloropsis gaditana|type=CDS|length=1425bp|location=Sequence derived from alignment at CM002456.1:597647..599351- (Nannochloropsis gaditana)
ATGGAGGTCACGAGGACGTACGAGCGTGATTTGGCCAAGTTGCAGCAGGA
GGTTGGGATTCACAATCTGGCCGACAAAAGCCTGGCAAACGCTTTAGATG
AGAGAAACATCTGTTTCAGAAGCCAGTTTATCATCCCTTTGAACGGCTCT
GCAATCTATTTGTGTACTAACAGCTTGGGGCTTCAACCCCGGCGTCTCCG
AGACGACGTCGGGGAGGTCTTAAATAAATGGGGACAAGAGGGTGTGACTT
CTTGGTTTCGAGGGCGCAAGCCTTTCGCCAATGTAGATGAATCAGTTCTT
GATGAATTGGCATCAATAATTGGAGCAAAGGATTCACATGAAGTTGTGGC
CATGAACAGCCTGAGCCTCAACATCCACCTTATGCTTGCTACATTCTACC
GCCCCACCCCAATTCGACGCAAAATAATTGTGGAGGAGAATGCCTTTCCC
TCGGACATCCAGGTGTTGCGGTCCCATCTTGCGCTTGTATATCGGCAAGC
TAACGAAAAAGAACAAGCGCGTGGAAAAAACAAGGGAGATGGCGAACATG
AAGATGAGGACGACTTCCTTCTCATTATCCGACGCCGGCCTGGCGAGTCC
ACTTGGCGGGCATCTGACATTATTACCTTTCTCAAAGATCATGGAAAAGA
TACCGCTCTCCTCTTCCTCAGTGGCTTGCATTTCGCCTCTGGACAATGTT
TTGACATGTCGGGAATCACGGCGGCAGCCCACGCTCAAGGAATCCTGGTT
GGCTTTGACTTGGCCCATGCGATCGGAAACGTTGAGTTACATCTCCATGA
GTGGGGTGTTGATTTCGCATGTTGGTGCCATTACAAGTACATGTGCGCGG
GGCCTGGAGCAGTAGGGGGGGTGTATGTCCACGAGAAACATACAAAGAGA
ACGCCACCTCTGCCGCGCCTGGCTGGGTGGTGGGGGCAAGCCAAAGCCGC
GCGCTTTACGTTCAATGAAGCCATGTTTGAGCCCGCTCCCGGTGCCCTGG
GTTTCCAGCTCTCGACTCCCTCCCCGCTGATGCTCGCATGCTTGGAAAGC
GCCCTCAGACTCTTCAAGGCCGCCGGGGGGATGCCTGCGTTGCGGAAGAA
GTCCGTCCTCCTGACAGGATACCTGCAGCTCTTGCTCGAGCAAACGTTGT
CAGACACAGTGCAGATCATTACGCCAGCGGCGTCCGAAGAAAGGGGGTGC
CAGCTGTCCCTGACGTTCAAGGTGGAGAGGCTGGAGGCTGCACAGGTCCT
GGAGGCGCTTGAGGCCCGTGGGGTCATGGGCGATGTGCGGCATCCCAACG
TCATCCGCGTTGCACCTTCCCCCTTATACACACGCTTTGTGGACGTGTGG
CGCTTCGTGATGATCTTAAAGGACGTGTTGGAAGAAGCTCGAGACTCACC
CCGGGAGACGAGGGAGAAGGGCTAA

Synonyms

Publications