rna8637, rna8637 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8637
Unique Name	rna8637
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2002
Alignment location	KK037249.1:481399..483542 +

Link to JBrowse

Properties


Property Name	Value
Product	sigma 54 modulation protein ribosomal protein s30ea
Orig transcript id	gnl\|cribi\|Naga_100244g11.1330.mrna
Orig protein id	gnl\|cribi\|Naga_100244g11.1330
Gene	rps22
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:481399..483542 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
rps22	gene8372	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8637	rna8637-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22065.1	cds8610	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:481399..483542+
coding sequence from alignment at KK037249.1:481399..483542+

mRNA sequence

>rna8637 ID=rna8637|Name=rna8637|organism=Nannochloropsis gaditana|type=mRNA|length=2002bp
GCGCCGCATATATTGTGCAAAGGAGGCACCAAAGGCATGGCCCATACTTC
GTGTACAATTTGAACCTATCGACCGTTCAACCGTATCCCTGCACGCCCTG
ATTCGTCCCGCGCTGAGGCCGTTGAAGCGTTCCTCCATCTGGAATCAAGA
GCCTTGCAATAAACGGCCACTTTTCCAATTTGCTTCCGCTTTGTGTGGCT
TTGGCCTTGTGCTCGATGTCCATGTCGTCGCTTTAGTCACTTCTGCGTGC
TCACATGTTTCACGAACGCCTTTTCACAAGATTGACTGCAGATCTACCTT
CCTAAAGCTAATAATAACAATGGAGAGAAGCCCCAACGGACGCGTGCCTC
TGAGCTGGAGACATGTACAACAATTTGAGACGAGATCCCCGAAAAGCATA
CAAGCCGCCCTACTACGAGGAGAGGATACGCTCTCCACGCACTCCGTGGC
GAGTCGCCTTTCCAACGCAAAAAGCTCTTACTCCGCTACCACGTTCCAGA
GCTTCGCCACATCCAATTACTCCGGGTTCTCTGCAGCAGGTGATTTGAGC
AGGAAGATGAAAAATAAAAAACATCACGTGCATCCGAGCGAGCTAGACCC
TACCGTGGCTTATGACGTAGAGTGGGTACACGACGAATTGGCTCTATCCT
GTATGGTGTGCATGGCCGAATTCTCCCCTCTAATGCGCCGAAAGCACCAC
TGCCGCGCCTGCGGGCGTGTGGTGTGCTCAGGATGCTCCAGTGCCCGTGT
CCTGGTTCTAGGTCTGCGAGGCCTCCAAAAGGCCTGCACGGATTGTGTGC
GCGGAGCGGAGAAATTGAGGGCCTGTGAGAGCATCAGCGAGGACTCCGAG
GGAGGTGTCCGGCTGACAGAAGAGCAGGAGGAAAACGACGCTACCATGGA
AGGCTTGAAAAAGAACGAGATGACGAGGGAAACGGAACGCAGCCCGGGCC
GCGTGTGTGGCAGCAACAGCTCGACCCACGTGGAACGCAAAGTAGAAGGC
GACAAACAGGAGGAGCGACAGCAGGCTCTAGAAAATGACGACGAGCCCTT
CCCGCAACAAGCGGGCAAGAAGAAAAAGCAGCGATCAAAAGACAAGACTT
TCTCCACGGCGGGCATCGGTCTCCTGGCCGTGGGGTGCACAGCCCTGGCG
ATAGGCTCAGCACTAGCTATGAGCCCCAAACTGCTCTCCGGTATCATGGG
CCGCTTTAAGAGATAAAGGCAAACAACAGGGCCAGAGGCTACCTGCGAAA
GAAACACAGCGAAAGTAAAAAGAAGGATGGATGGAGAAGGGGGAGGGAGA
GGGAGGGAAAAAGAGTCGGGAAGAACGTTGGTGAAGGCGCGGTTGCCTCC
AAATTGCGTATACTTGTCTTTTTAGAAGAAATGAAATGACAACTTGGCGC
GTTCAGTACATGTCTGTAATTTCATATTTAGAGATGTCGCAGAATCGGCG
GTCTGTCCGTAGATGCACTCACTGGGACATGCAGCCTCCTGGAGATACCA
TAACGACATTTAAAATGAGAGATGCTTTTCTACGGGTGACAATCGCGGCT
GACATGATGCGAAAAGAAGAGGAGGCGGAGAAACAGACTAGTTCTCGCAA
AGAAATCCAGGATTGCGCAGCAAATGTGGCCTGAGGGACCCACTTTGCAT
GGACCGGGGCGTCATAAGCCCCGAGGCCCCGCCTGGATTGTCCTCATTGT
AGGACCAACAAATAAATCGTCACCCGTGCGAGTACGTGTTCAGATGACTC
GACATCAGATTCACCCCAACGCTGGGTACGAGAGACGATGAACATGCCTA
CAACAAATGGGCCATTTCGGATACCAAAGCATAAATTCGTGCAGAGAGCT
TGTGCATAATTGAAGCGAGGAGAGAAAAGATGGGAAAGATTACGATTGGA
AAAGGAAATCCAAGGTACACTATGTCAAGGTGCTGGGCCGGTGAAAAGCA
GCCACACAAGCTTTATGCAAAGCAAGCATTAAACTGTCGGTTTGAATTTC
TT

protein sequence of rna8637

>rna8637-protein ID=rna8637-protein|Name=rna8637|organism=Nannochloropsis gaditana|type=polypeptide|length=343bp
MWREFACHRQENLFASISVGLRLFLLQQVLCWNSWTSPSSAPNRRVNSCF
LTSPFCFLPSSVVLKQNIMQMTKGLWFAAAAATTLILKADAFLPLQPATK
YSSHVLPVHLAALTPTSLQPRTGAMRPLTASGGDGNGGETTYKVQVTGNV
EVTPAMRDYVEKKLGKVLVKMPVHDAINKVDVHLSVVNLAHAAKHSHTVE
ATLFMKGGQVLRASEETDYMYASIDLVSHRITRLLRKFKDRKIGKRKEVN
FEEDGESEMESLGLTGAGAEGGEGGFQDPAKGVDMRVVKRKQFDMPAMST
ADAIVCLEYIGHDFYVFRNEDSGEINVVYKRKLGGVGVIEPRA

mRNA from alignment at KK037249.1:481399..483542+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8637 ID=rna8637|Name=rna8637|organism=Nannochloropsis gaditana|type=mRNA|length=2144bp|location=Sequence derived from alignment at KK037249.1:481399..483542+ (Nannochloropsis gaditana)
GGGGAACTGCGTCTTGTCGTTTCATTGTCTGCTGAGGTCAATTTCAGAGT
CTTTGACTGTTTATTGATTAATGTGGAGGGAATTTGCGTGTCATAGACAG
GAAAACCTTTTCGCTTCTATTTCTGTTGGCCTTCGCTTGTTCCTTCTTCA
ACAAGTCCTCTGTTGGAACTCGTGGACGTCTCCGTCCTCTGCCCCCAATA
GACGCGTGAACTCGTGCTTTCTGACCTCACCATTCTGTTTTCTGCCCTCT
TCTGTCGTTTTAAAACAGAATATCATGCAGATGACGAAAGGGCTTTGGTT
TGCGGCGGCAGCTGCGACCACATTAATTCTGAAGGCGGACGCTTTCTTGC
CGTTGCAGCCTGCGACAAAATACAGTAGCCATGTCCTACCAGTACACCTC
GCAGCTCTGACACCAACATCACTGCAGCCACGAACCGGAGCCATGCGCCC
CCTGACAGCTAGCGGGGGCGATGGCAATGGCGGAGAAAGTGAGTATGGAA
TTGATATGTATTGAGAAGCATGTCTGTTGAGATAGGAAGAGTATGTATCC
TGGATACGACTTTTCTCTAGCGTCTATGCGTTTGTGAAGGGCTCATCTGC
TAGTGTCATCACGCAAGTTTCTCCTAAGttttcctcacctccctctccga
aCAGCCACCTACAAGGTCCAGGTCACGGGGAACGTTGAGGTGACGCCCGC
GATGAGGGATTACGTTGAGAAGAAGCTAGGCAAGGTGCTGGTGAAAATGC
CCGTGCACGACGCCATCAACAAGGTCGACGTCCATTTGTCCGTGGTGAAT
CTGGCGCACGCGGCGAAACACTCGCACACGGTGGAGGCCACGCTCTTCAT
GAAGGGCGGTCAGGTGCTCcgggcctcggaggagacggacTACATGTACG
CCTCCATCGACCTGGTCTCGCACCGTATTACCAGGCTGCTGCGCAAGTTC
AAGGATCGCAAGATCGGGAAGCGGAAAGAGGTGAActtcgaggaggacgg
cgagtcCGAGATGGAGAGCCTGGGCttgacgggggcgggggcggaggggg
gggagggcggcttcCAAGACCCGGCCAAGGGGGTGGACATGAGGGTGGTG
AAGCGGAAGCAGTTCGATATGCCGGCCATGTCGGTAAGCGGGCGgtgcgg
tggaggcggtAGAACACTGTGAAGGGCCTGTCTCTCTTGCCTAGTGCGCC
GTGCCTAACAGTCCCTCCTgtctcgctttccttccccagaCCGCGGACGC
CATTGTCTGCCTCGAGTACATCGGCCATGATTTCTACGTCTTCCGCAACG
AGGACTCGGGGGAGATCAATGTCGTCTACAAGCGCAAGCTGGGCGGCGTT
GGCGTGATCGAGCCCCGCGCATGAGGGGGGGACTCGAGGGCTTGGGAGAG
GAGTGCGgccggggaaagaggggttATAAAGTGTGGGAGCGATGCGATGG
AaagcgatggagaggggaggagcaaggatGGGAATGCGGGGGAGGCAGAA
AAAGGggcgagggtggagggcgagggccgtGGCCGGGCTAGAGACGGGGG
TCCTTTGACTCCTTTGGAGGGGCTTTGAACGCCACCTTCGGTGAACGCAC
GACTCTCCACATGAAGTCATGAAGACACCCCCTGTCGCCTCGCAACAGCT
TTCCTGTGGGTgggcgcaggcggggcaCGCCTGGTTGGAGgccgaggtcg
agggggtTGCGCAGGCTACAGAGGGCGATAGATAGAtaggtaggaaggaa
ggaagtgggggggaagtgagatggagatagggaggaaggggataaGCAGG
CGAAAGAAGGGGCgatgcggggggaggggaggacgtaGCAGATGGTGTAT
ccgggtgggagaggcggctTGCTTTGAGGTTAGGAAGGGAGTCGAGCGCG
GACAGGAGGGTGTATAGCAGACAAAGTGGGCGGGAAAAGCAAACGCGAGC
ATTCGTTTCTGAACCGGGCGGTCTGCGAGAGGAATATAGGAATAAATGAA
CAAGGGAATAAATAATTAAGGAACAAAGGAATAAAGGAATACAGGAATac
aggaatggaggaaatgAAAGGAATAGCAGGAATGTCgatgcccttcctcc
cttaccaCGAGCCACTCAACACAGTTTCGTTCGAAAGTTGCGCC

Coding sequence (CDS) from alignment at KK037249.1:481399..483542+

>rna8637 ID=rna8637|Name=rna8637|organism=Nannochloropsis gaditana|type=CDS|length=3096bp|location=Sequence derived from alignment at KK037249.1:481399..483542+ (Nannochloropsis gaditana)
ATGTGGAGGGAATTTGCGTGTCATAGACAGGAAAACCTTTTCGCTTCTAT
TTCTGTTGGCCTTCGCTTGTTCCTTCTTCAACAAGTCCTCTGTTGGAACT
CGTGGACGTCTCCGTCCTCTGCCCCCAATAGACGCGTGAACTCGTGCTTT
CTGACCTCACCATTCTGTTTTCTGCCCTCTTCTGTCGTTTTAAAACAGAA
TATCATGCAGATGACGAAAGGGCTTTGGTTTGCGGCGGCAGCTGCGACCA
CATTAATTCTGAAGGCGGACGCTTTCTTGCCGTTGCAGCCTGCGACAAAA
TACAGTAGCCATGTCCTACCAGTACACCTCGCAGCTCTGACACCAACATC
ACTGCAGCCACGAACCGGAGCCATGCGCCCCCTGACAGCTAGCGGGGGCG
ATGGCAATGGCGGAGAAACCACCTACAAGGTCCAGGTCACGGGGAACGTT
GAGGTGACGCCCGCGATGAGGGATTACGTTGAGAAGAAGCTAGGCAAGGT
GCTGGTGAAAATGCCCGTGCACGACGCCATCAACAAGGTCGACGTCCATT
TGTCCGTGGTGAATCTGGCGCACGCGGCGAAACACTCGCACACGGTGGAG
GCCACGCTCTTCATGAAGGGCGGTCAGGTGCTCcgggcctcggaggagac
ggacTACATGTACGCCTCCATCGACCTGGTCTCGCACCGTATTACCAGGC
TGCTGCGCAAGTTCAAGGATCGCAAGATCGGGAAGCGGAAAGAGGTGAAc
ttcgaggaggacggcgagtcCGAGATGGAGAGCCTGGGCttgacgggggc
gggggcggaggggggggagggcggcttcCAAGACCCGGCCAAGGGGGTGG
ACATGAGGGTGGTGAAGCGGAAGCAGTTCGATATGCCGGCCATGTCGaCC
GCGGACGCCATTGTCTGCCTCGAGTACATCGGCCATGATTTCTACGTCTT
CCGCAACGAGGACTCGGGGGAGATCAATGTCGTCTACAAGCGCAAGCTGG
GCGGCGTTGGCGTGATCGAGCCCCGCGCATGAATGTGGAGGGAATTTGCG
TGTCATAGACAGGAAAACCTTTTCGCTTCTATTTCTGTTGGCCTTCGCTT
GTTCCTTCTTCAACAAGTCCTCTGTTGGAACTCGTGGACGTCTCCGTCCT
CTGCCCCCAATAGACGCGTGAACTCGTGCTTTCTGACCTCACCATTCTGT
TTTCTGCCCTCTTCTGTCGTTTTAAAACAGAATATCATGCAGATGACGAA
AGGGCTTTGGTTTGCGGCGGCAGCTGCGACCACATTAATTCTGAAGGCGG
ACGCTTTCTTGCCGTTGCAGCCTGCGACAAAATACAGTAGCCATGTCCTA
CCAGTACACCTCGCAGCTCTGACACCAACATCACTGCAGCCACGAACCGG
AGCCATGCGCCCCCTGACAGCTAGCGGGGGCGATGGCAATGGCGGAGAAA
CCACCTACAAGGTCCAGGTCACGGGGAACGTTGAGGTGACGCCCGCGATG
AGGGATTACGTTGAGAAGAAGCTAGGCAAGGTGCTGGTGAAAATGCCCGT
GCACGACGCCATCAACAAGGTCGACGTCCATTTGTCCGTGGTGAATCTGG
CGCACGCGGCGAAACACTCGCACACGGTGGAGGCCACGCTCTTCATGAAG
GGCGGTCAGGTGCTCcgggcctcggaggagacggacTACATGTACGCCTC
CATCGACCTGGTCTCGCACCGTATTACCAGGCTGCTGCGCAAGTTCAAGG
ATCGCAAGATCGGGAAGCGGAAAGAGGTGAActtcgaggaggacggcgag
tcCGAGATGGAGAGCCTGGGCttgacgggggcgggggcggagggggggga
gggcggcttcCAAGACCCGGCCAAGGGGGTGGACATGAGGGTGGTGAAGC
GGAAGCAGTTCGATATGCCGGCCATGTCGaCCGCGGACGCCATTGTCTGC
CTCGAGTACATCGGCCATGATTTCTACGTCTTCCGCAACGAGGACTCGGG
GGAGATCAATGTCGTCTACAAGCGCAAGCTGGGCGGCGTTGGCGTGATCG
AGCCCCGCGCATGAATGTGGAGGGAATTTGCGTGTCATAGACAGGAAAAC
CTTTTCGCTTCTATTTCTGTTGGCCTTCGCTTGTTCCTTCTTCAACAAGT
CCTCTGTTGGAACTCGTGGACGTCTCCGTCCTCTGCCCCCAATAGACGCG
TGAACTCGTGCTTTCTGACCTCACCATTCTGTTTTCTGCCCTCTTCTGTC
GTTTTAAAACAGAATATCATGCAGATGACGAAAGGGCTTTGGTTTGCGGC
GGCAGCTGCGACCACATTAATTCTGAAGGCGGACGCTTTCTTGCCGTTGC
AGCCTGCGACAAAATACAGTAGCCATGTCCTACCAGTACACCTCGCAGCT
CTGACACCAACATCACTGCAGCCACGAACCGGAGCCATGCGCCCCCTGAC
AGCTAGCGGGGGCGATGGCAATGGCGGAGAAACCACCTACAAGGTCCAGG
TCACGGGGAACGTTGAGGTGACGCCCGCGATGAGGGATTACGTTGAGAAG
AAGCTAGGCAAGGTGCTGGTGAAAATGCCCGTGCACGACGCCATCAACAA
GGTCGACGTCCATTTGTCCGTGGTGAATCTGGCGCACGCGGCGAAACACT
CGCACACGGTGGAGGCCACGCTCTTCATGAAGGGCGGTCAGGTGCTCcgg
gcctcggaggagacggacTACATGTACGCCTCCATCGACCTGGTCTCGCA
CCGTATTACCAGGCTGCTGCGCAAGTTCAAGGATCGCAAGATCGGGAAGC
GGAAAGAGGTGAActtcgaggaggacggcgagtcCGAGATGGAGAGCCTG
GGCttgacgggggcgggggcggaggggggggagggcggcttcCAAGACCC
GGCCAAGGGGGTGGACATGAGGGTGGTGAAGCGGAAGCAGTTCGATATGC
CGGCCATGTCGaCCGCGGACGCCATTGTCTGCCTCGAGTACATCGGCCAT
GATTTCTACGTCTTCCGCAACGAGGACTCGGGGGAGATCAATGTCGTCTA
CAAGCGCAAGCTGGGCGGCGTTGGCGTGATCGAGCCCCGCGCATGA

Synonyms

Publications