|
|
Properties
| Property Name | Value |
|---|
| Product | RNA helicase, DEAD-box type |
| Orig transcript id | gnl|cribi|Naga_100244g7.1332.mrna |
| Orig protein id | gnl|cribi|Naga_100244g7.1332 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037249.1 | supercontig | KK037249.1:474683..477437 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8634 ID=rna8634|Name=rna8634|organism=Nannochloropsis gaditana|type=mRNA|length=1520bp
ATGCAGGATCGGGCGGCTCGGGGCCCCGTCATTTTTCTTGTCCTCCTCGC
ATTCCAGCTCATCTCCACCGTCACCGGGCTCAGATCCTGTGCAGGCATGC
GAGCCCGGGTCTTGCCGGGATTCATATTTCGACTTCACAACAACCAGAAT
GGGGAATTCTCTGCAATTTTGACACTCCCATACCGGAGATGGGGACCTTC
ATTGCGCTCTTGTATTAATGTTCCTTATCAACGGGGCTCGACTGCATCGA
CCGTCTCCACTCCAGGTACCACCCAACCTGCTCCTAGACCAAAGAGCCTA
CAGGACCTACGGGAAATTGCTTCGTTTTTCCCGGGTACTCCAAAAGACAA
CAGTACTGCCTTTTTCCACGCCTCTTGCGAATTTGCCACCGTCCCAGAGG
CAGTCGCTACGGCCTTGCATATGTCCCATGATCGCGCAGCAAAGCTTCAC
GAGATCGGAGCTGTTTATATCTACAGGCAGAATAAATTTCGGCGCACTCA
CTTGATAGAGAAGTATCCACCTTCAACGGTTTTGGAAGGAGACCTCTTTC
GGGTCTACTTATTCCCACGCCGTTTCCCGGAATGCATGATTGACTATACC
TTCCGGGTAATATGGGAGAACGACGACCTGCTTCTGGTGGACAAGCCTCC
TGGCTGTCCCTGTTCCTTGCACGTCTCAAATGCACTCGAAGCATTGGACG
TGGCAGCCTCGGCAAGTTTGGGCCTTAACCTTATCCGTATGAATCGCCTT
GATGTCGTCACTTCCGGGCTCGTGCCTCTGGCCAAGACCGCGCAGGGTGC
CACTCGTTTTTGGGAGGAGATACGCCGCGACCGGCTAGGCAAGAGGTACA
AAGCCCTCCTGACGGGCCCCGTCCCCGTGGGTCTCCTCGAGCACTACATG
CCAGGGAAAATCATCCACCGCCGGCCCGCCCCCCGCGCCATCAGCCGGCG
GCCTCTGCCGGGCTGGAAGCTCTGTCAGACCCGCGTCTTGTCCTGCCAAC
CCGTCGCTTTCTCAGAGTTGAACTTGGTCGCTATCCACGATGGTCAAGAT
GGCGGCTCTGGCGGCGAGAAGGACCTGCCGCCCTCTCTTTACGAGGTCGA
GGCCGAGCTTGTCACTGGCAGGACCCACCAACTTCGCGCAGTTTTCGCTG
CGGAAGGCAGCCCCATCTGGCAAGACAGTATGTATGCCCCAATGACTTCC
TTCCTATTGGAGGATGAAAAGGACCCGGCCATCCAAGCCCTCTACCCCCT
GTGCATGGAGCCCCGAGCCTCCACAGGCATCGCCTTGCAGTGCGCGAGGT
TGTCATTCTGGGAACAGACTGTGCATGCGGGGGCGCCATGGTGGCGCAGA
AAGGGGGTGAACAGAGAAGGGGGCTGTCCAGACGTCGAAAGTGACAGGCA
AGGCTTGCGAGAGTCAAAAGAAGTAAAATAGACAGGCGTAAACGAAAAAG
CTGTCACCCGGCACGCGTTTCCTTTTTGTGCCCCAGAAAACTGGATTCGA
TCATCTTTACATTGCACTTT back to topprotein sequence of rna8634 >rna8634-protein ID=rna8634-protein|Name=rna8634|organism=Nannochloropsis gaditana|type=polypeptide|length=820bp
MSSLKRDHENGHVVDDGEQQVKRAKMDVREEEKEAGPPPEEALRIAEIAA
RAEARAAARASATGSNGGRDAGGNGGAGGIAKGNDKLPPLPTLIEGGAHE
VKFLTKKQREQLALQKLQEKRAAEAPSVKRTGMAMKDVGKGGSAGDGGMG
PPRPGSHRDRDGREGSREGGWRDGARGRASDRGAREERERGGRGLSREER
ERERLERQRQEELQALKDHYLGKKEVKRRVVKPSEKFARIFQFDWEASED
TSRDSNPLYNQRLEVTPLFGRGYVAGVDMREQRKTNRYLEALTLRRQEEE
RRAEEEAGVSRGDRRDKEEERRSFMEDMRRRREAEARGMERATIGVLGQH
WRDKSLESMTERDWRIFREDFDISMRVGRQRVLPLRNWEEANLPASLRKT
VEGMGWKEPSPIQRAAIPVGMGRRDIIGIAETGSGKTGAFAIPMINYCLT
LPAEHRTRTPEEGPLALVMAPTRELAEQIEAQVAILIEGTGLKSCSGVGG
KPIEDQAFALREGVDILIGTPGRLKDLIDSRYLVLNQCNYIVLDEADRMV
DMGFEEQVVAVLDTMGGLLKSENEEEADRQADAAQKGEQLYRVTAMFSAT
MPPAVERIARSYLRAPATIKIGEANSGKNKRIEQRLIFTTEPGKRKAVVD
LLTSPKKEDKFIVFVNAKRACDVLARHLEQTRISCGILHGGKSQDQREAS
LEAFRNGVFTVLVATDVAARGLDIPDVSHVINYDMPAKIENYCHRIGRTG
RAGKEGLATTLLTENDSEVFHDLKNYLESTDMKVPPELGKHAAAQQAPGT
RNEDGKIMGQKRDSVMYSKR back to topmRNA from alignment at KK037249.1:474683..477437- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8634 ID=rna8634|Name=rna8634|organism=Nannochloropsis gaditana|type=mRNA|length=2755bp|location=Sequence derived from alignment at KK037249.1:474683..477437- (Nannochloropsis gaditana)
AGCCCGGCTTCAGTATTTAAAGCGATCACCTTACTCATCGGCTTGAACGC
CTTGACAGGACACATTCGAGTAAGCTTTCATCTTCCCGGCAATGTCATCT
CTCAAGTAAGTTTTTGCTCGTGGTCCTCCGTGACCTCCTCGATGCCCCGT
TTGGCATTCGCGACATCCAAGGCCCTTACCAAGTCCTCATCTCCGATCCT
TGTGTTCCAGGCGCGACCACGAAAATGGGCATGTCGTGGATGATGGCGAG
CAGCAAGTGAAACGGGCGAAGATGGATGTAAGAGAGGAGGAGAAAGAGGC
GGGGCCGCCGCCCGAGGAGGCCTTGCGCATCGCGGAGATTGCGGCGCGGG
CTGAAGCTAGGGCTGCCGCGAGAGCGTCGGCAACAGGGAGTAATGGAGGG
AGAGATGCAGGAGGGAACGGTGGAGCGGGAGGGATTGCGAAAGGGAACGA
TAAGCTTCCGCCTTTGCCAACCCTGATTGAAGGGGGAGCGCATGAGGTGA
AGTTTCTGACCAAGAAACAACGGGAGCAACTGGCGTTGCAGAAATTGCAG
GAGAAGCGGGCAGCAGAAGCCCCGAGTGTGAAGAGGACCGGTATGGCAAT
GAAGGATGTCGGCAAGGGTGGCAGTGCGGGGGATGGAGGCATGGGTCCGC
CCCGGCCCGGGTCGCACCGGGACCGCGACGGGCGAGAGGGAAGCCGGGAA
GGAGGCTGGAGGGATGGGGCCCGTGGGAGGGCTTCCGATCGTGGAGCTAG
GGAGGAGAGGGAGCGTGGAGGAAGGGGTTTGAGTCGGGAAGAGCGGGAGC
GGGAGCGTTTGGAGCGGCAACGCCAAGAAGAGCTGCAGGCGCTGAAAGAC
CACTATCTGGGGAAGAAGGAGGTGAAGCGGCGCGTGGTGAAGCCCAGCGA
GAAGTTCGCGCGCATTTTCCAGTTTGACTGGGAGGCTTCCGAAGACACGA
GCCGGGACAGCAACCCCCTGTACAACCAGCGGCTGGAGGTGACCCCCTTG
TTCGGGAGGGGGTACGTGGCGGGCGTGGATATGCGGGAGCAGCGGAAGAC
GAACAGGTACCTGGAGGCGCTGACGCTGAGACGGCAGGAGGAGGAGCGAC
GGGCGGAGGAGGAGGCGGGCGTGAGTCGGGGGGACAGGCGGGACAAGGAG
GAAGAGCGCCGGTCCTTCATGGAGGACATGCGGCGGCGGCGGGAGGCGGA
GGCTCGGGGCATGGAGAGGGCGACGATTGGGGTGCTGGGGCAGCACTGGC
GGGACAAGAGCTTGGAGAGCATGACCGAGAGGGACTGGCGGATCTTCCGG
GAGGACTTCGACATCAGCATGCGGGTCGGGCGCCAGCGCGTCTTGCCTCT
TCGCAACTGGGAGGAGGCGAACCTGCCTGCCAGCTTGCGCAAGACCGTTG
AGGGCATGGGCTGGAAAGAGCCCTCGCCCATTCAGCGGGCTGCCATCCCG
GTGGGGATGGGCCGCCGGGACATCATAGGGATCGCGGAGACGGGGTCTGG
GAAGACGGGGGCCTTCGCCATCCCCATGATCAACTACTGCCTGACCCTGC
CGGCGGAGCACCGGACCCGCACGCCGGAGGAAGGGCCGCTGGCTCTGGTC
ATGGCGCCAACCCGGGAGCTGGCGGAGCAGATCGAGGCGCAGGTTGCGAT
TTTGATCGAGGGGACGGGTCTGAAGAGTTGCTCGGGCGTGGGGGGAAAGC
CCATTGAGGACCAAGCCTTTGCCCTGCGCGAGGGCGTGGACATATTGATT
GGGACGCCGGGCAGGCTCAAGGACCTGATCGACTCCCGGTACCTGGTGCT
GAACCAGTGCAACTACATCGTTCTGGACGAGGCGGACAGGATGGTGGACA
TGGGCTTCGAGGAGCAGGTGGTGGCCGTGCTCGACACCATGGGAGGCCTC
CTGAAGTCCGAGAACGAGGAGGAGGCGGACCGGCAGGCGGACGCGGCGCA
GAAGGGGGAGCAGCTCTACCGTGTCACCGCCATGTTCTCGGCCACCATGC
CGCCGGCAGTGGAGCGCATCGCTCGGTCCTACCTGAGGGCGCCCGCCACG
ATCAAGATCGGAGAGGCCAACAGCGGGAAGAACAAGCGGATCGAGCAACG
CCTCATCTTCACCACGGAGCCGGGAAAGAGGAAGGCGGTGGTGGATCTCC
TGACCAGCCCGAAGAAAGAGGACAAGTTCATCGTCTTTGTCAACGCCAAG
CGGGCCTGCGATGTGCTGGCTCGGCATCTGGAGCAGACGCGCATCTCCTG
CGGGATTCTGCATGGGGGCAAGAGCCAGGACCAGCGCGAGGCCAGCCTGG
AGGCCTTTCGAAACGGGGTTTTCACCGTCTTGGTGGCCACAGACGTGGCA
GCCCGAGGCCTGGACATCCCCGACGTCTCGCATGTGATCAATTACGACAT
GCCCGCTAAGATAGAGAACTACTGCCACAGGATCGGGCGGACGGGGCGCG
CGGGCAAGGAGGGGCTGGCGACGACGCTCCTGACGGAGAACGACAGCGAG
GTCTTCCACGACTTGAAGAACTACCTGGAATCCACGGACATGAAGGTGCC
TCCCGAGCTTGGGAAGCACGCGGCCGCCCAGCAAGCCCCGGGGACCCGCA
ACGAGGACGGCAAGATCATGGGCCAGAAGAGGGACAGCGTCATGTACTCG
AAGCGTTAAGGGGGTATGGCATCGTGCCCAAAAAAGTGCAATGTAAAGAT
GATCGAATCCAGTTTTCTGGGGCACAAAAAGGAAACGCGTGCCGGGTGAC
AGCTT back to topCoding sequence (CDS) from alignment at KK037249.1:474683..477437- >rna8634 ID=rna8634|Name=rna8634|organism=Nannochloropsis gaditana|type=CDS|length=4926bp|location=Sequence derived from alignment at KK037249.1:474683..477437- (Nannochloropsis gaditana)
GCGCGACCACGAAAATGGGCATGTCGTGGATGATGGCGAGCAGCAAGTGA
AACGGGCGAAGATGGATGTAAGAGAGGAGGAGAAAGAGGCGGGGCCGCCG
CCCGAGGAGGCCTTGCGCATCGCGGAGATTGCGGCGCGGGCTGAAGCTAG
GGCTGCCGCGAGAGCGTCGGCAACAGGGAGTAATGGAGGGAGAGATGCAG
GAGGGAACGGTGGAGCGGGAGGGATTGCGAAAGGGAACGATAAGCTTCCG
CCTTTGCCAACCCTGATTGAAGGGGGAGCGCATGAGGTGAAGTTTCTGAC
CAAGAAACAACGGGAGCAACTGGCGTTGCAGAAATTGCAGGAGAAGCGGG
CAGCAGAAGCCCCGAGTGTGAAGAGGACCGGTATGGCAATGAAGGATGTC
GGCAAGGGTGGCAGTGCGGGGGATGGAGGCATGGGTCCGCCCCGGCCCGG
GTCGCACCGGGACCGCGACGGGCGAGAGGGAAGCCGGGAAGGAGGCTGGA
GGGATGGGGCCCGTGGGAGGGCTTCCGATCGTGGAGCTAGGGAGGAGAGG
GAGCGTGGAGGAAGGGGTTTGAGTCGGGAAGAGCGGGAGCGGGAGCGTTT
GGAGCGGCAACGCCAAGAAGAGCTGCAGGCGCTGAAAGACCACTATCTGG
GGAAGAAGGAGGTGAAGCGGCGCGTGGTGAAGCCCAGCGAGAAGTTCGCG
CGCATTTTCCAGTTTGACTGGGAGGCTTCCGAAGACACGAGCCGGGACAG
CAACCCCCTGTACAACCAGCGGCTGGAGGTGACCCCCTTGTTCGGGAGGG
GGTACGTGGCGGGCGTGGATATGCGGGAGCAGCGGAAGACGAACAGGTAC
CTGGAGGCGCTGACGCTGAGACGGCAGGAGGAGGAGCGACGGGCGGAGGA
GGAGGCGGGCGTGAGTCGGGGGGACAGGCGGGACAAGGAGGAAGAGCGCC
GGTCCTTCATGGAGGACATGCGGCGGCGGCGGGAGGCGGAGGCTCGGGGC
ATGGAGAGGGCGACGATTGGGGTGCTGGGGCAGCACTGGCGGGACAAGAG
CTTGGAGAGCATGACCGAGAGGGACTGGCGGATCTTCCGGGAGGACTTCG
ACATCAGCATGCGGGTCGGGCGCCAGCGCGTCTTGCCTCTTCGCAACTGG
GAGGAGGCGAACCTGCCTGCCAGCTTGCGCAAGACCGTTGAGGGCATGGG
CTGGAAAGAGCCCTCGCCCATTCAGCGGGCTGCCATCCCGGTGGGGATGG
GCCGCCGGGACATCATAGGGATCGCGGAGACGGGGTCTGGGAAGACGGGG
GCCTTCGCCATCCCCATGATCAACTACTGCCTGACCCTGCCGGCGGAGCA
CCGGACCCGCACGCCGGAGGAAGGGCCGCTGGCTCTGGTCATGGCGCCAA
CCCGGGAGCTGGCGGAGCAGATCGAGGCGCAGGTTGCGATTTTGATCGAG
GGGACGGGTCTGAAGAGTTGCTCGGGCGTGGGGGGAAAGCCCATTGAGGA
CCAAGCCTTTGCCCTGCGCGAGGGCGTGGACATATTGATTGGGACGCCGG
GCAGGCTCAAGGACCTGATCGACTCCCGGTACCTGGTGCTGAACCAGTGC
AACTACATCGTTCTGGACGAGGCGGACAGGATGGTGGACATGGGCTTCGA
GGAGCAGGTGGTGGCCGTGCTCGACACCATGGGAGGCCTCCTGAAGTCCG
AGAACGAGGAGGAGGCGGACCGGCAGGCGGACGCGGCGCAGAAGGGGGAG
CAGCTCTACCGTGTCACCGCCATGTTCTCGGCCACCATGCCGCCGGCAGT
GGAGCGCATCGCTCGGTCCTACCTGAGGGCGCCCGCCACGATCAAGATCG
GAGAGGCCAACAGCGGGAAGAACAAGCGGATCGAGCAACGCCTCATCTTC
ACCACGGAGCCGGGAAAGAGGAAGGCGGTGGTGGATCTCCTGACCAGCCC
GAAGAAAGAGGACAAGTTCATCGTCTTTGTCAACGCCAAGCGGGCCTGCG
ATGTGCTGGCTCGGCATCTGGAGCAGACGCGCATCTCCTGCGGGATTCTG
CATGGGGGCAAGAGCCAGGACCAGCGCGAGGCCAGCCTGGAGGCCTTTCG
AAACGGGGTTTTCACCGTCTTGGTGGCCACAGACGTGGCAGCCCGAGGCC
TGGACATCCCCGACGTCTCGCATGTGATCAATTACGACATGCCCGCTAAG
ATAGAGAACTACTGCCACAGGATCGGGCGGACGGGGCGCGCGGGCAAGGA
GGGGCTGGCGACGACGCTCCTGACGGAGAACGACAGCGAGGTCTTCCACG
ACTTGAAGAACTACCTGGAATCCACGGACATGAAGGTGCCTCCCGAGCTT
GGGAAGCACGCGGCCGCCCAGCAAGCCCCGGGGACCCGCAACGAGGACGG
CAAGATCATGGGCCAGAAGAGGGACAGCGTCATGTACTCGAAGCGTTAAA
TGTCATCTCTCAAGCGCGACCACGAAAATGGGCATGTCGTGGATGATGGC
GAGCAGCAAGTGAAACGGGCGAAGATGGATGTAAGAGAGGAGGAGAAAGA
GGCGGGGCCGCCGCCCGAGGAGGCCTTGCGCATCGCGGAGATTGCGGCGC
GGGCTGAAGCTAGGGCTGCCGCGAGAGCGTCGGCAACAGGGAGTAATGGA
GGGAGAGATGCAGGAGGGAACGGTGGAGCGGGAGGGATTGCGAAAGGGAA
CGATAAGCTTCCGCCTTTGCCAACCCTGATTGAAGGGGGAGCGCATGAGG
TGAAGTTTCTGACCAAGAAACAACGGGAGCAACTGGCGTTGCAGAAATTG
CAGGAGAAGCGGGCAGCAGAAGCCCCGAGTGTGAAGAGGACCGGTATGGC
AATGAAGGATGTCGGCAAGGGTGGCAGTGCGGGGGATGGAGGCATGGGTC
CGCCCCGGCCCGGGTCGCACCGGGACCGCGACGGGCGAGAGGGAAGCCGG
GAAGGAGGCTGGAGGGATGGGGCCCGTGGGAGGGCTTCCGATCGTGGAGC
TAGGGAGGAGAGGGAGCGTGGAGGAAGGGGTTTGAGTCGGGAAGAGCGGG
AGCGGGAGCGTTTGGAGCGGCAACGCCAAGAAGAGCTGCAGGCGCTGAAA
GACCACTATCTGGGGAAGAAGGAGGTGAAGCGGCGCGTGGTGAAGCCCAG
CGAGAAGTTCGCGCGCATTTTCCAGTTTGACTGGGAGGCTTCCGAAGACA
CGAGCCGGGACAGCAACCCCCTGTACAACCAGCGGCTGGAGGTGACCCCC
TTGTTCGGGAGGGGGTACGTGGCGGGCGTGGATATGCGGGAGCAGCGGAA
GACGAACAGGTACCTGGAGGCGCTGACGCTGAGACGGCAGGAGGAGGAGC
GACGGGCGGAGGAGGAGGCGGGCGTGAGTCGGGGGGACAGGCGGGACAAG
GAGGAAGAGCGCCGGTCCTTCATGGAGGACATGCGGCGGCGGCGGGAGGC
GGAGGCTCGGGGCATGGAGAGGGCGACGATTGGGGTGCTGGGGCAGCACT
GGCGGGACAAGAGCTTGGAGAGCATGACCGAGAGGGACTGGCGGATCTTC
CGGGAGGACTTCGACATCAGCATGCGGGTCGGGCGCCAGCGCGTCTTGCC
TCTTCGCAACTGGGAGGAGGCGAACCTGCCTGCCAGCTTGCGCAAGACCG
TTGAGGGCATGGGCTGGAAAGAGCCCTCGCCCATTCAGCGGGCTGCCATC
CCGGTGGGGATGGGCCGCCGGGACATCATAGGGATCGCGGAGACGGGGTC
TGGGAAGACGGGGGCCTTCGCCATCCCCATGATCAACTACTGCCTGACCC
TGCCGGCGGAGCACCGGACCCGCACGCCGGAGGAAGGGCCGCTGGCTCTG
GTCATGGCGCCAACCCGGGAGCTGGCGGAGCAGATCGAGGCGCAGGTTGC
GATTTTGATCGAGGGGACGGGTCTGAAGAGTTGCTCGGGCGTGGGGGGAA
AGCCCATTGAGGACCAAGCCTTTGCCCTGCGCGAGGGCGTGGACATATTG
ATTGGGACGCCGGGCAGGCTCAAGGACCTGATCGACTCCCGGTACCTGGT
GCTGAACCAGTGCAACTACATCGTTCTGGACGAGGCGGACAGGATGGTGG
ACATGGGCTTCGAGGAGCAGGTGGTGGCCGTGCTCGACACCATGGGAGGC
CTCCTGAAGTCCGAGAACGAGGAGGAGGCGGACCGGCAGGCGGACGCGGC
GCAGAAGGGGGAGCAGCTCTACCGTGTCACCGCCATGTTCTCGGCCACCA
TGCCGCCGGCAGTGGAGCGCATCGCTCGGTCCTACCTGAGGGCGCCCGCC
ACGATCAAGATCGGAGAGGCCAACAGCGGGAAGAACAAGCGGATCGAGCA
ACGCCTCATCTTCACCACGGAGCCGGGAAAGAGGAAGGCGGTGGTGGATC
TCCTGACCAGCCCGAAGAAAGAGGACAAGTTCATCGTCTTTGTCAACGCC
AAGCGGGCCTGCGATGTGCTGGCTCGGCATCTGGAGCAGACGCGCATCTC
CTGCGGGATTCTGCATGGGGGCAAGAGCCAGGACCAGCGCGAGGCCAGCC
TGGAGGCCTTTCGAAACGGGGTTTTCACCGTCTTGGTGGCCACAGACGTG
GCAGCCCGAGGCCTGGACATCCCCGACGTCTCGCATGTGATCAATTACGA
CATGCCCGCTAAGATAGAGAACTACTGCCACAGGATCGGGCGGACGGGGC
GCGCGGGCAAGGAGGGGCTGGCGACGACGCTCCTGACGGAGAACGACAGC
GAGGTCTTCCACGACTTGAAGAACTACCTGGAATCCACGGACATGAAGGT
GCCTCCCGAGCTTGGGAAGCACGCGGCCGCCCAGCAAGCCCCGGGGACCC
GCAACGAGGACGGCAAGATCATGGGCCAGAAGAGGGACAGCGTCATGTAC
TCGAAGCGTTAAATGTCATCTCTCAA back to top
|