rna8625, rna8625 (mRNA) Nannochloropsis gaditana

Overview
Namerna8625
Unique Namerna8625
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1809
Alignment locationKK037249.1:453371..454813 -

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Properties
Property NameValue
Productmethionyl-trna formyltransferase
Orig transcript idgnl|cribi|Naga_100039g4.4430.mrna
Orig protein idgnl|cribi|Naga_100039g4.4430
GeneFMT
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:453371..454813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
FMTgene8360Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8625rna8625-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22092.1cds8598Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8625 ID=rna8625|Name=rna8625|organism=Nannochloropsis gaditana|type=mRNA|length=1809bp
CTTCCATACGTTCCCACCCAAAATAATGTTCCATGGCTGTGTCCGAACCC
GGCATGCTACCACACTTCCCAGCAAAATTATTGCTCTGTGAATTATAGTC
CAAAACTCACCGCAATCACGTTACTGCATTATGTGTCACTTGTTATGATG
AGTTTCTGAAATCCCATCAAACTTTTGTTAAGGCCGGAACCACCTTCTCG
CCAGGGACCGGGCTCCCCCTCTCAATTGATCACTTCTCGATGTCTGCTGC
CGGTCGCGATACCCTCACCGTGGCATCGATTTTTACACCAAGTGAGTGTA
TGCGTCATTTAGAAAGTCTAGAATGTGGCAAAATACATGGCAAAAGCCTG
CTCAATGAGGCAGAGGGATATCACTTCGACCCAAACTCCTTGCAAGACAG
CCCAGTAAGGGGCCCTGCACTTAAGACGACGAGCGATGAAATCAAACCTC
CGTGTCAGTCATCTACCTCTTCCGATAGCTTTAAAAAGCATTACATCACA
TGGCTGTGGATTGCTCTCGGTCTGGCTCTACTGGCTCTGGGTGTGTTGAC
AGGATTCCAAGTGTACTCGAGCCTTCAGAAAGCTGAAGCGGACAGGCAAA
GCACTCAAACTTCCTCCATTTTCGCCATCGACAAGAATGATACCGTGACA
CGTATGATCAAATATGAAGAGCAGCTTAACATGCTCAACAGGACGATAGT
AAGGCTAGAAACCGAACAAGTAAAGGCAGCGAGCAGGCTGGAAGCTCGAC
AAGCGAGGGTCTTTGAGGACGAGTCCCTCCATCTATGCACCGAACTTCTC
ACCGCCGTCGAAGAAAGCTTCGGCGGGAGCCACGCCCGCACCGAGTTTGT
GTGTGAGTCTCAAACGGGCTGGCAACTCGATGGTTGTCCCGCCACCGCCC
AGGTCCTGCAAGCCCGCCTCGGTCGTTTCACCTCCTCAGCGGACGGTCCC
TGTGCGGAGAGGGGAAGCCCGGCCACGTGGCGACTAGAGAGCTGTCCTTC
CAGCCTGGACCTCACCACGGACGTGCAGCGCGCCATCAAGCAGAGCAAAG
GCGAACCGGTGTTGGACACGCCCATGCAGTTGGTGCGAAGCGGGGCACTG
CGGACAGACCCCTGCCCTCGCTCTTACAAGCAGCTGCAGATTGTCTACCT
GTGCCCCCAGCAGAGCGAGGCCACGAGGGAGCAGCGTTGCAAAACGATTG
TGAAGCAGCAGGCGAGTAGACGGGCAGATGCGGTGACCGCGCCCGAGGCG
TGAGGATGGGGAGCGAGCGCAAAGGGCCAGGAGACGAGGAGGCCTAGTGC
GGGAGGTTCCCTGCCGAGCCAGGGGATGGGCAGGACATGCGCTTGAAGTA
GCCGCGGAGGGAGAGAATCACAAAAAGGAAGGGTGGGATGAGGAGGGACT
GTATTGAGGAGACGTAGAAATCGTATACACAGGCGCGAGCAGACCTCAAA
GAGGCGAGGGGGTCGAAGACGGGTATACATGGGCCGTGTGCATGAATTGA
GGCTTGCAAGCGCCTAATGAAGTCGTTGTGTCGATGACAAGGCTGGGGTC
TATCTGTAAACGCACCGACTTCAACATTGGTGTATGTAATGGTGTCTCGC
TACGCGTGTACAATGTTCTGTGGTCCTCTGTGTGAGTGCAAAAATTCGTG
TGCCTTTGGTGTGCTAATACGGTGAATATGTCTGGATGCGTCCAAAGTAT
GAAAGTGACGCAGAAAGAAAGAAGATACCTTTTTTGAGGGCAGCATTATA
ATGGACAAGAGCCCTACGCCCAGACAGACAATACGTGTTCAACCACAAGA
GCGCGCTCA
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protein sequence of rna8625

>rna8625-protein ID=rna8625-protein|Name=rna8625|organism=Nannochloropsis gaditana|type=polypeptide|length=423bp
MSLGRQRVGARSVVAATSAPAYLLKVMLPFILFSTSKAFYTPIALAGRRL
GAVQEVIGRNAGPAFRRLGGLRASSKSAGTKRVVFLGTPDVAALTLSRLL
AASKDGRGGGFEIVSVVTQPPAPSGRKLKLTPSPVQTLAESEKVPVLCPD
KAKDPIFLSALETLAPDLCITAAYGNFLPSKFLAIPRYGTLNIHPSLLPK
YRGASPVQRTLQAGDAVTGVSVLFTELKMDAGPLLAQVPYPLRGEEKAPE
LLQTLFTAGTEALLEALPSVWDGTARLVEQQEEQASQAEKIRAEEAQICF
ERESALRVHNKVRAFAGWPGTWAVFEVAEEGEKEGGGKAVRLKIVTTRVG
EGEEGVGAGRVVGVLGGKKGGLRVRCGDGSVLDILEVQPPGKKVMDCKSY
ANGLRGRTLRWRPQDAKEGAAAA
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mRNA from alignment at KK037249.1:453371..454813-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8625 ID=rna8625|Name=rna8625|organism=Nannochloropsis gaditana|type=mRNA|length=1443bp|location=Sequence derived from alignment at KK037249.1:453371..454813- (Nannochloropsis gaditana)
ATGAGCCTGGGCCGTCAGCGCGTCGGAGCCCGTAGCGTTGTTGCTGCGAC
GTCTGCTCCAGCTTACTTGTTAAAAGTGATGCTCCCATTTATTTTATTCA
GCACTTCAAAAGCTTTTTATACGCCAATTGCATTGGCTGGACGACGGCTG
GGAGCTGTTCAAGAGGTAATCGGAAGAAACGCTGGGCCGGCATTCAGGAG
ACTTGGAGGCCTGCGAGGTACGTGGGAAATCCTCTATTTCCGCTATGCCT
AGGATGCAAAGAGATGGGTTTGTATGACCAGCACTCAGAGGAAAAAGGGG
AAAGCAGAGTTGTGGGCATTTTCGCGTGACCTCCTTCGTTCGATCAAGCG
GCAAACTTACGCGACATCCCTTATTTCCTCCTGAACAGCCTCCTCCAAGT
CCGCCGGAACCAAACGCGTCGTATTCCTGGGCACCCCCGACGTGGCAGCC
CTCACGCTCTCACGCCTCCTCGCTGCCTCTAAGGACGGACGCGGGGGAGG
GTTCGAAATAGTCTCCGTTGTCACCCAACCCCCTGCCCCCTCCGGCCGCA
AGCTCAAGCTCACCCCTTCCCCGGTCCAGACACTGGCTGAGTCCGAGAAG
GTCCCCGTGCTCTGCCCCGACAAAGCCAAGGATCCGATCTTTCTATCGGC
TCTGGAAACGCTGGCCCCCGATCTCTGCATCACCGCCGCCTACGGCAACT
TCCTCCCCTCCAAGTTCCTGGCCATCCCCCGGTACGGCACCCTCAACATC
CATCCCTCCCTCCTCCCCAAGTACAGAGGAGCATCGCCCGTGCAGCGCAC
TCTCCAGGCCGGTGACGCAGTGACAGGCGTCTCGGTCCTCTTCACGGAGC
TGAAAATGGACGCGGGGCCCCTCCTTGCCCAGGTCCCCTACCCTTTGAGA
GGAGAAGAGAAGGCGCCCGAGCTCCTGCAGACGCTTTTCACGGCGGGAAC
AGAGGCATTGCTCGAGGCCCTGCCCTCCGTGTGGGACGGAACGGCTAGGC
TGGTCGAGCAGCAGGAGGAGCAGGCGAGCCAGGCGGAGAAGATCCGCGCG
GAGGAGGCGCAGATATGCTTTGAGAGAGAGTCAGCGCTCCGGGTCCACAA
CAAGGTCAGGGCCTTTGCCGGCTGGCCGGGAACATGGGCTGTCTTTGAGG
TGGCGGAAGAGGGGGAGAAGGAGGGAGGGGGGAAGGCGGTGCGGCTGAAG
ATCGTCACGACGCGTGTGGGGGAGGGCGAGGAGGGCGTTGGGGCAGGGAG
GGTGGTGGGAGTGTTGGGAGGGAAGAAAGGAGGGCTGCGGGTGCGGTGCG
GCGATGGGAGTGTGTTGGATATCCTGGAGGTGCAGCCGCCAGGCAAGAAG
GTGATGGACTGCAAGAGCTACGCGAACGGATTGCGCGGTCGGACTCTGCG
CTGGCGGCCTCAGGACGCGAAGGAGGGGGCGGCGGCAGCGTGA
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Coding sequence (CDS) from alignment at KK037249.1:453371..454813-

>rna8625 ID=rna8625|Name=rna8625|organism=Nannochloropsis gaditana|type=CDS|length=2544bp|location=Sequence derived from alignment at KK037249.1:453371..454813- (Nannochloropsis gaditana)
CCTCCTCCAAGTCCGCCGGAACCAAACGCGTCGTATTCCTGGGCACCCCC
GACGTGGCAGCCCTCACGCTCTCACGCCTCCTCGCTGCCTCTAAGGACGG
ACGCGGGGGAGGGTTCGAAATAGTCTCCGTTGTCACCCAACCCCCTGCCC
CCTCCGGCCGCAAGCTCAAGCTCACCCCTTCCCCGGTCCAGACACTGGCT
GAGTCCGAGAAGGTCCCCGTGCTCTGCCCCGACAAAGCCAAGGATCCGAT
CTTTCTATCGGCTCTGGAAACGCTGGCCCCCGATCTCTGCATCACCGCCG
CCTACGGCAACTTCCTCCCCTCCAAGTTCCTGGCCATCCCCCGGTACGGC
ACCCTCAACATCCATCCCTCCCTCCTCCCCAAGTACAGAGGAGCATCGCC
CGTGCAGCGCACTCTCCAGGCCGGTGACGCAGTGACAGGCGTCTCGGTCC
TCTTCACGGAGCTGAAAATGGACGCGGGGCCCCTCCTTGCCCAGGTCCCC
TACCCTTTGAGAGGAGAAGAGAAGGCGCCCGAGCTCCTGCAGACGCTTTT
CACGGCGGGAACAGAGGCATTGCTCGAGGCCCTGCCCTCCGTGTGGGACG
GAACGGCTAGGCTGGTCGAGCAGCAGGAGGAGCAGGCGAGCCAGGCGGAG
AAGATCCGCGCGGAGGAGGCGCAGATATGCTTTGAGAGAGAGTCAGCGCT
CCGGGTCCACAACAAGGTCAGGGCCTTTGCCGGCTGGCCGGGAACATGGG
CTGTCTTTGAGGTGGCGGAAGAGGGGGAGAAGGAGGGAGGGGGGAAGGCG
GTGCGGCTGAAGATCGTCACGACGCGTGTGGGGGAGGGCGAGGAGGGCGT
TGGGGCAGGGAGGGTGGTGGGAGTGTTGGGAGGGAAGAAAGGAGGGCTGC
GGGTGCGGTGCGGCGATGGGAGTGTGTTGGATATCCTGGAGGTGCAGCCG
CCAGGCAAGAAGGTGATGGACTGCAAGAGCTACGCGAACGGATTGCGCGG
TCGGACTCTGCGCTGGCGGCCTCAGGACGCGAAGGAGGGGGCGGCGGCAG
CGTGAATGAGCCTGGGCCGTCAGCGCGTCGGAGCCCGTAGCGTTGTTGCT
GCGACGTCTGCTCCAGCTTACTTGTTAAAAGTGATGCTCCCATTTATTTT
ATTCAGCACTTCAAAAGCTTTTTATACGCCAATTGCATTGGCTGGACGAC
GGCTGGGAGCTGTTCAAGAGGTAATCGGAAGAAACGCTGGGCCGGCATTC
AGGAGACTTGGAGGCCTGCGAGCCTCCTCCAAGTCCGCCGGAACCAAACG
CGTCGTATTCCTGGGCACCCCCGACGTGGCAGCCCTCACGCTCTCACGCC
TCCTCGCTGCCTCTAAGGACGGACGCGGGGGAGGGTTCGAAATAGTCTCC
GTTGTCACCCAACCCCCTGCCCCCTCCGGCCGCAAGCTCAAGCTCACCCC
TTCCCCGGTCCAGACACTGGCTGAGTCCGAGAAGGTCCCCGTGCTCTGCC
CCGACAAAGCCAAGGATCCGATCTTTCTATCGGCTCTGGAAACGCTGGCC
CCCGATCTCTGCATCACCGCCGCCTACGGCAACTTCCTCCCCTCCAAGTT
CCTGGCCATCCCCCGGTACGGCACCCTCAACATCCATCCCTCCCTCCTCC
CCAAGTACAGAGGAGCATCGCCCGTGCAGCGCACTCTCCAGGCCGGTGAC
GCAGTGACAGGCGTCTCGGTCCTCTTCACGGAGCTGAAAATGGACGCGGG
GCCCCTCCTTGCCCAGGTCCCCTACCCTTTGAGAGGAGAAGAGAAGGCGC
CCGAGCTCCTGCAGACGCTTTTCACGGCGGGAACAGAGGCATTGCTCGAG
GCCCTGCCCTCCGTGTGGGACGGAACGGCTAGGCTGGTCGAGCAGCAGGA
GGAGCAGGCGAGCCAGGCGGAGAAGATCCGCGCGGAGGAGGCGCAGATAT
GCTTTGAGAGAGAGTCAGCGCTCCGGGTCCACAACAAGGTCAGGGCCTTT
GCCGGCTGGCCGGGAACATGGGCTGTCTTTGAGGTGGCGGAAGAGGGGGA
GAAGGAGGGAGGGGGGAAGGCGGTGCGGCTGAAGATCGTCACGACGCGTG
TGGGGGAGGGCGAGGAGGGCGTTGGGGCAGGGAGGGTGGTGGGAGTGTTG
GGAGGGAAGAAAGGAGGGCTGCGGGTGCGGTGCGGCGATGGGAGTGTGTT
GGATATCCTGGAGGTGCAGCCGCCAGGCAAGAAGGTGATGGACTGCAAGA
GCTACGCGAACGGATTGCGCGGTCGGACTCTGCGCTGGCGGCCTCAGGAC
GCGAAGGAGGGGGCGGCGGCAGCGTGAATGAGCCTGGGCCGTCAGCGCGT
CGGAGCCCGTAGCGTTGTTGCTGCGACGTCTGCTCCAGCTTACTTGTTAA
AAGTGATGCTCCCATTTATTTTATTCAGCACTTCAAAAGCTTTTTATACG
CCAATTGCATTGGCTGGACGACGGCTGGGAGCTGTTCAAGAGGTAATCGG
AAGAAACGCTGGGCCGGCATTCAGGAGACTTGGAGGCCTGCGAG
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Synonyms
Publications