rna8624, rna8624 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8624
Unique Name	rna8624
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3330
Alignment location	KK037249.1:451438..453246 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100039g5.4421.mrna
Orig protein id	gnl\|cribi\|Naga_100039g5.4421
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:451438..453246 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100039g5	gene8359	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8624	rna8624-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22083.1	cds8597	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:451438..453246+
coding sequence from alignment at KK037249.1:451438..453246+

mRNA sequence

>rna8624 ID=rna8624|Name=rna8624|organism=Nannochloropsis gaditana|type=mRNA|length=3330bp
TTGCGGTGAGTTTTGGACTATAATTCACAGAGCAATAATTTTGCTGGGAA
GTGTGGTAGCATGCCGGGTTCGGACACAGCCATGGAACATTATTTTGGGT
GGGAACGTATGGAAGGCGACAGCTGTGCACCTGGTTCAACAAATCCCCGT
TTTGACATAACCCACATCGGAGTGAGGTTTGACAGCCCGCAACACGTATC
TAACTTTGGCGCCTCCTTGGAGGATGCACAAATGGGTGGATTTACAGCTG
CTGCTCCTTCTATCCGTGTGACCCCTTCTACTTGGGTGTCCCCAACAAAT
AAATAACAACAGTTTCAGCACCGTGTGCGACAAGCTTTACATGTATGACT
TATCCTACACGAAGACGTTGTCTCCTGCTGGTGAATATGAAGAAACCATG
TTGGTTGCAACATTGGCTGGACTTGTTAATCGTAAAGCTCCACGGCTATT
CACTCCATTCTTGCCCGCCGACGACTATTGGTGGGAGTTCTTGAAGAAGC
GAAACTTTCCTCCGTCGATTAATGAGAGAAATTGCCTCGTGCCCTTGCCT
GATCTAGACGCCCTATTGCAAGCCTTTCCTTCCTTTTGGTCGCATGGCGC
CATTCTCTTCGACCCCATGGTGCCAGCCACTAGTAATGTAGCTCAAACTG
CTGCAGGCGTTTGGGATTTGCTGCCCGTTGCCTATCGACCTGAAGACCCG
GCGTCCCTCTACACGCGGTACGTGCAGAGTGGGCGCCTCCCTGTGAATTT
TACATTGGTTGGATTATTTCCCTACAAGGACTGGAAAACTTCTACGGGCA
GCGCGAAAGGCGATGCTTACATGTGGGCGATAGACACCTTTCTCGGCCAC
AGCCTCCAAACTACCGGAAGAAGGAGTCACAAGAACGCAAAGCACGAGAG
ACCCCTAGCGAATCCCACTATGCTGGGGTATTTTGTGATTACTACTGGAC
CCAAGTCCCGACTGGGAGTGGGGCGCAGGGCGTGGCGGGAAGCTACGACC
TTCACACGGTCTCCAACCACGACTACTTCGTAGAAAGCCTTCTTCTTCGA
TTTAAACGTCTGGGCCGACGTAACACCAAACGATGATCCTGAACAGGCGA
TGGGCACGGACCGATTAATACTAGAGGCGATACTGCGGTCCTGCTACGAG
TTGACGGGAGGGGAGAAGATGATAACGGTGGGCGGTTTTACGCCTTGGGT
TTTCAAATATGTTGGTTGGGAGCACCAAGGCGTCGAGACAGAATGGGAGA
CTGTGAAACTGCTCTCCAGGTACAACGCCATGCTCGACGCAGACGCGTGT
TGCGTGGGCGCCATGGCGAATGCCGCCTTCTACCAGCACTACCCTCTACC
CGAGCGCCTGGTCCAGCAACCTGCGCCTGCCCCGGAGACACTGGCACGCA
AAGGCTAGTTGATCCATCCACAAGAAGAACAGATAGCTGAAAGGCAGTCG
TTCTCCTCTTGGGCGTTGTCTGAAAAGATAAGAGTCGCGAATCGAGGTTT
CTATGCCTTCTACGTGGGCGACTTTGACAGCGCGGCGTGGGCTTACCAGC
AGCTGTACCTTTTGTGGGACGACAAGGCTCGAGGGACGGTTCCTTTGGGG
TGGGCATTAAATCCCAATTTATCGATACGTTTCCCGCTCATATTTGACAT
GATGTACGAGGGCCTAACGCCGCAAGACCGGGTGACGACGGGCGACAGCG
GCGGGGGATACCTGAACCCCACCGAGCTTTTTGGACCCCGCTCCAGCGGG
CTACCCGATGGACGCCAGGTGTGGAAGGCGTGGTGCATGCCTCTCTACCA
GAAATTTGGCACGACTTTCACTGGCTTCCTTTTGAACGGCAGTGCGGGGA
ATATGACTCACGAATGCCAGGCATTTTACGCAGAATATCGAATGACGGTC
TCACAAATAATCACCGGCGCAGCCCTGGCTACCCTTCTGTGCCCTCTCTT
GAAGGGAACACCCCTCTTTTCGAAATAAATGATCTCCCTGAAGGCGATGT
CGACGTTGCAGCCCATGCAATGGTGCAACAATACGACCAATTGGGGCAGG
GAAGGCAGTTCATGGTCTTTCGGGGCACCCTGCCGTTCCCTTTCTATTAC
GCTGCTGTCGTTGAGGCGGTCCAAAAGCTGCGGCCCGCTTCGGAAGCCAT
TGATACTTTGACTCTGGCATACTTGGCACGCCTGGTCTTGGGTGGAAACA
ACAATGATCGTGTCACCTACGTTTCTGACACGCTGCCACGGGCGGGTTGC
CATGCCGGTGAGGTCCGCTGGAACGAGACCTTTCTCGTACGCAACAACGG
GTTTAACAACTTAGATGGAAAAGACATTATTTTGCGGGGAGCATTTTCCC
CCTCGCGGGAAGTCACTGGCATGCGTGAAGCCGCTGTCACAGCCAATGAG
GGAGTAGAGATATTCATTCATAGTTCCTTTTTTGAGCTTGCCTGCTGTTG
GAGGTGTATATGAGCTGGAGTACGGCCTAAAGCGTCGCGGGCAAATTAGC
CAGGACTTTACGTCTTTGGGCAATCCCCGATACATTTGCACCGTTGTCAT
TTCGGGAGAGGCGCAAGAAAAGCTTTAATATTTAGTTGTTAGGTTGGTAC
ATACCGGGAGACACAAGGAAATCTTATAATTATGATAAATGGCTTAGATG
ACATGATGCCATGATGATCAAATTTAGGTCCAGCCGAGCCCAGTGACACG
GTCCTGCAGACGACAGACGCTTCCACTTAACGACAGGGCAGGCACATCTG
TCCACAATCCTTTACAACTAGGGCGCAAACATCAGCTTTAACAGTTATTC
GGCAAAAATATTTTGTCGTGTCCCCTCTCCCTGAAGCTTGTCAAAATAAA
TGTCGGCATATTTCCTGCATCTTCCAAATAATGAGCGTTGGTCATTGACC
ACCCATGAGCAGTATCAATGCAAAACCATTCTGACTGAGGCATATTGCTG
CTGTTGTAACTATAGTGCTAAATGGCTAGACTTACAGTGTGTCGTAAAGA
GCTTAGAAAAGGGTTTATATACGTTGTTGATTGCATGCCTTCAAGCGCGT
ACCGCTAGACACTATCACTGCCTTCGTCCTCCTGGTAGCCTGAGGCATTT
AAGTGGACATCGGGTCCTAAGTCACACAGAAACAATCGATGATTCAACCC
TTTAAGTTCGCGGACAAGAACTTCCGACTTGCGCCGCTCTCCCAGGGCAT
GGGTGTGTAGGCGGGGAGGAGACAGAGGAGGTGAAAGTCGACGAAATGCG
ACAGAAGCCGTGTCCCTTCACTATAAGAAGCTCTGTGTTTTTTGTCACAA
ACACCGCCACAAACTTACAAACGGGGCGAG

protein sequence of rna8624

>rna8624-protein ID=rna8624-protein|Name=rna8624|organism=Nannochloropsis gaditana|type=polypeptide|length=337bp
MSAAGRDTLTVASIFTPSECMRHLESLECGKIHGKSLLNEAEGYHFDPNS
LQDSPVRGPALKTTSDEIKPPCQSSTSSDSFKKHYITWLWIALGLALLAL
GVLTGFQVYSSLQKAEADRQSTQTSSIFAIDKNDTVTRMIKYEEQLNMLN
RTIVRLETEQVKAASRLEARQARVFEDESLHLCTELLTAVEESFGGSHAR
TEFVCESQTGWQLDGCPATAQVLQARLGRFTSSADGPCAERGSPATWRLE
SCPSSLDLTTDVQRAIKQSKGEPVLDTPMQLVRSGALRTDPCPRSYKQLQ
IVYLCPQQSEATREQRCKTIVKQQASRRADAVTAPEA

mRNA from alignment at KK037249.1:451438..453246+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8624 ID=rna8624|Name=rna8624|organism=Nannochloropsis gaditana|type=mRNA|length=1809bp|location=Sequence derived from alignment at KK037249.1:451438..453246+ (Nannochloropsis gaditana)
CTTCCATACGTTCCCACCCAAAATAATGTTCCATGGCTGTGTCCGAACCC
GGCATGCTACCACACTTCCCAGCAAAATTATTGCTCTGTGAATTATAGTC
CAAAACTCACCGCAATCACGTTACTGCATTATGTGTCACTTGTTATGATG
AGTTTCTGAAATCCCATCAAACTTTTGTTAAGGCCGGAACCACCTTCTCG
CCAGGGACCGGGCTCCCCCTCTCAATTGATCACTTCTCGATGTCTGCTGC
CGGTCGCGATACCCTCACCGTGGCATCGATTTTTACACCAAGTGAGTGTA
TGCGTCATTTAGAAAGTCTAGAATGTGGCAAAATACATGGCAAAAGCCTG
CTCAATGAGGCAGAGGGATATCACTTCGACCCAAACTCCTTGCAAGACAG
CCCAGTAAGGGGCCCTGCACTTAAGACGACGAGCGATGAAATCAAACCTC
CGTGTCAGTCATCTACCTCTTCCGATAGCTTTAAAAAGCATTACATCACA
TGGCTGTGGATTGCTCTCGGTCTGGCTCTACTGGCTCTGGGTGTGTTGAC
AGGATTCCAAGTGTACTCGAGCCTTCAGAAAGCTGAAGCGGACAGGCAAA
GCACTCAaacttcctccattttcgcCATCGACAAGAATGATACCGTGACA
CGTATGATCAAATATGAAGAGCAGCTTAACATGCTCAACAGGACGATAGT
AAGGCTAGAAACCGAACAAGTAAAGGCAGCGAGCAGGCTGGAAGCTCGAC
AAGCGAGGGTCTTTGAGGACGAGTCCCTCCATCTATGCACCGAACTTCTC
ACCGCCGTCGAAGAAAGCTTCGGCGGGAGCCACGCCCGCACCGAGTTTGT
GTGTGAGTCTCAAACGGGCTGGCAACTCGATGGTTGTCCCGCCACCGCCC
AGGTCCTGCAAGCCCGCCTCGGTCGTTTCACCTCCTCAGCGGACGGTCCC
TgtgcggagaggggaagcccGGCCACGTGGCGACTAGAGAGCTGTCCTTC
CAGCCTGGACCTCACCACGGACGTGCAGCGCGCCATCAAGCAGAGCAAAG
GCGAACCGGTGTTGGACACGCCCATGCAGTTGGTGCGAAGCGGGGCACTG
CGGACAGACCCCTGCCCTCGCTCTTACAAGCAGCTGCAGATTGTCTACCT
GTGCCCCCAGCAGAGCGAGGCCACGAGGGAGCAGCGTTGCAAAACGATTG
TGAAGCAGCAGGCGAGTAGACGGGCAGATGCGGTGACCGCGCCCGAGGCG
TGAGGATGGGGAGCGAGCGCAAAGGGccaggagacgaggaggcctAGTGC
GGGAGGTTCCCTGCCGAGCCAGGGGATGGGCAGGACATGCGCTTGAAGTA
gccgcggagggagagaatcacaaaaaggaagggtgggatgaggagggact
gTATTGAGGAGACGTAGAAATCGTATACACAGGCGCGAGCAGACCTcaaa
gaggcgagggggtCGAAGACGGGTATACATGGGCCGTGTGCATGAATTGA
GGCTTGCAAGCGCCTAATGAAGTCGTTGTGTCGATGACAAGGCTGGGGTC
TATCTGTAAACGCACCGACTTCAACATTGGTGTATGTAATGGTGTCTCGC
TACGCGTGTACAATGTTCTGTGGTCCTCTGTGTGAGTGCAAAAATTCGTG
TGCCTTTGGTGTGCTAATACGGTGAATATGTCTGGATGCGTCCAAAGTAT
GAAAGTGAcgcagaaagaaagaagataCCTTTTTTGAGGGCAGCATTATA
ATGGACAAGAGCCCTACGCCCAGACAGACAATACGTGTTCAACCACAAGA
GCGCGCTCA

Coding sequence (CDS) from alignment at KK037249.1:451438..453246+

>rna8624 ID=rna8624|Name=rna8624|organism=Nannochloropsis gaditana|type=CDS|length=1014bp|location=Sequence derived from alignment at KK037249.1:451438..453246+ (Nannochloropsis gaditana)
ATGTCTGCTGCCGGTCGCGATACCCTCACCGTGGCATCGATTTTTACACC
AAGTGAGTGTATGCGTCATTTAGAAAGTCTAGAATGTGGCAAAATACATG
GCAAAAGCCTGCTCAATGAGGCAGAGGGATATCACTTCGACCCAAACTCC
TTGCAAGACAGCCCAGTAAGGGGCCCTGCACTTAAGACGACGAGCGATGA
AATCAAACCTCCGTGTCAGTCATCTACCTCTTCCGATAGCTTTAAAAAGC
ATTACATCACATGGCTGTGGATTGCTCTCGGTCTGGCTCTACTGGCTCTG
GGTGTGTTGACAGGATTCCAAGTGTACTCGAGCCTTCAGAAAGCTGAAGC
GGACAGGCAAAGCACTCAaacttcctccattttcgcCATCGACAAGAATG
ATACCGTGACACGTATGATCAAATATGAAGAGCAGCTTAACATGCTCAAC
AGGACGATAGTAAGGCTAGAAACCGAACAAGTAAAGGCAGCGAGCAGGCT
GGAAGCTCGACAAGCGAGGGTCTTTGAGGACGAGTCCCTCCATCTATGCA
CCGAACTTCTCACCGCCGTCGAAGAAAGCTTCGGCGGGAGCCACGCCCGC
ACCGAGTTTGTGTGTGAGTCTCAAACGGGCTGGCAACTCGATGGTTGTCC
CGCCACCGCCCAGGTCCTGCAAGCCCGCCTCGGTCGTTTCACCTCCTCAG
CGGACGGTCCCTgtgcggagaggggaagcccGGCCACGTGGCGACTAGAG
AGCTGTCCTTCCAGCCTGGACCTCACCACGGACGTGCAGCGCGCCATCAA
GCAGAGCAAAGGCGAACCGGTGTTGGACACGCCCATGCAGTTGGTGCGAA
GCGGGGCACTGCGGACAGACCCCTGCCCTCGCTCTTACAAGCAGCTGCAG
ATTGTCTACCTGTGCCCCCAGCAGAGCGAGGCCACGAGGGAGCAGCGTTG
CAAAACGATTGTGAAGCAGCAGGCGAGTAGACGGGCAGATGCGGTGACCG
CGCCCGAGGCGTGA

Synonyms

Publications