rna8621, rna8621 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8621
Unique Name	rna8621
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	444
Alignment location	KK037249.1:443963..447233 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100039g10.4425.mrna
Orig protein id	gnl\|cribi\|Naga_100039g10.4425
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:443963..447233 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100039g10	gene8356	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8621	rna8621-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22087.1	cds8594	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:443963..447233+
coding sequence from alignment at KK037249.1:443963..447233+

mRNA sequence

>rna8621 ID=rna8621|Name=rna8621|organism=Nannochloropsis gaditana|type=mRNA|length=444bp
ATGCTGCGCCATCAATCCATCCACAATAGTCCATTTAACTTTTCGACCAC
CTTGAGTCTCGATGGTCTCCTAAATGGTAGCATCTTTGTGATGGGAGTCA
TCATGTGCTTTATTCTTGTGGGGGTGGTACACTTCACAAACAAGGCAGCC
AGTCGAGACAAAATATCTGAACTCCCACAAACAATTCAGCAACAGCAGAA
TCCTTTAAACACTTCGCTGTTACAGTCCCCGATCGTGACAGTGGCTGAAA
CTTTGACAACTTGCAGTGTAAGCCCCCCGCATGTATCGTCCCTAAAATTA
TTGCTATACCATGTTGTGTCATACTCTGCTGACAACTGTTGTACAAATGC
GACTATGTCCAAAGAAAGCCAGATCATTCCTGAATGCTTAAAGTATCAAT
ATTTCGAGGGCCGTGAAAGCATCATGACTACGCGATCGCCATAA

protein sequence of rna8621

>rna8621-protein ID=rna8621-protein|Name=rna8621|organism=Nannochloropsis gaditana|type=polypeptide|length=665bp
MSDAENKDSAAGWRPGKVIGKIRERQSRRRALRKKGQETCETGNETLQEE
IPIRPERIHDARVNYSLRNEQIKVAVQAGEGDSFAARQVGGWFPGKYAEK
LFRRGAKRLLGLVNEENQQRHDEAITVGKLTLIFKGAKKLGKGGRRARLE
ENQGGGGSGILNPYFEVWCEGTKRLIKPKAFQDSSEGGVGVEGGDWTPVG
LPYPDTDPAWQETALHFDVTDITTDVHILLLDKRPLRTLPVGRLILPLPN
FLGCRHPLPPETSVFDLVATEMIECGQRPATYQALLSQKYAPQMKVASSP
SSILPAINDGVVGQVVLEVALETSHDLFNTYLASRPLRADSFSSGSTSSR
VGAEEPAPASEIKAAAEEPTLQNVDIRQLAINVFRIKKALEAPPLLFYLL
DHPIFFFPLVSYLVFAPLWTLPLHVCLLPFFNGIFTARNAVPSFLSTDSS
SLPSSTSFPSIEYWPPGLVERVQEMESSSARTKLRRLRTALRWLQDHLGL
VASLLERCTFIFNWEDPHVTLPVTAGIAVGTSVLSLMLYFIPIKILIWCV
VVSLYMKMRKKRLESSLEMVQTKGIHVHETKEKRERRATCDLRQAGDTPG
VEEAPKVNCKALLGSSRRLSTVTSNVFARTPDALEVLHRRIARGYMHKDP
DFGPKIMSDCCKKTD

mRNA from alignment at KK037249.1:443963..447233+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8621 ID=rna8621|Name=rna8621|organism=Nannochloropsis gaditana|type=mRNA|length=3271bp|location=Sequence derived from alignment at KK037249.1:443963..447233+ (Nannochloropsis gaditana)
CCGTCATATCCTATATAAATTTCTATAGCAACACCACAGCGTCTATGTCA
GACGCAGAAAACAAAGATTCTGCCGCTGGCTGGCGTCCAGGAAAAGTTAT
CGGGAAAATCCGTGAACGACAATCGAGAAGACGAGCGCTTCGGAAAAAAG
GGCAAGAAACGTGTGAAACTGGAAACGAGACCCTTCAAGAAGAGATTCCA
ATACGGCCGGAAAGGATACACGACGCTCGTGTGAATTATTCATTACGAAA
TGAACAGATCAAAGTAGCGGTTCaagctggggagggggacagctTCGCAG
CGCGGCAGGTCGGAGGATGGTTTCCCGGAAAATACGCAGAGAAACTTTTT
CGTCGTGGCGCGAAACGTTTGCTCGGCTTGGTGAACGAGGAAAATCAACA
GCGCCATGATGAAGCGATTACTGTGGGAAAACTGACTCTAATTTTCAAAG
GCGCAAAAAAGTTgggcaaagggggaagaagagcaagactTGAGGAAaat
caaggagggggggggagcggaatACTTAATCCTTACTTCGAGGTCTGGTG
CGAAGGCACCAAGCGTCTCATCAAACCCAAAGCATTTCAGGATAGTAGTg
aaggaggcgtgggggtggaaggaggcgacTGGACACCCGTGGGCTTGCCA
TATCCAGACACGGACCCCGCATGGCAAGAGACTGCCTTGCATTTCGACGT
GACGGACATCACCACCGACGTGCATATCCTGCTTCTCGACAAGGTCAGCG
CTATCCACGTGTCAGATAATCTGATTTATTTCCTATAGGCTTGATTGGCA
TCAGTTAAATCCCGACATTCCGCCTTGTGACTGACCGATAGCCTTCTGAT
ACTATACAGCGTCCCCTGAGGACCCTGCCTGTCGGCCGCCTCATCCTACC
TTTGCCGAATTTTCTAGGTTGCCGTCATCCGTTACCCCCAGAGACGTCCG
TTTTCGATTTGGTCGCCACCGAAATGATCGAGTGCGGGCAACGTCCTGCG
ACATACCAAGCCCTGCTCTCCCAGAAGTATGCGCCACAGATGAAAGTGGC
AtcatccccttcttccatctTGCCCGCTATCAACGACGGTGTGGTGGGCC
AGGTCGTTCTCGAGGTAGCCTTGGAAACTTCGCACGACCTTTTCAACACT
TATTTAGCATCCCGCCCCTTGCGTGCCGACAGCTTTTCCTCAGGATCGAC
CTCTTCTCGCGTCGGGGCAGAAGAGCCCGCTCCCGCGAGTGAAATCAAAG
CGGCAGCGGAAGAGCCCACCCTGCAAAATGTCGACATACGCCAATTAGCT
ATTAATGTCTTTCGCATAAAAAAAGCCTTGGAGGCGCCCCCACTCCTCTT
TTACCTTTTGGACCATCctatcttcttttttcccctcgtgAGCTATCTGG
TATTCGCTCCCTTATGGACTCTCCCGCTACACGtctgccttcttcccttc
tttaaTGGTATTTTTACAGCAAGGAATGCTGTTCCATCTTTTCTGAGCAC
GgattcctcgtccttgccgtcctctacctcctttccttctatCGAGTACT
GGCCCCCCGGCCTGGTTGAACGCGTCCAAGAAATGgaatcctcctccgct
cgaACCAAACTTCGGCGGCTTAGGACAGCACTTCGTTGGCTTCAAGATCA
TCTTGGACTGGTGGCATCACTTTTAGAGCGATGTACCTTTATTTTCAATT
GGGAGGATCCTCATGTTACTTTACCTGTTACTGCAGGTATCGCGGTCGGT
ACGTCCGTGCTCAGTTTGATGCTGTACTTTATACCAATTAAGATACTCAT
ATGGTGCGTAGTAGTCTCACTGTATATGAAAATGCGAAAGAAAAGGCTGG
AGTCAAGTCTGGAAATGGTACAGACGAAGGGCATTCATGTTCATgaaacg
aaggagaagagagaaaggagagctACATGTGACTTACGACAAGCTGGCGA
TACCCCAGGTGTTGAGGAAGCGCCGAAAGTCAATTGTAAAGCATTGCTGG
GTAGTTCGCGCAGGCTGTCTACCGTAACATCAAATGTGTTTGCTCGCACC
CCTGATGCATTGGAGGTCTTGCACCGGAGAATAGCGCGTGGATATATGCA
CAAGGATCCCGACTTTGGACCCAAGATTATGTCAGATTGTTGTAAAAAGA
CTGATTAAGGAACATACGGAACTAGATGAATTGCAGCACAGTGTGAATTG
CGCAGGTAACTTTCATATACGTTTCCGAAAATCGAAAGAGAATCCCAACA
CAAGTGTTTCAAAAATTCAAACTTAGCAACGGTTCGGAGCGGCAGAAACC
TCTGACTGCGTTAAACTGCCGTTTAGGAGTTTCCATCACCGCATTCTGCG
CGAAAACATGCTCCAGCTGGCTGAGTCCTCTTTATTGTCACAAGAATCAC
TCACAATTGGAATGATACATCGTGTCGGCAACTGAAACTGAAAAATGATC
CAAAGGATAACTTCACAAACACTGAGGCCATCACATTGATTCAGGATGGC
GGAAGGTCAATTGGTCTCCAGTGCTCGTTCGGTACGTGCTTTATGATTGT
GCCAAATGTCTTGGCAATATGGAATAAGTCTTCTGTCCCACATATCGACT
ATGTCTTACCATGCTTTTTTACCCGTAAATCTATCGTGCAAAACCCGGCA
AAGGCTCCCGACACAACCTGTTCGAACTTCCAGTACGCTGTTTTTCCAtt
attttccctccttgttgcGGACGTGGCTCTCTATCGCATTCAAATGTGGG
CTCTTGCATATTGGACcagctttcttcttctttcgctTCTATTTTTGATT
CAAGTCGAGTGTGCTGAGGATGTAATTGAGACTAGCCGTTCCAGGACTCG
GTCCAGGCACATGGCAAGATGTTCGTGCGACTTTGCCGTACATGATCAAG
ATATGAAAAGCTATTATCTTATGTGCCACACAGAACCAAAGAGTATTCAA
GATATTATCATTCCGGAAAATGCGTGCGCATTACCCAAGCAGTAAAGAAT
GATTAGGAGGACTGGGATTTCTTTCCGAATTTTGCAGTTTGACTCAGCAA
CAACGTAAAAGAACAATTAATAAACACAGAGACTGACAAGTGTGAAAGCA
GTCTCATCCAAGAAGCCAACCTTGTGATTTAATGCTTGACTTTCTCTTTC
TGTACAATCCCGTAGATACACTTCTGTCTCCCAAATTGCCAACATCCAAG
CCCAACTGATTCCGTCCTATCCTCAATCTTAAAGAAAGTACGATTCATAA
ATACCCTGAGCATCGGCGATC

Coding sequence (CDS) from alignment at KK037249.1:443963..447233+

>rna8621 ID=rna8621|Name=rna8621|organism=Nannochloropsis gaditana|type=CDS|length=3996bp|location=Sequence derived from alignment at KK037249.1:443963..447233+ (Nannochloropsis gaditana)
ATGTCAGACGCAGAAAACAAAGATTCTGCCGCTGGCTGGCGTCCAGGAAA
AGTTATCGGGAAAATCCGTGAACGACAATCGAGAAGACGAGCGCTTCGGA
AAAAAGGGCAAGAAACGTGTGAAACTGGAAACGAGACCCTTCAAGAAGAG
ATTCCAATACGGCCGGAAAGGATACACGACGCTCGTGTGAATTATTCATT
ACGAAATGAACAGATCAAAGTAGCGGTTCaagctggggagggggacagct
TCGCAGCGCGGCAGGTCGGAGGATGGTTTCCCGGAAAATACGCAGAGAAA
CTTTTTCGTCGTGGCGCGAAACGTTTGCTCGGCTTGGTGAACGAGGAAAA
TCAACAGCGCCATGATGAAGCGATTACTGTGGGAAAACTGACTCTAATTT
TCAAAGGCGCAAAAAAGTTgggcaaagggggaagaagagcaagactTGAG
GAAaatcaaggagggggggggagcggaatACTTAATCCTTACTTCGAGGT
CTGGTGCGAAGGCACCAAGCGTCTCATCAAACCCAAAGCATTTCAGGATA
GTAGTgaaggaggcgtgggggtggaaggaggcgacTGGACACCCGTGGGC
TTGCCATATCCAGACACGGACCCCGCATGGCAAGAGACTGCCTTGCATTT
CGACGTGACGGACATCACCACCGACGTGCATATCCTGCTTCTCGACAAGC
GTCCCCTGAGGACCCTGCCTGTCGGCCGCCTCATCCTACCTTTGCCGAAT
TTTCTAGGTTGCCGTCATCCGTTACCCCCAGAGACGTCCGTTTTCGATTT
GGTCGCCACCGAAATGATCGAGTGCGGGCAACGTCCTGCGACATACCAAG
CCCTGCTCTCCCAGAAGTATGCGCCACAGATGAAAGTGGCAtcatcccct
tcttccatctTGCCCGCTATCAACGACGGTGTGGTGGGCCAGGTCGTTCT
CGAGGTAGCCTTGGAAACTTCGCACGACCTTTTCAACACTTATTTAGCAT
CCCGCCCCTTGCGTGCCGACAGCTTTTCCTCAGGATCGACCTCTTCTCGC
GTCGGGGCAGAAGAGCCCGCTCCCGCGAGTGAAATCAAAGCGGCAGCGGA
AGAGCCCACCCTGCAAAATGTCGACATACGCCAATTAGCTATTAATGTCT
TTCGCATAAAAAAAGCCTTGGAGGCGCCCCCACTCCTCTTTTACCTTTTG
GACCATCctatcttcttttttcccctcgtgAGCTATCTGGTATTCGCTCC
CTTATGGACTCTCCCGCTACACGtctgccttcttcccttctttaaTGGTA
TTTTTACAGCAAGGAATGCTGTTCCATCTTTTCTGAGCACGgattcctcg
tccttgccgtcctctacctcctttccttctatCGAGTACTGGCCCCCCGG
CCTGGTTGAACGCGTCCAAGAAATGgaatcctcctccgctcgaACCAAAC
TTCGGCGGCTTAGGACAGCACTTCGTTGGCTTCAAGATCATCTTGGACTG
GTGGCATCACTTTTAGAGCGATGTACCTTTATTTTCAATTGGGAGGATCC
TCATGTTACTTTACCTGTTACTGCAGGTATCGCGGTCGGTACGTCCGTGC
TCAGTTTGATGCTGTACTTTATACCAATTAAGATACTCATATGGTGCGTA
GTAGTCTCACTGTATATGAAAATGCGAAAGAAAAGGCTGGAGTCAAGTCT
GGAAATGGTACAGACGAAGGGCATTCATGTTCATgaaacgaaggagaaga
gagaaaggagagctACATGTGACTTACGACAAGCTGGCGATACCCCAGGT
GTTGAGGAAGCGCCGAAAGTCAATTGTAAAGCATTGCTGGGTAGTTCGCG
CAGGCTGTCTACCGTAACATCAAATGTGTTTGCTCGCACCCCTGATGCAT
TGGAGGTCTTGCACCGGAGAATAGCGCGTGGATATATGCACAAGGATCCC
GACTTTGGACCCAAGATTATGTCAGATTGTTGTAAAAAGACTGATTAAAT
GTCAGACGCAGAAAACAAAGATTCTGCCGCTGGCTGGCGTCCAGGAAAAG
TTATCGGGAAAATCCGTGAACGACAATCGAGAAGACGAGCGCTTCGGAAA
AAAGGGCAAGAAACGTGTGAAACTGGAAACGAGACCCTTCAAGAAGAGAT
TCCAATACGGCCGGAAAGGATACACGACGCTCGTGTGAATTATTCATTAC
GAAATGAACAGATCAAAGTAGCGGTTCaagctggggagggggacagctTC
GCAGCGCGGCAGGTCGGAGGATGGTTTCCCGGAAAATACGCAGAGAAACT
TTTTCGTCGTGGCGCGAAACGTTTGCTCGGCTTGGTGAACGAGGAAAATC
AACAGCGCCATGATGAAGCGATTACTGTGGGAAAACTGACTCTAATTTTC
AAAGGCGCAAAAAAGTTgggcaaagggggaagaagagcaagactTGAGGA
AaatcaaggagggggggggagcggaatACTTAATCCTTACTTCGAGGTCT
GGTGCGAAGGCACCAAGCGTCTCATCAAACCCAAAGCATTTCAGGATAGT
AGTgaaggaggcgtgggggtggaaggaggcgacTGGACACCCGTGGGCTT
GCCATATCCAGACACGGACCCCGCATGGCAAGAGACTGCCTTGCATTTCG
ACGTGACGGACATCACCACCGACGTGCATATCCTGCTTCTCGACAAGCGT
CCCCTGAGGACCCTGCCTGTCGGCCGCCTCATCCTACCTTTGCCGAATTT
TCTAGGTTGCCGTCATCCGTTACCCCCAGAGACGTCCGTTTTCGATTTGG
TCGCCACCGAAATGATCGAGTGCGGGCAACGTCCTGCGACATACCAAGCC
CTGCTCTCCCAGAAGTATGCGCCACAGATGAAAGTGGCAtcatccccttc
ttccatctTGCCCGCTATCAACGACGGTGTGGTGGGCCAGGTCGTTCTCG
AGGTAGCCTTGGAAACTTCGCACGACCTTTTCAACACTTATTTAGCATCC
CGCCCCTTGCGTGCCGACAGCTTTTCCTCAGGATCGACCTCTTCTCGCGT
CGGGGCAGAAGAGCCCGCTCCCGCGAGTGAAATCAAAGCGGCAGCGGAAG
AGCCCACCCTGCAAAATGTCGACATACGCCAATTAGCTATTAATGTCTTT
CGCATAAAAAAAGCCTTGGAGGCGCCCCCACTCCTCTTTTACCTTTTGGA
CCATCctatcttcttttttcccctcgtgAGCTATCTGGTATTCGCTCCCT
TATGGACTCTCCCGCTACACGtctgccttcttcccttctttaaTGGTATT
TTTACAGCAAGGAATGCTGTTCCATCTTTTCTGAGCACGgattcctcgtc
cttgccgtcctctacctcctttccttctatCGAGTACTGGCCCCCCGGCC
TGGTTGAACGCGTCCAAGAAATGgaatcctcctccgctcgaACCAAACTT
CGGCGGCTTAGGACAGCACTTCGTTGGCTTCAAGATCATCTTGGACTGGT
GGCATCACTTTTAGAGCGATGTACCTTTATTTTCAATTGGGAGGATCCTC
ATGTTACTTTACCTGTTACTGCAGGTATCGCGGTCGGTACGTCCGTGCTC
AGTTTGATGCTGTACTTTATACCAATTAAGATACTCATATGGTGCGTAGT
AGTCTCACTGTATATGAAAATGCGAAAGAAAAGGCTGGAGTCAAGTCTGG
AAATGGTACAGACGAAGGGCATTCATGTTCATgaaacgaaggagaagaga
gaaaggagagctACATGTGACTTACGACAAGCTGGCGATACCCCAGGTGT
TGAGGAAGCGCCGAAAGTCAATTGTAAAGCATTGCTGGGTAGTTCGCGCA
GGCTGTCTACCGTAACATCAAATGTGTTTGCTCGCACCCCTGATGCATTG
GAGGTCTTGCACCGGAGAATAGCGCGTGGATATATGCACAAGGATCCCGA
CTTTGGACCCAAGATTATGTCAGATTGTTGTAAAAAGACTGATTAA

Synonyms

Publications