rna8620, rna8620 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8620
Unique Name	rna8620
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1275
Alignment location	KK037249.1:442930..443430 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100039g11.4443.mrna
Orig protein id	gnl\|cribi\|Naga_100039g11.4443
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:442930..443430 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100039g11	gene8355	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8620	rna8620-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22105.1	cds8593	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:442930..443430-
coding sequence from alignment at KK037249.1:442930..443430-

mRNA sequence

>rna8620 ID=rna8620|Name=rna8620|organism=Nannochloropsis gaditana|type=mRNA|length=1275bp
ATGACGGTCGAAATGGAACTCGCGCGTCCTGGCTTGTTAACCTCCCCCCA
TCCCTTACGTCACACAATGAATTATGTCCAAACACTGCTGCCCTTTCTCT
CACATAGGTCTGAAGCTGAGCAACAGAAATGCTTGATGAGTTTGAAGCTA
AGCCAACGATTCCTGTGTACAGTATATTTCTGTTTTATCTTGCCTTGGAT
CCAAGCATGGGACGCACCCATCCATCAAGAGGATACGACCTTGAATGCGA
GGACGGCGACTTCCTTCCGACCTCAGTCAAATTTGATACAGAGGGAATAC
GGATACAATGAAACCATGGCCCGACACTTCGTCGACCTTTGTGGCTGCGC
ATACTGTTGCATTCGAGGCTGCGATACGTGTTGGACTTACCCGGCTCTAA
ATGTGACAGAGGTCCACTCCCGTGTCCTTGATGGGCATGGGTTTGTAGGG
CTGGATGCTCCTCAAAACGTTGTCTACATTGTTTTCACCGGAACTGACCC
ACTTGCCGTGCAGAATTATTTTGACGATCTGGACTTCATTCCTGTAGAGT
TCCCGGGGTGCGAAGGCTGTTGGGTCCACCGTGGATTTTATCATACGTAC
CTAGGCTTACGCGACCAGGTGCTGGATACGCTGGCCGTTTTCAGTCATGA
TCACCCGAGTGCGAAACTTCATATCACCGGTCACTCATTGGGAGGAGCCA
TGGCCGTCTTCGCAGCATTGGAGTTGATTCATAGCTTGGGGCTGCGTGTC
CAGACTCTTTACACATTCGGACAACCACGCGTTGGAAACGCCGCGTTCCA
GACCTTCCTTCACGAAGCACTTTCCTTGTCCTCCTGTGCGCATTTCCGAA
TCACGCAGCACAGGGATCCGATAGTGCATCTTCCTCCCACATTCGTTCCT
TCGCGTTCGATGGGATTTCAGCATGAGCCGCAGGAGGTTTTTTATCCTTG
TGGGGTCTTGCGAGGGAACATAACCAAGATGAGCGGTACCGAGTCAAACA
AAACATTCAACCCGTGGAACAGCAGTGTCTCTGACCCTGAATCTTGTCAA
TACATTGTCTGCGACCCTGTGGAAGGAGAAGATCCTCGAGGAAGCGATCG
ATTTCGCGTCGACCTTAATTTTGTCGATCATGTCACTTACTTAGGATTCC
CTTTCACCGCCAATTACATGCTGTGTGACTTGTTTCAGATGAAAGATAAA
GAAAACTCAAGGCATATGCGCTCCAGAGGAGACCAAGAAGTTCAAACTGA
GGAGTTGCTGCGGAGCACACAGTAG

protein sequence of rna8620

>rna8620-protein ID=rna8620-protein|Name=rna8620|organism=Nannochloropsis gaditana|type=polypeptide|length=147bp
MLRHQSIHNSPFNFSTTLSLDGLLNGSIFVMGVIMCFILVGVVHFTNKAA
SRDKISELPQTIQQQQNPLNTSLLQSPIVTVAETLTTCSVSPPHVSSLKL
LLYHVVSYSADNCCTNATMSKESQIIPECLKYQYFEGRESIMTTRSP

mRNA from alignment at KK037249.1:442930..443430-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8620 ID=rna8620|Name=rna8620|organism=Nannochloropsis gaditana|type=mRNA|length=501bp|location=Sequence derived from alignment at KK037249.1:442930..443430- (Nannochloropsis gaditana)
ATGCTGCGCCATCAATCCATCCACAATAGTCCATTTAACTTTTCGACCAC
CTTGAGTCTCGATGGTCTCCTAAATGGTAGCATCTTTGTGATGGGAGTCA
TCATGTGCTTTATTCTTGTGGGGGTGGTACACTTCACAAACAAGGCAGCC
AGTCGAGACAAAATATCTGAACTCCCACAAACAATTCAGCAACAGCAGAA
TCCTTTAAACACTTCGCTGTTACAGTCCCCGATCGTGACAGTGGCTGAAA
CTTTGACAACTTGCAGTGTAAGCCCCCCGCATGTATCGTCCCGTACCGTA
CCCTGCAATCAAACTTTGCCACATTCAGCCGTGGCTGCGTTTTGAAAAGT
AAAATTATTGCTATACCATGTTGTGTCATACTCTGCTGACAACTGTTGTA
CAAATGCGACTATGTCCAAAGAAAGCCAGATCATTCCTGAATGCTTAAAG
TATCAATATTTCGAGGGCCGTGAAAGCATCATGACTACGCGATCGCCATA
A

Coding sequence (CDS) from alignment at KK037249.1:442930..443430-

>rna8620 ID=rna8620|Name=rna8620|organism=Nannochloropsis gaditana|type=CDS|length=888bp|location=Sequence derived from alignment at KK037249.1:442930..443430- (Nannochloropsis gaditana)
TAAAATTATTGCTATACCATGTTGTGTCATACTCTGCTGACAACTGTTGT
ACAAATGCGACTATGTCCAAAGAAAGCCAGATCATTCCTGAATGCTTAAA
GTATCAATATTTCGAGGGCCGTGAAAGCATCATGACTACGCGATCGCCAT
AAATGCTGCGCCATCAATCCATCCACAATAGTCCATTTAACTTTTCGACC
ACCTTGAGTCTCGATGGTCTCCTAAATGGTAGCATCTTTGTGATGGGAGT
CATCATGTGCTTTATTCTTGTGGGGGTGGTACACTTCACAAACAAGGCAG
CCAGTCGAGACAAAATATCTGAACTCCCACAAACAATTCAGCAACAGCAG
AATCCTTTAAACACTTCGCTGTTACAGTCCCCGATCGTGACAGTGGCTGA
AACTTTGACAACTTGCAGTGTAAGCCCCCCGCATGTATCGTCCCTAAAAT
TATTGCTATACCATGTTGTGTCATACTCTGCTGACAACTGTTGTACAAAT
GCGACTATGTCCAAAGAAAGCCAGATCATTCCTGAATGCTTAAAGTATCA
ATATTTCGAGGGCCGTGAAAGCATCATGACTACGCGATCGCCATAAATGC
TGCGCCATCAATCCATCCACAATAGTCCATTTAACTTTTCGACCACCTTG
AGTCTCGATGGTCTCCTAAATGGTAGCATCTTTGTGATGGGAGTCATCAT
GTGCTTTATTCTTGTGGGGGTGGTACACTTCACAAACAAGGCAGCCAGTC
GAGACAAAATATCTGAACTCCCACAAACAATTCAGCAACAGCAGAATCCT
TTAAACACTTCGCTGTTACAGTCCCCGATCGTGACAGTGGCTGAAACTTT
GACAACTTGCAGTGTAAGCCCCCCGCATGTATCGTCCC

Synonyms

Publications