rna8613, rna8613 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8613
Unique Name	rna8613
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1782
Alignment location	KK037249.1:425379..427254 -

Link to JBrowse

Properties


Property Name	Value
Product	fad-dependent oxidoreductase
Orig transcript id	gnl\|cribi\|Naga_100039g19.4436.mrna
Orig protein id	gnl\|cribi\|Naga_100039g19.4436
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:425379..427254 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100039g19	gene8348	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22098.1	cds8586	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8613	rna8613-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037249.1:425379..427254-
coding sequence from alignment at KK037249.1:425379..427254-

mRNA sequence

>rna8613 ID=rna8613|Name=rna8613|organism=Nannochloropsis gaditana|type=mRNA|length=1782bp
ATGAATAGGGCAGCAAGTCCGGACATTGGCATCCCACGAGGCGTGAAGGG
ACGAGGAGGGAGGCTCCGGGTGTCAAGCGCCTGCCGAGTGTCGTTTCCCA
GGCTAAGTAAGAGGATGGCTCCCACGCTGACACCAACAGGCCCGCCACCC
ACTTCTCCGGCCAATTTGACCTTCACGATTGCCAGCTACGTCTGCGCAGT
CATTACCCTGGTGGGTTTCGCGGCAATCGCGCTGACCATGTCACGGCGCC
ATCAGTCCAGAGACGTCGACACCTTCCTCACGGCGCGGGCCTCGCAGCCC
ATGCTCCGTGTCGCCTGGTCCTTCTTCGCCTCCAGCATCGGGGCCTGGGC
AATTTTCCTCCCCGCGTCCTACCCGGCCTTCGGGGGGTGGCTCTCCATCA
TTACCTACGCGGTGTCAACAGGGTTGCCTCTCTTGCTCATCTCGGAGTTT
GGGCGGAAGATCCTCAAGCGCACCCCGGACGTCCTGTCCTTGAACGACTT
TGCCCACCGGGCGTACGGCCGTCCCGTGCAAGTCTTTGTGATCGTCTTGT
CGCTGCTGAACATGTCTGTGGCGCTCATCAGTGAGTACACGGCCATCGGC
GACCTGTTCGAGCACTATGTCGGGGGCCCTTCCCGCATCTACATCATCAT
CCTGGTCGGTCTCGTGACGGCTGTCTACACGGCAAAGGGGGGGCTGCTCA
TCTCTCTCCTCACCGACCAGCTTCAAGCCGCTTTAATTTTGGTCTTGATT
TTGATTGCCTCGCTCTATCTTGTCGTCAACTTTCGCGAACCCCTGCGCCA
GCCCCTGCCGGAGCGTTTAGGCATCAATTACTCGGGGTTCAGCTCCATTT
TCTCCCTTCCTATCTCCCTCCTCTCCTCTGCGTGTTATCAAGAAAGCTTT
TGGCAACGGGTATGGGCCGCGGAGGACAAGCGCAGCCTTCGACAGGGAGC
GCTCTTGGGGTTCATGCTCACGACCCTGGTGATCGGCTTCTTCGGGACCG
TGGGCTGGGTGGGCCTGTGGGCGGACTTGCCTCCACTCGACGACCACAAC
AATTTGGCCTTCTTCGTACCTTTCTCCGACCCGGTGACGGGGAGGAATGC
AGGGGCCCTGGTCATGCGGGTGTTGTTGGTGGTTTTGTCGACGACCATGA
ATGAGTCCGCTGTGGACTCCCTCCAGAACGCCATCGTCTCCACCCTTTCC
TCCTCCCTCTTGGTCGATAGACCTGTATCCTGGTCGCGAGCATTGGTCTT
CGTTGTGAATGCGCCGATTGTTGTTATCGCATTACAGAGCTACGCCCTCC
TCGACCTCTTCCTGGCCATGAACATCATCACGGCAACCTCTACTTTCCCC
CTGCTCTCCGCCCTCTGGCTTCCCCGAGTCTCAGGACCCACTGTTCTCTT
TTCCTCCGCCGTCAGCCTCATTTGTACTTGCCTTGTGGGGGTGATTACTG
AAGGTCAAGGCGTAGCCAAAGGTCTCAAATGGACCTTCACGTCGCAGCTG
AATGAGTACGATTGGCGGATATTCTTGGTGGCTGCGCTCACCTCCGTTTG
CTGCACCTTCGGACTCTGGTTCGTCGTGGATACACGGGGGCTTGGTTTTA
CGGTCGCTGCTCCAGAATTGAATGGAGACCTTGGAAATAATTTGGGGCCC
GATGTGCACCCACCATTGCTCGCTCGATGTGGATGCTGGCCAATCCTATC
AGCATCATCCATCGGTGGTGCCTCTGGTTCCGGCGGGAAGCGTGACCAGA
AAGGAGGGAAACTGTTGGGTTGTAGTGGCTGA

protein sequence of rna8613

>rna8613-protein ID=rna8613-protein|Name=rna8613|organism=Nannochloropsis gaditana|type=polypeptide|length=538bp
MHSAPFKTFFNASLWGMILTMLLDTAHAALGAPPSLPTTTDDVAQHEISL
VNHDGSILDQLNSTLGGIPSKWHNWHDTIVCKPGFLAFPSSIEEVIQLVK
SHACVRVVGLGHSFNDLTCSDDLMMATLQLDRILGLDKSKMTVTTQAGVK
TRNLIDWLARRGYALPTIPYYIDQSIGGAVATATHGSSIFWGSLSSLVTE
IKIVLADGSVRTLTEADGDLFAAARCNVGVLGVVVELTFIIVPNKIVRRG
LGYASDAHLLTELKKAEHDSLAFERVHYWYSPPLKLAAVTTVDNLSPVEQ
HEAKAMSSLGREASDWYYRLFADSPLEKPLQRVVLANYLKTPSAKEAATN
IMLGHAMNILPGTYKLSDALPVQQVLETDILLSAFGRYDQYEYAVALDKA
HDCVKSLFELFDRNVTNRDDFRVPFCLRFVGPNHEGLLGMSRGGSRFYLN
MDNYDVYNRHGFSQSMQVIKDLMASDTCQARVHYGKASIYSPVSGAWTKR
DAQYVKDTVGVDIFERFLSAAKTLDPSGKFADGVLVPK

mRNA from alignment at KK037249.1:425379..427254-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8613 ID=rna8613|Name=rna8613|organism=Nannochloropsis gaditana|type=mRNA|length=1876bp|location=Sequence derived from alignment at KK037249.1:425379..427254- (Nannochloropsis gaditana)
ACCCAAAAGGGATAGACTAATTACGATAAAAATCGTAGTACGTACTGAAT
TCGAGCTCCCCGCGCAACACTCTATTCACTATGCATTCAGCGCCTTTTAA
GACATTTTTTAATGCATCTTTGTGGGGAATGATTTTAACAATGCTATTAG
ACACTGCTCATGCAGCTTTAGGTGCCCCCCCCTCGCTCCCTACCACGACG
GATGACGTTGCCCAACATGAGATATCATTGGTTAACCATGATGGATCAAT
TTTAGATCAGCTTAACAGCACACTTGGTGGTATCCCATCCAAATGGCACA
ATTGGCATGATACAATTGTTTGTAAACCTGGTTTTCTGGCATTCCCTTCG
AGCATCGAGGAGGTGATACAATTGGTAAAAAGTCATGCATGTGTGCGGGT
GGTAGGCTTGGGCCACAGCTTCAATGACTTGACGTGCTCAGACGATTTAA
TGATGGCGACTCTTCAATTAGACCGCATTCTGGGCTTAGACAAATCTAAA
ATGACTGTTACCACGCAGGCCGGTGTGAAAACCCGGAACTTGATTGACTG
GCTTGCCCGTCGAGGATACGCTCTGCCCACAATTCCCTACTACATCGATC
AATCGATTGGGGGGGCCGTTGCGACAGCAACTCATGGTAGCTCAATATTC
TGGGGAAGTTTGTCCAGTCTTGTAACAGAAATAAAAATCGTCTTAGCCGA
TGGCAGCGTGCGCACATTGACGGAAGCGGATGGCGACCTTTTTGCTGCGG
CGCGATGCAATGTAGGCGTCTTGGGCGTGGTGGTGGAACTCACCTTTATT
ATTGTACCAAACAAAATTGTAAGACGCGGGCTAGGGTATGCTTCGGACGC
ACACTTACTTACTGAACTCAAAAAAGCCGAACATGATTCCTTGGCTTTTG
AGCGTGTACATTATTGGTATTCCCCCCCTTTGAAGCTGGCTGCTGTCACG
ACGGTGGACAACCTTTCCCCCGTTGAGCAGCATGAGGCGAAAGCCATGTC
TAGCTTAGGGCGTGAAGCATCAGATTGGTACTACCGTCTTTTCGCCGATA
GCCCGCTGGAGAAACCCTTGCAACGGGTGGTACTGGCGAATTATTTAAAG
ACCCCGTCCGCCAAGGAGGCGGCCACGAATATAATGCTTGGGCACGCCAT
GAATATACTGCCTGGTACGTACAAATTATCCGATGCCCTACCTGTGCAGC
AAGTCTTGGAGACAGACATTCTCCTCTCAGCCTTTGGCCGATATGATCAA
TACGAATACGCAGTGGCTCTGGACAAGGCCCATGACTGCGTCAAGTCTCT
ATTTGAGCTCTTCGATCGGAATGTAACCAATCGGGACGATTTCCGAGTTC
CTTTTTGTCTCCGTTTCGTGGGACCCAACCATGAAGGTTTGCTCGGTATG
TCTCGTGGAGGGTCACGTTTTTATTTGAATATGGACAACTACGACGTGTA
CAATCGGCATGGCTTTTCGCAATCCATGCAAGTTATCAAGGATCTTATGG
CGTCCGACACTTGCCAAGCCCGCGTGCACTACGGGAAAGCTTCCATCTAT
TCTCCTGTGAGCGGTGCTTGGACTAAGCGTGATGCGCAGTATGTGAAGGA
CACGGTGGGCGTGGACATCTTTGAGCGCTTCCTTTCTGCAGCAAAGACCC
TGGACCCGTCCGGAAAGTTTGCTGACGGGGTGTTGGTCCCAAAATAACGT
GAAATTCTTCAATTTAACAGGGGTTTGTAAGAGGCAGGGGATACATGTGA
CAAAGGTTTGATGTACGAGGGACAAATGTGGCAAAAAAAGATACCTTACG
GGAGACTGTCTCCAAGCGAACTTCAAGTTTTTAATCACACACATTTCTTT
AAAAAGTAATGCTACTGATTTGTCCT

Coding sequence (CDS) from alignment at KK037249.1:425379..427254-

>rna8613 ID=rna8613|Name=rna8613|organism=Nannochloropsis gaditana|type=CDS|length=1617bp|location=Sequence derived from alignment at KK037249.1:425379..427254- (Nannochloropsis gaditana)
ATGCATTCAGCGCCTTTTAAGACATTTTTTAATGCATCTTTGTGGGGAAT
GATTTTAACAATGCTATTAGACACTGCTCATGCAGCTTTAGGTGCCCCCC
CCTCGCTCCCTACCACGACGGATGACGTTGCCCAACATGAGATATCATTG
GTTAACCATGATGGATCAATTTTAGATCAGCTTAACAGCACACTTGGTGG
TATCCCATCCAAATGGCACAATTGGCATGATACAATTGTTTGTAAACCTG
GTTTTCTGGCATTCCCTTCGAGCATCGAGGAGGTGATACAATTGGTAAAA
AGTCATGCATGTGTGCGGGTGGTAGGCTTGGGCCACAGCTTCAATGACTT
GACGTGCTCAGACGATTTAATGATGGCGACTCTTCAATTAGACCGCATTC
TGGGCTTAGACAAATCTAAAATGACTGTTACCACGCAGGCCGGTGTGAAA
ACCCGGAACTTGATTGACTGGCTTGCCCGTCGAGGATACGCTCTGCCCAC
AATTCCCTACTACATCGATCAATCGATTGGGGGGGCCGTTGCGACAGCAA
CTCATGGTAGCTCAATATTCTGGGGAAGTTTGTCCAGTCTTGTAACAGAA
ATAAAAATCGTCTTAGCCGATGGCAGCGTGCGCACATTGACGGAAGCGGA
TGGCGACCTTTTTGCTGCGGCGCGATGCAATGTAGGCGTCTTGGGCGTGG
TGGTGGAACTCACCTTTATTATTGTACCAAACAAAATTGTAAGACGCGGG
CTAGGGTATGCTTCGGACGCACACTTACTTACTGAACTCAAAAAAGCCGA
ACATGATTCCTTGGCTTTTGAGCGTGTACATTATTGGTATTCCCCCCCTT
TGAAGCTGGCTGCTGTCACGACGGTGGACAACCTTTCCCCCGTTGAGCAG
CATGAGGCGAAAGCCATGTCTAGCTTAGGGCGTGAAGCATCAGATTGGTA
CTACCGTCTTTTCGCCGATAGCCCGCTGGAGAAACCCTTGCAACGGGTGG
TACTGGCGAATTATTTAAAGACCCCGTCCGCCAAGGAGGCGGCCACGAAT
ATAATGCTTGGGCACGCCATGAATATACTGCCTGGTACGTACAAATTATC
CGATGCCCTACCTGTGCAGCAAGTCTTGGAGACAGACATTCTCCTCTCAG
CCTTTGGCCGATATGATCAATACGAATACGCAGTGGCTCTGGACAAGGCC
CATGACTGCGTCAAGTCTCTATTTGAGCTCTTCGATCGGAATGTAACCAA
TCGGGACGATTTCCGAGTTCCTTTTTGTCTCCGTTTCGTGGGACCCAACC
ATGAAGGTTTGCTCGGTATGTCTCGTGGAGGGTCACGTTTTTATTTGAAT
ATGGACAACTACGACGTGTACAATCGGCATGGCTTTTCGCAATCCATGCA
AGTTATCAAGGATCTTATGGCGTCCGACACTTGCCAAGCCCGCGTGCACT
ACGGGAAAGCTTCCATCTATTCTCCTGTGAGCGGTGCTTGGACTAAGCGT
GATGCGCAGTATGTGAAGGACACGGTGGGCGTGGACATCTTTGAGCGCTT
CCTTTCTGCAGCAAAGACCCTGGACCCGTCCGGAAAGTTTGCTGACGGGG
TGTTGGTCCCAAAATAA

Synonyms

Publications