rna861, rna861 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna861
Unique Name	rna861
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1173
Alignment location	CM002456.1:591088..592396 -

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Properties


Property Name	Value
Product	tpr domain protein
Orig transcript id	gnl\|cribi\|Naga_100017g52.322.mrna
Orig protein id	gnl\|cribi\|Naga_100017g52.322
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:591088..592396 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100017g52	gene824	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna861	rna861-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29824.1	cds861	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:591088..592396-
coding sequence from alignment at CM002456.1:591088..592396-

mRNA sequence

>rna861 ID=rna861|Name=rna861|organism=Nannochloropsis gaditana|type=mRNA|length=1173bp
ACATGACTCTCCGGCAGAAAATAGAGACTATGTCAAGCTTCATTTGCTTG
CATACTTGTCGTGTGCTCATGCGATATATTATAGTGCCTGACTGGATTTG
AATTTTAGGGAGGGTCCATCCATCGTACAATGCATACAATGCGGCAGGCC
CTCTCCTTCGTAGTCCCGGGAGAAGCTAGTTTCCATTCCCAATGCATTGT
AATCTTCCTTATTTGATCTTCGAAGGCGGAAATGCCGTGGAGATTTTACC
TGCCGTCATGTGTACGAGCACTTCTGTGTTCTCCACGTGATCACATCGGT
CACTCATCTTCTTCCATGACCTATCCAGGCGCGACAACATGGCCGCGGAT
GTCCCTTCCGCGACTGTTTATGTAAACAACGTAAATGAGAAGATTCGAGG
GGAGAAACTCATGCAAGGATTGAGGCAACTCTTCAACCCCATGGGGAAAA
TTCGCAAAATTCATGCCCGAAGATCCCTCAAGCTCCGGGGCCAAGCTTTT
GTTGTCTTTGATCGCGTTAACGATGCCCAAAATGCCATCGACAAACTGCA
AAACTTTTCGTTTTATGGCAAGCCCTTACGAATGGCCATCACCCAGGAGC
CCTCTGACCAGACACTGCGGGCACAAGGGGTGGAGCCCGATCGCAGGCCC
GCTCACCCGAAGAAGGGCATGGTGGCTGTGAAACTAGAGAGGACCAAGGG
CAGCGGAAGCCGGTCGGTGCCGACAGCAACACCTGTCGCACAGCCCTTCG
CTCCATCCGCGACACTCGATGTCCCGCCTCCACCACCGCAGCTCCCTCCA
GCACGCGCACACACGAACGGGGGCGCTGACCCGATGGCCTCCACGGGTGA
AGGAAGCGGTTTCGTGATCCCCCCGGCCGTTGCGGCGCCTGCCCCACCTT
ACAACGTGTTATTTTGCGAAGAACTGCCCGCGGAGGCAACCGAGGAAATG
CTCGTGGCCTTGTTCAGTCAGTACGCAGGCTTTATGGGCGTGCGCATGGT
GGCAGCTCGAGGATGCGCCTTCCTGGACTTCAAGAGTGAGCCGGAGGCAA
CCGTTGCCCTGCACGGACTGTCAGGCTTCAAGCTGACGGAGGAGCGTCCT
TTGAAGCTCTCTTATGCAAGGCAATGAGGGCGGGGGATGGGCGGGAGGGT
GAAGAAAGAAAATGGGCCGAGCG

protein sequence of rna861

>rna861-protein ID=rna861-protein|Name=rna861|organism=Nannochloropsis gaditana|type=polypeptide|length=367bp
MADQALNQQPLPTMASHEHEELMKRAEYALATLQPELAVKFYERALEATP
DATPVMDALGELLLNTGDGERAYALFERSTKLAPDMGATKWLYLGQLSEG
WKSLQHFSKGAELLQEELGARRINPCLKEPDRKEGEEVGGEGMNDEAFAI
INQLVSTHCSIAELYLTDLCFEEDAEARCQAALDEALRLDVGGSPEVTQA
CANLRLSQKRGQEASALMIETVKRLGACQQDDVEEDDEIEGEGGEGAGQE
IRGLQLPTIMFRLQTAKLLLECQAYNKKCAKEAVRVLEACKCEDDENVEV
WYLLGVAYSRQRKPDVGMAKAHLLHAQQALRKMEQMDGDAEKADAYGEQL
SQSSSDEDDSGREEMQA

mRNA from alignment at CM002456.1:591088..592396-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna861 ID=rna861|Name=rna861|organism=Nannochloropsis gaditana|type=mRNA|length=1309bp|location=Sequence derived from alignment at CM002456.1:591088..592396- (Nannochloropsis gaditana)
ATGGCGGATCAGGCATTAAACCAGCAACCATTGCCAACAATGGCGTCTCA
CGAGCATGAAGAACTTATGAAGCGCGCGGAATACGCCTTGGCTACATTGC
AACCGGAGCTGGCTGTCAAGTACGTGAAGCTAACTAGACAAGATGTTGGG
GAGTAGTATCTTCACAATGGTGTCCCTCATACACGTCTCAGCGCTTGTGT
TTTCCGCTTGCTACTCTTACCAGGTTCTATGAACGTGCCCTGGAAGCGAC
GCCAGATGCAACGCCCGTGATGGACGCTCTAGGAGAGCTTTTGCTGAATA
CAGGGGACGGGGAGCGGGCATATGCACTCTTCGAGCGGAGTACGAAATTG
GCCCCAGATATGGGTGCCACGAAATGGTTGTACTTAGGCCAGCTTTCAGA
AGGTTGGAAATCGTTGCAGCACTTCAGCAAAGGTGCCGAATTGTTGCAGG
AGGAGCTGGGAGCCCGACGGATCAACCCTTGTCTGAAGGAACCAGATAGG
AAGGAAGGAGAGGAGGTCGGCGGGGAGGGAATGAATGATGAGGCCTTTGC
CATCATCAACCAGCTAGTAAGCACGCATTGCTCGATTGCGGAGCTCTACT
TGACAGACTTGTGCTTCGAAGAGGACGCAGAAGCCAGGTGTCAGGCCGCC
TTAGACGAAGCCCTCCGGTTGGACGTAGGGGGGTCGCCTGAAGTGACGCA
GGCGTGCGCTAACCTGCGCCTAAGCCAGAAGCGAGGACAAGAGGCTTCCG
CGTTGATGATAGAAACGGTCAAGCGACTCGGGGCTTGCCAGCAGGACGAT
GTGGAGGAGGACGACGAAATTGAGGGGGAAGGGGGGGAGGGGGCGGGGCA
AGAGATCAGAGGGCTACAATTACCAACCATAATGTTCAGGCTACAGACTG
CAAAGCTCCTATTGGAGTGCCAGGCCTACAATAAAAAGTGCGCCAAAGAA
GCTGTGCGCGTATTGGAAGCTTGTAAATGCGAGGACGACGAGAACGTGGA
AGTGTGGTACCTACTGGGCGTGGCCTACTCCAGGCAGCGCAAGCCGGACG
TGGGAATGGCCAAGGCGCACCTTCTCCACGCGCAGCAAGCACTGCGGAAG
ATGGAGCAGATGGACGGGGACGCAGAAAAGGCCGACGCGTACGGAGAGCA
GCTAAGGTTGGTAGAGGAGCAGTTGGAGGTGTTACGCGGCGCGGAAGGGG
AGGGCATCGCGCGCTGTGAGACGGCGGCGGTGGGGACGGGGGGGATGAGC
CGAGTAGCCAGAGCAGTAGCGATGAAGATGACAGCGGGAGAGAAGAGATG
CAAGCATGA

Coding sequence (CDS) from alignment at CM002456.1:591088..592396-

>rna861 ID=rna861|Name=rna861|organism=Nannochloropsis gaditana|type=CDS|length=3312bp|location=Sequence derived from alignment at CM002456.1:591088..592396- (Nannochloropsis gaditana)
CCAGAGCAGTAGCGATGAAGATGACAGCGGGAGAGAAGAGATGCAAGCAT
GAGTTCTATGAACGTGCCCTGGAAGCGACGCCAGATGCAACGCCCGTGAT
GGACGCTCTAGGAGAGCTTTTGCTGAATACAGGGGACGGGGAGCGGGCAT
ATGCACTCTTCGAGCGGAGTACGAAATTGGCCCCAGATATGGGTGCCACG
AAATGGTTGTACTTAGGCCAGCTTTCAGAAGGTTGGAAATCGTTGCAGCA
CTTCAGCAAAGGTGCCGAATTGTTGCAGGAGGAGCTGGGAGCCCGACGGA
TCAACCCTTGTCTGAAGGAACCAGATAGGAAGGAAGGAGAGGAGGTCGGC
GGGGAGGGAATGAATGATGAGGCCTTTGCCATCATCAACCAGCTAGTAAG
CACGCATTGCTCGATTGCGGAGCTCTACTTGACAGACTTGTGCTTCGAAG
AGGACGCAGAAGCCAGGTGTCAGGCCGCCTTAGACGAAGCCCTCCGGTTG
GACGTAGGGGGGTCGCCTGAAGTGACGCAGGCGTGCGCTAACCTGCGCCT
AAGCCAGAAGCGAGGACAAGAGGCTTCCGCGTTGATGATAGAAACGGTCA
AGCGACTCGGGGCTTGCCAGCAGGACGATGTGGAGGAGGACGACGAAATT
GAGGGGGAAGGGGGGGAGGGGGCGGGGCAAGAGATCAGAGGGCTACAATT
ACCAACCATAATGTTCAGGCTACAGACTGCAAAGCTCCTATTGGAGTGCC
AGGCCTACAATAAAAAGTGCGCCAAAGAAGCTGTGCGCGTATTGGAAGCT
TGTAAATGCGAGGACGACGAGAACGTGGAAGTGTGGTACCTACTGGGCGT
GGCCTACTCCAGGCAGCGCAAGCCGGACGTGGGAATGGCCAAGGCGCACC
TTCTCCACGCGCAGCAAGCACTGCGGAAGATGGAGCAGATGGACGGGGAC
GCAGAAAAGGCCGACGCGTACGGAGAGCAGCTAAGATGGCGGATCAGGCA
TTAAACCAGCAACCATTGCCAACAATGGCGTCTCACGAGCATGAAGAACT
TATGAAGCGCGCGGAATACGCCTTGGCTACATTGCAACCGGAGCTGGCTG
TCAACCAGAGCAGTAGCGATGAAGATGACAGCGGGAGAGAAGAGATGCAA
GCATGAGTTCTATGAACGTGCCCTGGAAGCGACGCCAGATGCAACGCCCG
TGATGGACGCTCTAGGAGAGCTTTTGCTGAATACAGGGGACGGGGAGCGG
GCATATGCACTCTTCGAGCGGAGTACGAAATTGGCCCCAGATATGGGTGC
CACGAAATGGTTGTACTTAGGCCAGCTTTCAGAAGGTTGGAAATCGTTGC
AGCACTTCAGCAAAGGTGCCGAATTGTTGCAGGAGGAGCTGGGAGCCCGA
CGGATCAACCCTTGTCTGAAGGAACCAGATAGGAAGGAAGGAGAGGAGGT
CGGCGGGGAGGGAATGAATGATGAGGCCTTTGCCATCATCAACCAGCTAG
TAAGCACGCATTGCTCGATTGCGGAGCTCTACTTGACAGACTTGTGCTTC
GAAGAGGACGCAGAAGCCAGGTGTCAGGCCGCCTTAGACGAAGCCCTCCG
GTTGGACGTAGGGGGGTCGCCTGAAGTGACGCAGGCGTGCGCTAACCTGC
GCCTAAGCCAGAAGCGAGGACAAGAGGCTTCCGCGTTGATGATAGAAACG
GTCAAGCGACTCGGGGCTTGCCAGCAGGACGATGTGGAGGAGGACGACGA
AATTGAGGGGGAAGGGGGGGAGGGGGCGGGGCAAGAGATCAGAGGGCTAC
AATTACCAACCATAATGTTCAGGCTACAGACTGCAAAGCTCCTATTGGAG
TGCCAGGCCTACAATAAAAAGTGCGCCAAAGAAGCTGTGCGCGTATTGGA
AGCTTGTAAATGCGAGGACGACGAGAACGTGGAAGTGTGGTACCTACTGG
GCGTGGCCTACTCCAGGCAGCGCAAGCCGGACGTGGGAATGGCCAAGGCG
CACCTTCTCCACGCGCAGCAAGCACTGCGGAAGATGGAGCAGATGGACGG
GGACGCAGAAAAGGCCGACGCGTACGGAGAGCAGCTAAGATGGCGGATCA
GGCATTAAACCAGCAACCATTGCCAACAATGGCGTCTCACGAGCATGAAG
AACTTATGAAGCGCGCGGAATACGCCTTGGCTACATTGCAACCGGAGCTG
GCTGTCAACCAGAGCAGTAGCGATGAAGATGACAGCGGGAGAGAAGAGAT
GCAAGCATGAGTTCTATGAACGTGCCCTGGAAGCGACGCCAGATGCAACG
CCCGTGATGGACGCTCTAGGAGAGCTTTTGCTGAATACAGGGGACGGGGA
GCGGGCATATGCACTCTTCGAGCGGAGTACGAAATTGGCCCCAGATATGG
GTGCCACGAAATGGTTGTACTTAGGCCAGCTTTCAGAAGGTTGGAAATCG
TTGCAGCACTTCAGCAAAGGTGCCGAATTGTTGCAGGAGGAGCTGGGAGC
CCGACGGATCAACCCTTGTCTGAAGGAACCAGATAGGAAGGAAGGAGAGG
AGGTCGGCGGGGAGGGAATGAATGATGAGGCCTTTGCCATCATCAACCAG
CTAGTAAGCACGCATTGCTCGATTGCGGAGCTCTACTTGACAGACTTGTG
CTTCGAAGAGGACGCAGAAGCCAGGTGTCAGGCCGCCTTAGACGAAGCCC
TCCGGTTGGACGTAGGGGGGTCGCCTGAAGTGACGCAGGCGTGCGCTAAC
CTGCGCCTAAGCCAGAAGCGAGGACAAGAGGCTTCCGCGTTGATGATAGA
AACGGTCAAGCGACTCGGGGCTTGCCAGCAGGACGATGTGGAGGAGGACG
ACGAAATTGAGGGGGAAGGGGGGGAGGGGGCGGGGCAAGAGATCAGAGGG
CTACAATTACCAACCATAATGTTCAGGCTACAGACTGCAAAGCTCCTATT
GGAGTGCCAGGCCTACAATAAAAAGTGCGCCAAAGAAGCTGTGCGCGTAT
TGGAAGCTTGTAAATGCGAGGACGACGAGAACGTGGAAGTGTGGTACCTA
CTGGGCGTGGCCTACTCCAGGCAGCGCAAGCCGGACGTGGGAATGGCCAA
GGCGCACCTTCTCCACGCGCAGCAAGCACTGCGGAAGATGGAGCAGATGG
ACGGGGACGCAGAAAAGGCCGACGCGTACGGAGAGCAGCTAAGATGGCGG
ATCAGGCATTAAACCAGCAACCATTGCCAACAATGGCGTCTCACGAGCAT
GAAGAACTTATGAAGCGCGCGGAATACGCCTTGGCTACATTGCAACCGGA
GCTGGCTGTCAA

Synonyms

Publications